Wall clock time and date at job start Wed Apr 1 2020 04:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47103 * 2 1 4 4 C 1.46497 * 120.00548 * 270.00111 * 3 2 1 5 5 C 1.50703 * 109.47345 * 270.00324 * 4 3 2 6 6 H 1.07999 * 119.99738 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00265 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99843 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00057 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46690 * 90.00131 * 9 7 5 11 11 H 1.48500 * 109.47205 * 210.00122 * 9 7 5 12 12 H 1.48496 * 109.47094 * 330.00384 * 9 7 5 13 13 C 1.34781 * 120.00102 * 89.99793 * 3 2 1 14 14 O 1.21276 * 120.00176 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99687 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47113 * 179.97438 * 15 13 3 17 17 C 1.46899 * 111.00065 * 66.04389 * 16 15 13 18 18 C 1.46902 * 111.00087 * 190.00034 * 16 15 13 19 19 C 1.52997 * 109.47052 * 169.99876 * 18 16 15 20 20 N 1.46497 * 109.46995 * 180.02562 * 19 18 16 21 21 C 1.34776 * 120.00175 * 180.02562 * 20 19 18 22 22 O 1.21281 * 119.99608 * 359.97438 * 21 20 19 23 23 C 1.50699 * 120.00426 * 180.02562 * 21 20 19 24 24 H 1.09002 * 115.55636 * 325.68296 * 23 21 20 25 25 C 1.53000 * 117.50321 * 179.97438 * 23 21 20 26 26 C 1.52997 * 117.50247 * 111.36997 * 23 21 20 27 27 F 1.39902 * 117.49965 * 0.02562 * 26 23 21 28 28 F 1.39899 * 117.50367 * 214.98005 * 26 23 21 29 29 H 1.08994 * 109.47454 * 59.99973 * 1 2 3 30 30 H 1.09007 * 109.47125 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47555 * 299.99557 * 1 2 3 32 32 H 1.09000 * 109.47555 * 240.00443 * 2 1 3 33 33 H 1.09002 * 109.47707 * 119.99769 * 2 1 3 34 34 H 1.09010 * 109.47033 * 29.99443 * 4 3 2 35 35 H 1.08996 * 109.47968 * 149.99613 * 4 3 2 36 36 H 0.96999 * 119.99801 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47262 * 60.00162 * 15 13 3 38 38 H 1.09003 * 109.47047 * 299.99695 * 15 13 3 39 39 H 1.08998 * 109.46880 * 183.95787 * 17 16 15 40 40 H 1.09008 * 109.47296 * 303.95563 * 17 16 15 41 41 H 1.08998 * 109.46835 * 63.95222 * 17 16 15 42 42 H 1.09002 * 109.46601 * 49.99618 * 18 16 15 43 43 H 1.08996 * 109.46958 * 290.00113 * 18 16 15 44 44 H 1.08997 * 109.47037 * 59.99685 * 19 18 16 45 45 H 1.09000 * 109.47064 * 299.99624 * 19 18 16 46 46 H 0.97006 * 120.00064 * 359.97438 * 20 19 18 47 47 H 1.08990 * 117.49990 * 145.01584 * 25 23 21 48 48 H 1.09004 * 117.49237 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3487 3.1252 -3.6184 9 14 5.9135 2.0968 -3.4168 10 1 5.9773 0.8756 -4.2592 11 1 6.3921 3.2641 -4.2002 12 1 6.7735 1.9179 -2.2196 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 1.3843 3.3451 3.6278 18 6 2.3077 1.4809 4.8666 19 6 2.8814 2.3793 5.9641 20 7 2.8788 1.6562 7.2382 21 6 3.3421 2.2544 8.3535 22 8 3.7615 3.3912 8.3023 23 6 3.3400 1.5103 9.6640 24 1 2.5077 0.8224 9.8129 25 6 3.8794 2.2437 10.8937 26 6 4.6952 1.1180 10.2559 27 9 5.8417 1.4780 9.5394 28 9 4.7714 -0.0961 10.9468 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 3.6748 3.5157 -4.4443 37 1 2.6227 0.4187 2.5299 38 1 0.9443 1.0114 2.5302 39 1 1.6852 4.0311 4.4196 40 1 1.4063 3.8642 2.6695 41 1 0.3741 2.9854 3.8230 42 1 2.9184 0.5826 4.7761 43 1 1.2859 1.2012 5.1232 44 1 2.2707 3.2776 6.0545 45 1 3.9032 2.6589 5.7076 46 1 2.5430 0.7470 7.2792 47 1 3.4017 2.0386 11.8517 48 1 4.2361 3.2643 10.7547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390760209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:53 Heat of formation + Delta-G solvation = -150.065564 kcal Electronic energy + Delta-G solvation = -30283.244065 eV Core-core repulsion = 25623.660424 eV Total energy + Delta-G solvation = -4659.583641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -49.80290 -48.49264 -41.08931 -40.79980 -38.44746 -36.91039 -36.62850 -35.71423 -34.88497 -31.68050 -30.99460 -29.69629 -28.34592 -26.71678 -25.17652 -24.43637 -23.70702 -23.59337 -22.30258 -21.36638 -19.85099 -19.39653 -18.61657 -18.38440 -17.97375 -17.52824 -17.31027 -17.11625 -17.05613 -16.65859 -16.40751 -16.13007 -15.54438 -15.42633 -15.19767 -15.14187 -14.78254 -14.68958 -14.62105 -14.53241 -14.50099 -14.19160 -13.96095 -13.55310 -13.31756 -13.26127 -13.08257 -13.00794 -12.70314 -12.66794 -12.54372 -12.47569 -12.30630 -12.17941 -12.13330 -11.79919 -11.69208 -11.44517 -11.04702 -10.63630 -10.47536 -10.22306 -9.42352 -9.23696 -8.21739 -6.36110 1.00060 1.35264 1.38898 1.48980 1.74232 1.91086 2.00555 2.28467 2.30427 2.43354 3.02909 3.07564 3.12954 3.39867 3.47866 3.72943 3.76855 3.86500 4.03820 4.12434 4.25810 4.36483 4.43726 4.45641 4.46891 4.56268 4.58253 4.61438 4.68060 4.80400 4.82958 4.91447 4.96731 5.01263 5.07755 5.17772 5.23466 5.25965 5.41055 5.60102 5.84402 5.93365 6.08215 6.09176 6.37821 6.72674 6.87647 7.07030 7.30504 7.58603 8.84893 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.001865 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.812121 B =15007.568890 C =15791.454465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.275 1.275 13 C 0.493 3.507 14 O -0.581 6.581 15 C 0.055 3.945 16 N -0.549 5.549 17 C 0.023 3.977 18 C 0.055 3.945 19 C 0.126 3.874 20 N -0.703 5.703 21 C 0.534 3.466 22 O -0.571 6.571 23 C -0.179 4.179 24 H 0.194 0.806 25 C -0.126 4.126 26 C 0.199 3.801 27 F -0.176 7.176 28 F -0.155 7.155 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.422 0.578 47 H 0.171 0.829 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -12.678 29.696 33.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.199 1.199 13 C 0.281 3.719 14 O -0.461 6.461 15 C -0.075 4.075 16 N -0.274 5.274 17 C -0.125 4.125 18 C -0.072 4.072 19 C 0.001 3.999 20 N -0.356 5.356 21 C 0.320 3.680 22 O -0.450 6.450 23 C -0.200 4.200 24 H 0.211 0.789 25 C -0.163 4.163 26 C 0.162 3.838 27 F -0.156 7.156 28 F -0.136 7.136 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.260 0.740 47 H 0.188 0.812 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.123 -11.043 29.365 32.171 hybrid contribution 0.357 -0.268 -1.064 1.154 sum -6.767 -11.311 28.301 31.219 Atomic orbital electron populations 1.22148 0.94644 1.03462 1.01549 1.21750 0.95215 0.81337 1.03988 1.48295 1.64245 1.15177 1.06118 1.18641 0.95079 0.91422 0.80600 1.21716 0.97983 1.31754 1.06293 0.92955 1.25865 1.02322 0.94596 0.96583 1.70055 1.37705 1.34340 1.14785 0.85432 0.79133 0.78193 0.78152 1.18653 1.20786 1.19947 1.21279 0.77392 0.86763 0.86428 1.90625 1.47079 1.20648 1.87732 1.21989 1.02921 0.95536 0.87054 1.61298 1.53604 1.09814 1.02731 1.22472 0.93464 0.93771 1.02750 1.22231 1.01743 0.96423 0.86848 1.21172 1.01266 0.95342 0.82088 1.45617 1.63804 1.18958 1.07207 1.19778 0.76950 0.86035 0.85284 1.90757 1.47595 1.20253 1.86415 1.23826 0.98520 1.04294 0.93394 0.78905 1.24470 0.96462 0.97211 0.98193 1.19991 0.81571 0.85317 0.96935 1.93049 1.52663 1.91298 1.78627 1.93062 1.96553 1.45196 1.78758 0.94607 0.88561 0.92099 0.91213 0.87853 0.96154 0.98818 0.92502 0.85764 0.89011 0.91039 0.92972 0.93739 0.88163 0.91020 0.91881 0.93102 0.74035 0.81173 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 10.24 71.98 0.74 -2.86 16 2 C 0.10 2.82 5.93 86.38 0.51 3.33 16 3 N -0.61 -25.06 2.46 -826.16 -2.03 -27.09 16 4 C 0.26 14.34 5.16 85.63 0.44 14.79 16 5 C -0.54 -31.46 9.39 25.60 0.24 -31.22 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 9 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.49 19.98 7.37 87.66 0.65 20.63 16 14 O -0.58 -30.21 13.91 -3.02 -0.04 -30.26 16 15 C 0.06 1.41 4.00 85.56 0.34 1.75 16 16 N -0.55 -14.25 4.50 -927.04 -4.17 -18.42 16 17 C 0.02 0.63 8.96 127.69 1.14 1.77 16 18 C 0.06 0.86 5.07 86.30 0.44 1.29 16 19 C 0.13 2.39 5.60 86.38 0.48 2.87 16 20 N -0.70 -9.29 5.56 -463.08 -2.57 -11.86 16 21 C 0.53 9.39 7.25 87.66 0.64 10.02 16 22 O -0.57 -15.88 16.26 -3.03 -0.05 -15.93 16 23 C -0.18 -1.62 6.18 -11.54 -0.07 -1.69 16 24 H 0.19 0.01 8.14 -2.39 -0.02 0.00 16 25 C -0.13 -1.04 10.01 30.58 0.31 -0.73 16 26 C 0.20 2.70 5.19 30.58 0.16 2.86 16 27 F -0.18 -3.83 17.13 44.97 0.77 -3.06 16 28 F -0.16 -2.08 17.60 44.97 0.79 -1.29 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.06 1.23 7.22 -2.39 -0.02 1.21 16 32 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 33 H 0.10 2.09 6.44 -2.39 -0.02 2.08 16 34 H 0.02 1.13 8.07 -2.38 -0.02 1.11 16 35 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.12 2.52 7.19 -2.39 -0.02 2.50 16 38 H 0.09 1.74 7.17 -2.39 -0.02 1.72 16 39 H 0.07 1.82 6.47 -2.39 -0.02 1.80 16 40 H 0.05 1.88 5.82 -2.38 -0.01 1.87 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 1.22 7.93 -2.39 -0.02 1.20 16 43 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 44 H 0.06 1.35 6.55 -2.39 -0.02 1.34 16 45 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.42 2.11 8.47 -92.70 -0.79 1.33 16 47 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.12 1.46 7.67 -2.38 -0.02 1.44 16 Total: -1.00 -88.15 404.95 1.69 -86.47 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.20 Total: 6.77 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 6.48 Total: 23.57 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -8.49 Total: -114.15 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.09 Total: -46.18 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 1.56 Total: -4.35 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -88.15 1.69 -86.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390760209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.597 kcal (2) G-P(sol) polarization free energy of solvation -88.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds