Wall clock time and date at job start Wed Apr 1 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47260 * 2 1 4 4 C 1.46500 * 119.99822 * 90.00325 * 3 2 1 5 5 C 1.50706 * 109.46953 * 89.99511 * 4 3 2 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99398 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 C 1.34777 * 120.00054 * 270.00002 * 3 2 1 14 14 O 1.21275 * 119.99803 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00130 * 0.02562 * 13 3 2 16 16 N 1.46893 * 109.47329 * 180.02562 * 15 13 3 17 17 C 1.46854 * 110.99756 * 294.21209 * 16 15 13 18 18 C 1.53039 * 109.52496 * 174.15941 * 17 16 15 19 19 C 1.53124 * 109.27632 * 59.17622 * 18 17 16 20 20 C 1.53122 * 109.15958 * 302.34652 * 19 18 17 21 21 H 1.08997 * 109.50267 * 297.71029 * 20 19 18 22 22 N 1.46501 * 109.49814 * 177.59601 * 20 19 18 23 23 C 1.34779 * 120.00335 * 85.19905 * 22 20 19 24 24 O 1.21280 * 119.99539 * 359.97438 * 23 22 20 25 25 C 1.50691 * 120.00141 * 179.97438 * 23 22 20 26 26 F 1.39892 * 109.47346 * 55.00232 * 25 23 22 27 27 F 1.39907 * 109.46884 * 175.00321 * 25 23 22 28 28 C 1.46838 * 111.00297 * 170.00075 * 16 15 13 29 29 H 1.08996 * 109.47493 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46784 * 300.00210 * 1 2 3 31 31 H 1.08999 * 109.46913 * 59.99787 * 1 2 3 32 32 H 1.09001 * 109.46925 * 240.00322 * 2 1 3 33 33 H 1.09002 * 109.47475 * 120.00701 * 2 1 3 34 34 H 1.09000 * 109.47175 * 329.99940 * 4 3 2 35 35 H 1.08993 * 109.47452 * 209.99730 * 4 3 2 36 36 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.47151 * 299.99768 * 15 13 3 38 38 H 1.08998 * 109.47139 * 59.99459 * 15 13 3 39 39 H 1.09005 * 109.45982 * 294.17199 * 17 16 15 40 40 H 1.09002 * 109.46157 * 54.14222 * 17 16 15 41 41 H 1.08997 * 109.50057 * 299.24242 * 18 17 16 42 42 H 1.08997 * 109.53758 * 179.13715 * 18 17 16 43 43 H 1.09004 * 109.52285 * 182.44240 * 19 18 17 44 44 H 1.08992 * 109.52079 * 62.25391 * 19 18 17 45 45 H 0.97000 * 119.99890 * 265.19661 * 22 20 19 46 46 H 1.08999 * 109.47513 * 294.99734 * 25 23 22 47 47 H 1.09001 * 109.46380 * 305.85426 * 28 16 15 48 48 H 1.09000 * 109.46391 * 65.82281 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6859 1.8348 1.7038 6 1 4.3430 1.2306 1.0957 7 6 4.1495 2.3902 2.8775 8 7 5.3917 2.1838 3.2568 9 14 3.0134 3.4358 3.9288 10 1 3.1160 4.8559 3.5070 11 1 1.6137 2.9691 3.7597 12 1 3.4070 3.3134 5.3554 13 6 2.2430 2.0166 -1.1672 14 8 2.6477 3.1598 -1.1671 15 6 1.9913 1.3064 -2.4723 16 7 2.3102 2.2061 -3.5888 17 6 1.3887 3.3490 -3.6234 18 6 1.8377 4.3356 -4.7037 19 6 1.8527 3.6268 -6.0609 20 6 2.7825 2.4126 -5.9835 21 1 3.7986 2.7453 -5.7716 22 7 2.7581 1.6958 -7.2610 23 6 3.5670 2.0836 -8.2669 24 8 4.3147 3.0262 -8.1146 25 6 3.5422 1.3459 -9.5807 26 9 2.2345 1.3205 -10.0768 27 9 4.3760 1.9966 -10.4966 28 6 2.3060 1.4818 -4.8661 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5818 1.6877 2.0284 35 1 2.0957 3.1410 1.1385 36 1 5.7180 2.5749 4.0824 37 1 2.6212 0.4187 -2.5303 38 1 0.9432 1.0126 -2.5298 39 1 0.3819 2.9970 -3.8488 40 1 1.3907 3.8466 -2.6536 41 1 2.8390 4.6984 -4.4716 42 1 1.1452 5.1765 -4.7400 43 1 2.2135 4.3136 -6.8266 44 1 0.8442 3.2980 -6.3112 45 1 2.1597 0.9421 -7.3828 46 1 3.8939 0.3251 -9.4309 47 1 2.9742 0.6233 -4.7990 48 1 1.2950 1.1386 -5.0857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391384245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:28 Heat of formation + Delta-G solvation = -187.435726 kcal Electronic energy + Delta-G solvation = -31330.685402 eV Core-core repulsion = 26669.481269 eV Total energy + Delta-G solvation = -4661.204133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -50.17072 -48.21345 -41.37939 -40.75589 -39.27228 -36.96519 -36.01420 -34.86246 -33.93867 -31.88183 -31.31601 -30.12185 -28.62019 -28.05632 -24.91150 -24.28967 -24.00141 -23.44287 -21.99403 -21.11836 -19.85783 -19.44483 -19.08868 -18.76952 -18.51626 -17.96420 -17.46926 -16.97203 -16.63460 -16.53418 -16.03266 -15.97033 -15.81198 -15.50402 -15.03009 -14.88909 -14.78883 -14.64523 -14.61147 -14.54012 -14.45216 -14.26822 -14.06689 -13.74141 -13.53594 -13.35522 -13.18640 -13.16427 -12.81176 -12.52665 -12.42826 -12.37094 -12.07838 -11.96095 -11.89684 -11.81223 -11.71328 -11.59274 -11.10676 -10.82727 -10.49041 -10.33343 -9.39254 -9.19875 -8.33374 -6.37678 1.01994 1.31381 1.36058 1.43349 1.44176 1.87574 2.25516 2.30842 2.81582 3.00616 3.01538 3.13875 3.57377 3.66316 3.68646 3.75677 3.82585 3.98612 4.10732 4.20099 4.25986 4.29130 4.42961 4.46102 4.52705 4.57044 4.65395 4.67509 4.81642 4.84040 4.93370 4.94004 4.97881 5.03729 5.04376 5.13080 5.21842 5.35397 5.41643 5.48926 5.70004 5.93685 6.13804 6.16053 6.26715 6.64098 6.79889 6.84524 7.23635 7.53065 8.83734 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002149 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.750308 B =13024.457553 C =13401.928960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.028 0.972 7 C 0.008 3.992 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.237 1.237 12 H -0.275 1.275 13 C 0.496 3.504 14 O -0.577 6.577 15 C 0.056 3.944 16 N -0.547 5.547 17 C 0.055 3.945 18 C -0.109 4.109 19 C -0.120 4.120 20 C 0.150 3.850 21 H 0.067 0.933 22 N -0.687 5.687 23 C 0.468 3.532 24 O -0.553 6.553 25 C 0.265 3.735 26 F -0.189 7.189 27 F -0.196 7.196 28 C 0.059 3.941 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.015 0.985 36 H 0.267 0.733 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.426 0.574 46 H 0.195 0.805 47 H 0.097 0.903 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.707 -10.120 -24.082 30.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.046 0.954 7 C -0.189 4.189 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.205 1.205 11 H -0.160 1.160 12 H -0.201 1.201 13 C 0.284 3.716 14 O -0.457 6.457 15 C -0.074 4.074 16 N -0.273 5.273 17 C -0.073 4.073 18 C -0.147 4.147 19 C -0.159 4.159 20 C 0.045 3.955 21 H 0.085 0.915 22 N -0.340 5.340 23 C 0.251 3.749 24 O -0.430 6.430 25 C 0.209 3.791 26 F -0.170 7.170 27 F -0.178 7.178 28 C -0.069 4.069 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.265 0.735 46 H 0.212 0.788 47 H 0.115 0.885 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.403 -8.655 -23.780 29.118 hybrid contribution -0.396 0.439 0.761 0.964 sum -14.799 -8.216 -23.019 28.572 Atomic orbital electron populations 1.22150 0.93981 1.03599 1.01993 1.21775 0.95555 0.81114 1.03983 1.48078 1.64507 1.15255 1.05694 1.19226 0.94554 0.92903 0.82797 1.21581 0.97164 1.31812 1.06462 0.95393 1.25866 0.96693 0.97283 0.99085 1.70058 1.17434 1.46696 1.24521 0.85722 0.80538 0.78928 0.77778 1.20457 1.16010 1.20065 1.21257 0.77152 0.86778 0.86403 1.90627 1.46719 1.20633 1.87675 1.21946 1.03050 0.95443 0.86997 1.61228 1.54090 1.09398 1.02573 1.22179 0.93253 0.91887 0.99939 1.21449 1.01570 0.98043 0.93643 1.21891 1.00401 0.96671 0.96924 1.20860 1.00430 0.92280 0.81976 0.91461 1.45682 1.40789 1.35313 1.12253 1.21662 0.81098 0.84843 0.87331 1.90847 1.40745 1.28959 1.82454 1.21998 0.74610 1.00076 0.82451 1.93059 1.37602 1.97593 1.88783 1.93034 1.71785 1.84759 1.68189 1.22252 1.02311 0.95625 0.86699 0.88736 0.93807 0.91883 0.88304 0.91268 0.93564 0.96703 0.92374 0.86171 0.88602 0.92821 0.91936 0.93690 0.89978 0.92878 0.89393 0.73545 0.78829 0.88458 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.24 71.98 0.74 -2.29 16 2 C 0.10 2.57 5.93 86.38 0.51 3.09 16 3 N -0.60 -23.16 2.46 -826.15 -2.03 -25.19 16 4 C 0.23 10.95 4.23 85.63 0.36 11.31 16 5 C -0.53 -31.31 9.94 25.60 0.25 -31.06 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 7 C 0.01 0.50 5.47 84.66 0.46 0.96 16 8 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 9 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.50 18.90 7.35 87.66 0.64 19.55 16 14 O -0.58 -28.29 13.90 -3.02 -0.04 -28.33 16 15 C 0.06 1.34 4.00 85.56 0.34 1.68 16 16 N -0.55 -13.49 4.40 -900.93 -3.96 -17.45 16 17 C 0.05 1.37 5.11 86.33 0.44 1.81 16 18 C -0.11 -2.55 6.09 30.65 0.19 -2.36 16 19 C -0.12 -2.25 5.58 30.68 0.17 -2.08 16 20 C 0.15 2.67 2.62 45.04 0.12 2.79 16 21 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 22 N -0.69 -7.80 5.08 -442.29 -2.25 -10.05 16 23 C 0.47 7.83 7.60 87.65 0.67 8.49 16 24 O -0.55 -15.73 16.28 -3.03 -0.05 -15.78 16 25 C 0.27 2.60 5.72 71.23 0.41 3.01 16 26 F -0.19 -1.98 17.32 44.97 0.78 -1.20 16 27 F -0.20 -3.50 16.95 44.97 0.76 -2.74 16 28 C 0.06 0.87 4.93 86.33 0.43 1.30 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.05 7.22 -2.39 -0.02 1.03 16 32 H 0.10 1.93 6.44 -2.39 -0.02 1.92 16 33 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 34 H 0.05 2.05 7.13 -2.39 -0.02 2.03 16 35 H 0.01 0.78 6.85 -2.39 -0.02 0.76 16 36 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 37 H 0.12 2.40 7.25 -2.38 -0.02 2.38 16 38 H 0.10 1.60 7.17 -2.39 -0.02 1.58 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.06 2.10 5.78 -2.39 -0.01 2.08 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.43 1.24 8.60 -92.71 -0.80 0.44 16 46 H 0.20 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.10 1.20 8.01 -2.39 -0.02 1.18 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -90.09 393.11 1.25 -88.83 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.13 Total: 9.19 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 5.73 Total: 16.20 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -7.94 Total: -112.89 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.09 Total: -44.11 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.54 Total: -3.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -90.09 1.25 -88.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391384245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.602 kcal (2) G-P(sol) polarization free energy of solvation -90.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds