Wall clock time and date at job start Wed Apr 1 2020 04:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47260 * 2 1 4 4 C 1.46500 * 119.99822 * 90.00325 * 3 2 1 5 5 C 1.50706 * 109.46953 * 89.99511 * 4 3 2 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99398 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 C 1.34777 * 120.00054 * 270.00002 * 3 2 1 14 14 O 1.21275 * 119.99803 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00130 * 0.02562 * 13 3 2 16 16 N 1.46893 * 109.47329 * 180.02562 * 15 13 3 17 17 C 1.46854 * 110.99756 * 294.21209 * 16 15 13 18 18 C 1.53039 * 109.52496 * 174.15941 * 17 16 15 19 19 C 1.53124 * 109.27632 * 59.17622 * 18 17 16 20 20 C 1.53122 * 109.15958 * 302.34652 * 19 18 17 21 21 H 1.08997 * 109.50267 * 297.71029 * 20 19 18 22 22 N 1.46501 * 109.49814 * 177.59601 * 20 19 18 23 23 C 1.34779 * 120.00335 * 85.19905 * 22 20 19 24 24 O 1.21280 * 119.99539 * 359.97438 * 23 22 20 25 25 C 1.50691 * 120.00141 * 179.97438 * 23 22 20 26 26 F 1.39892 * 109.47346 * 55.00232 * 25 23 22 27 27 F 1.39907 * 109.46884 * 175.00321 * 25 23 22 28 28 C 1.46838 * 111.00297 * 170.00075 * 16 15 13 29 29 H 1.08996 * 109.47493 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46784 * 300.00210 * 1 2 3 31 31 H 1.08999 * 109.46913 * 59.99787 * 1 2 3 32 32 H 1.09001 * 109.46925 * 240.00322 * 2 1 3 33 33 H 1.09002 * 109.47475 * 120.00701 * 2 1 3 34 34 H 1.09000 * 109.47175 * 329.99940 * 4 3 2 35 35 H 1.08993 * 109.47452 * 209.99730 * 4 3 2 36 36 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.47151 * 299.99768 * 15 13 3 38 38 H 1.08998 * 109.47139 * 59.99459 * 15 13 3 39 39 H 1.09005 * 109.45982 * 294.17199 * 17 16 15 40 40 H 1.09002 * 109.46157 * 54.14222 * 17 16 15 41 41 H 1.08997 * 109.50057 * 299.24242 * 18 17 16 42 42 H 1.08997 * 109.53758 * 179.13715 * 18 17 16 43 43 H 1.09004 * 109.52285 * 182.44240 * 19 18 17 44 44 H 1.08992 * 109.52079 * 62.25391 * 19 18 17 45 45 H 0.97000 * 119.99890 * 265.19661 * 22 20 19 46 46 H 1.08999 * 109.47513 * 294.99734 * 25 23 22 47 47 H 1.09001 * 109.46380 * 305.85426 * 28 16 15 48 48 H 1.09000 * 109.46391 * 65.82281 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6859 1.8348 1.7038 6 1 4.3430 1.2306 1.0957 7 6 4.1495 2.3902 2.8775 8 7 5.3917 2.1838 3.2568 9 14 3.0134 3.4358 3.9288 10 1 3.1160 4.8559 3.5070 11 1 1.6137 2.9691 3.7597 12 1 3.4070 3.3134 5.3554 13 6 2.2430 2.0166 -1.1672 14 8 2.6477 3.1598 -1.1671 15 6 1.9913 1.3064 -2.4723 16 7 2.3102 2.2061 -3.5888 17 6 1.3887 3.3490 -3.6234 18 6 1.8377 4.3356 -4.7037 19 6 1.8527 3.6268 -6.0609 20 6 2.7825 2.4126 -5.9835 21 1 3.7986 2.7453 -5.7716 22 7 2.7581 1.6958 -7.2610 23 6 3.5670 2.0836 -8.2669 24 8 4.3147 3.0262 -8.1146 25 6 3.5422 1.3459 -9.5807 26 9 2.2345 1.3205 -10.0768 27 9 4.3760 1.9966 -10.4966 28 6 2.3060 1.4818 -4.8661 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5818 1.6877 2.0284 35 1 2.0957 3.1410 1.1385 36 1 5.7180 2.5749 4.0824 37 1 2.6212 0.4187 -2.5303 38 1 0.9432 1.0126 -2.5298 39 1 0.3819 2.9970 -3.8488 40 1 1.3907 3.8466 -2.6536 41 1 2.8390 4.6984 -4.4716 42 1 1.1452 5.1765 -4.7400 43 1 2.2135 4.3136 -6.8266 44 1 0.8442 3.2980 -6.3112 45 1 2.1597 0.9421 -7.3828 46 1 3.8939 0.3251 -9.4309 47 1 2.9742 0.6233 -4.7990 48 1 1.2950 1.1386 -5.0857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001391384245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:35 Heat of formation + Delta-G solvation = -158.418917 kcal Electronic energy + Delta-G solvation = -31329.427138 eV Core-core repulsion = 26669.481269 eV Total energy + Delta-G solvation = -4659.945870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.62389 -47.64817 -40.49991 -39.55390 -38.21291 -35.57514 -35.03243 -33.13427 -32.62214 -30.59026 -30.35869 -28.73019 -27.90399 -26.70376 -23.66829 -23.19171 -23.02477 -21.99316 -21.21688 -20.28028 -18.83115 -18.43647 -18.23739 -17.87490 -16.93608 -16.71728 -16.47112 -15.99934 -15.38418 -15.27907 -15.22832 -14.93229 -14.48583 -14.44152 -14.22119 -13.99935 -13.87618 -13.71484 -13.58995 -13.49673 -13.43230 -13.04878 -12.61803 -12.61129 -12.53126 -12.27524 -11.94144 -11.76189 -11.57918 -11.45227 -11.12974 -11.01827 -10.86580 -10.80770 -10.67606 -10.50981 -10.34278 -10.14665 -9.60232 -9.53223 -9.01838 -8.58919 -8.32128 -7.72781 -6.08507 -4.07134 1.70737 2.07994 3.26544 3.28661 3.31352 3.34150 3.36140 3.47174 3.67495 4.03808 4.07046 4.21052 4.39190 4.44719 4.56145 4.85665 4.86694 5.02998 5.08116 5.15897 5.21217 5.25172 5.31353 5.40033 5.44698 5.47260 5.53158 5.64347 5.67399 5.80927 5.82929 5.89022 5.92111 6.08864 6.16859 6.29476 6.32605 6.65537 6.74015 6.86720 6.96196 7.01762 7.33747 7.42260 7.61040 8.23606 8.47085 8.93577 8.99549 9.51737 11.04956 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002149 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.750308 B =13024.457553 C =13401.928960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.267 1.267 12 H -0.285 1.285 13 C 0.509 3.491 14 O -0.520 6.520 15 C 0.040 3.960 16 N -0.515 5.515 17 C 0.048 3.952 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.146 3.854 21 H 0.106 0.894 22 N -0.709 5.709 23 C 0.473 3.527 24 O -0.495 6.495 25 C 0.258 3.742 26 F -0.189 7.189 27 F -0.175 7.175 28 C 0.052 3.948 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.026 0.974 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.404 0.596 46 H 0.138 0.862 47 H 0.083 0.917 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 -7.553 -22.587 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.192 1.192 12 H -0.211 1.211 13 C 0.295 3.705 14 O -0.396 6.396 15 C -0.090 4.090 16 N -0.239 5.239 17 C -0.079 4.079 18 C -0.150 4.150 19 C -0.168 4.168 20 C 0.042 3.958 21 H 0.124 0.876 22 N -0.361 5.361 23 C 0.253 3.747 24 O -0.367 6.367 25 C 0.201 3.799 26 F -0.170 7.170 27 F -0.156 7.156 28 C -0.076 4.076 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.239 0.761 46 H 0.155 0.845 47 H 0.101 0.899 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.772 -5.991 -22.253 25.439 hybrid contribution -1.581 -0.326 0.342 1.650 sum -12.353 -6.317 -21.911 25.935 Atomic orbital electron populations 1.22234 0.96864 1.01540 1.02136 1.21432 0.93274 0.84000 1.03090 1.47947 1.64418 1.13362 1.06991 1.19625 0.97302 0.93315 0.79997 1.21323 0.95317 1.32882 1.07052 0.90764 1.24863 0.94979 0.95819 0.97388 1.69899 1.15108 1.44977 1.23583 0.86855 0.81397 0.81654 0.79781 1.19919 1.19151 1.21111 1.20090 0.78653 0.87141 0.84656 1.90648 1.44342 1.17924 1.86685 1.22033 1.00470 0.96081 0.90457 1.61381 1.53096 1.08607 1.00849 1.22351 0.91831 0.91789 1.01919 1.21507 1.03292 0.97513 0.92654 1.21989 0.99078 0.96989 0.98776 1.21106 1.02509 0.91712 0.80444 0.87630 1.45922 1.41184 1.35330 1.13662 1.21029 0.82009 0.85542 0.86080 1.90861 1.38312 1.26309 1.81243 1.21669 0.74885 0.98507 0.84869 1.93057 1.37460 1.97571 1.88953 1.93076 1.71036 1.83996 1.67539 1.22232 0.99961 0.96186 0.89258 0.91990 0.92166 0.93205 0.91572 0.89651 0.95362 0.94663 0.92580 0.88204 0.92409 0.95586 0.87905 0.90268 0.91038 0.91254 0.92002 0.76102 0.84476 0.89908 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.11 1.52 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -11.54 2.46 -175.06 -0.43 -11.97 16 4 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 5 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 9 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.51 9.73 7.35 -10.99 -0.08 9.65 16 14 O -0.52 -12.20 13.90 5.56 0.08 -12.12 16 15 C 0.04 0.54 4.00 -4.98 -0.02 0.52 16 16 N -0.51 -6.77 4.40 -236.12 -1.04 -7.81 16 17 C 0.05 0.62 5.11 -3.83 -0.02 0.61 16 18 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 19 C -0.13 -1.29 5.58 -26.60 -0.15 -1.44 16 20 C 0.15 1.41 2.62 -67.85 -0.18 1.23 16 21 H 0.11 1.33 7.58 -51.93 -0.39 0.93 16 22 N -0.71 -4.96 5.08 -53.73 -0.27 -5.24 16 23 C 0.47 4.27 7.60 -10.99 -0.08 4.19 16 24 O -0.49 -6.83 16.28 5.56 0.09 -6.74 16 25 C 0.26 1.61 5.72 36.00 0.21 1.81 16 26 F -0.19 -1.28 17.32 2.25 0.04 -1.24 16 27 F -0.18 -1.66 16.95 2.25 0.04 -1.62 16 28 C 0.05 0.48 4.93 -3.84 -0.02 0.46 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.53 7.22 -51.93 -0.37 0.16 16 32 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 33 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 34 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 35 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.10 1.19 7.25 -51.93 -0.38 0.81 16 38 H 0.06 0.64 7.17 -51.93 -0.37 0.26 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 1.67 5.78 -51.93 -0.30 1.37 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.40 1.50 8.60 -40.82 -0.35 1.15 16 46 H 0.14 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 0.68 8.01 -51.93 -0.42 0.26 16 48 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -36.85 393.11 -7.54 -44.39 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.46 Total: -0.88 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.61 Total: 7.39 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.97 Total: -51.85 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.17 Total: -18.86 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.85 -7.54 -44.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391384245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.034 kcal (2) G-P(sol) polarization free energy of solvation -36.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds