Wall clock time and date at job start Wed Apr 1 2020 04:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46499 * 119.99661 * 269.99401 * 3 2 1 5 5 C 1.50699 * 109.46902 * 90.00395 * 4 3 2 6 6 H 1.07998 * 120.00043 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00065 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99381 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00003 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.46980 * 60.00114 * 9 7 5 11 11 H 1.48504 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46981 * 299.99699 * 9 7 5 13 13 C 1.34774 * 120.00336 * 90.00128 * 3 2 1 14 14 O 1.21274 * 120.00360 * 179.97438 * 13 3 2 15 15 C 1.50708 * 119.99656 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46735 * 180.02562 * 15 13 3 17 17 C 1.46898 * 110.99926 * 179.97438 * 16 15 13 18 18 H 1.09004 * 110.29240 * 325.70218 * 17 16 15 19 19 C 1.54008 * 110.32562 * 87.83286 * 17 16 15 20 20 N 1.47490 * 107.08102 * 117.58946 * 19 17 16 21 21 C 1.34780 * 127.03253 * 205.48313 * 20 19 17 22 22 O 1.21280 * 119.99646 * 0.02562 * 21 20 19 23 23 C 1.50690 * 120.00179 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47232 * 185.00089 * 23 21 20 25 25 F 1.39905 * 109.47135 * 305.00102 * 23 21 20 26 26 C 1.48120 * 105.93385 * 25.44588 * 20 19 17 27 27 C 1.54621 * 110.32988 * 203.56321 * 17 16 15 28 28 H 1.08999 * 110.73475 * 337.60153 * 27 17 16 29 29 C 1.53000 * 110.73594 * 100.92286 * 27 17 16 30 30 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 34 34 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 35 35 H 1.09000 * 109.47241 * 210.00440 * 4 3 2 36 36 H 1.09000 * 109.47127 * 330.00198 * 4 3 2 37 37 H 0.97003 * 119.99012 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46961 * 300.00007 * 15 13 3 39 39 H 1.08990 * 109.47216 * 60.00318 * 15 13 3 40 40 H 1.00901 * 111.00261 * 303.95391 * 16 15 13 41 41 H 1.08995 * 109.91366 * 236.94822 * 19 17 16 42 42 H 1.08996 * 109.91355 * 358.22903 * 19 17 16 43 43 H 1.08998 * 109.47357 * 64.99679 * 23 21 20 44 44 H 1.08999 * 110.65873 * 79.15513 * 26 20 19 45 45 H 1.08998 * 110.65829 * 202.09993 * 26 20 19 46 46 H 1.08995 * 109.47343 * 59.99935 * 29 27 17 47 47 H 1.08998 * 109.47134 * 180.02562 * 29 27 17 48 48 H 1.09007 * 109.47454 * 299.99719 * 29 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 1.0068 2.7821 -1.7039 6 1 0.1160 2.7253 -1.0959 7 6 0.9953 3.5055 -2.8776 8 7 2.0803 3.5751 -3.6177 9 14 -0.5611 4.3866 -3.4166 10 1 -0.9533 5.3764 -2.3814 11 1 -0.3136 5.0865 -4.7028 12 1 -1.6538 3.3969 -3.5945 13 6 2.2430 2.0167 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3091 2.2066 3.5888 17 6 2.0746 1.5468 4.8802 18 1 1.2237 0.8692 4.8095 19 6 3.3337 0.7798 5.3254 20 7 3.7893 1.3910 6.5881 21 6 5.0431 1.3933 7.0827 22 8 5.9378 0.8509 6.4694 23 6 5.3332 2.0707 8.3971 24 9 6.7100 2.0403 8.6435 25 9 4.8984 3.3994 8.3430 26 6 2.5874 2.0024 7.2009 27 6 1.8318 2.6004 5.9855 28 1 2.2579 3.5627 5.7017 29 6 0.3378 2.7354 6.2864 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 3.0645 2.7984 -1.1385 36 1 2.5507 1.3450 -2.0283 37 1 2.0721 4.0837 -4.4436 38 1 0.9432 1.0126 2.5298 39 1 2.6212 0.4188 2.5303 40 1 3.2574 2.5448 3.5221 41 1 3.0907 -0.2702 5.4877 42 1 4.1113 0.8708 4.5671 43 1 4.8092 1.5494 9.1981 44 1 1.9797 1.2442 7.6948 45 1 2.8705 2.7851 7.9046 46 1 -0.0532 1.7754 6.6234 47 1 0.1903 3.4822 7.0666 48 1 -0.1884 3.0451 5.3834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001393728990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:25 Heat of formation + Delta-G solvation = -156.716618 kcal Electronic energy + Delta-G solvation = -31409.279811 eV Core-core repulsion = 26749.407759 eV Total energy + Delta-G solvation = -4659.872052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.61964 -47.64469 -40.60346 -39.18741 -38.32972 -35.45132 -34.83483 -32.99655 -32.66913 -30.19050 -29.95035 -28.43606 -27.24059 -26.68031 -25.44890 -23.11795 -22.76963 -22.15379 -20.84123 -20.50509 -18.68205 -18.39819 -18.15911 -17.69943 -16.85552 -16.54485 -16.30438 -16.17224 -15.71927 -15.27205 -15.08683 -14.64440 -14.42299 -14.35482 -14.19413 -13.98035 -13.82508 -13.69907 -13.33087 -13.20498 -13.04621 -12.92244 -12.69199 -12.63800 -12.36985 -12.26018 -12.13226 -11.84924 -11.48390 -11.44686 -11.33276 -11.17546 -11.07568 -10.91224 -10.72456 -10.49863 -10.40693 -10.04909 -9.58540 -9.43864 -8.93702 -8.42045 -8.40230 -7.66522 -6.02462 -4.06445 1.67036 1.98505 3.21117 3.32155 3.36542 3.37327 3.43170 3.43942 3.65604 4.02890 4.03527 4.13069 4.20912 4.32935 4.46876 4.63336 4.76176 4.85889 4.96942 5.05616 5.15715 5.20425 5.26855 5.30044 5.32173 5.36421 5.47524 5.49533 5.59784 5.65809 5.75875 5.82162 5.91516 6.01240 6.09023 6.29015 6.70802 6.74897 6.82117 7.09707 7.23565 7.30105 7.45221 7.56560 7.94037 8.25589 8.42365 8.92295 9.10841 9.58144 11.05794 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.002231 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.693409 B =12547.463334 C =12699.915857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.528 6.528 15 C 0.039 3.961 16 N -0.658 5.658 17 C 0.080 3.920 18 H 0.100 0.900 19 C 0.075 3.925 20 N -0.605 5.605 21 C 0.488 3.512 22 O -0.501 6.501 23 C 0.263 3.737 24 F -0.174 7.174 25 F -0.184 7.184 26 C 0.087 3.913 27 C -0.092 4.092 28 H 0.097 0.903 29 C -0.138 4.138 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.355 0.645 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 -9.382 26.078 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.289 3.711 14 O -0.404 6.404 15 C -0.094 4.094 16 N -0.290 5.290 17 C -0.032 4.032 18 H 0.118 0.882 19 C -0.049 4.049 20 N -0.340 5.340 21 C 0.272 3.728 22 O -0.375 6.375 23 C 0.206 3.794 24 F -0.155 7.155 25 F -0.166 7.166 26 C -0.035 4.035 27 C -0.112 4.112 28 H 0.115 0.885 29 C -0.196 4.196 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.176 0.824 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.153 0.847 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.531 -8.642 25.541 27.007 hybrid contribution -0.112 -0.125 -0.390 0.424 sum -1.643 -8.767 25.151 26.686 Atomic orbital electron populations 1.22234 0.96310 1.00832 1.03438 1.21385 0.94585 0.83797 1.01554 1.48270 1.64045 1.13166 1.07737 1.19276 0.97536 0.92438 0.77972 1.21395 0.97472 1.31074 1.06112 0.92372 1.24943 0.96437 0.96293 0.96510 1.69927 1.27499 1.41694 1.14389 0.86582 0.83234 0.79924 0.77825 1.20175 1.21241 1.20311 1.20118 0.79144 0.86968 0.84838 1.90687 1.45545 1.17245 1.86889 1.21998 1.02503 0.94252 0.90599 1.60212 1.32943 1.36610 0.99270 1.22700 0.95884 0.94602 0.89971 0.88243 1.23128 0.97903 0.97833 0.86081 1.48645 1.07043 1.55059 1.23210 1.20695 0.82225 0.82420 0.87473 1.90848 1.43730 1.44344 1.58595 1.21534 0.79048 0.80693 0.98100 1.93075 1.31358 1.96317 1.94795 1.93050 1.88995 1.37001 1.97516 1.23081 0.85372 0.97994 0.97086 1.22317 0.96727 0.99809 0.92343 0.88464 1.21695 0.93672 1.01673 1.02540 0.90503 0.92871 0.93268 0.92249 0.90707 0.93975 0.95124 0.92714 0.88389 0.92975 0.82436 0.90612 0.89978 0.84675 0.89906 0.88991 0.92609 0.92247 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.11 1.70 5.98 -4.04 -0.02 1.67 16 3 N -0.60 -12.26 2.46 -175.06 -0.43 -12.69 16 4 C 0.25 6.38 5.20 -5.19 -0.03 6.36 16 5 C -0.52 -14.56 8.92 -34.44 -0.31 -14.87 16 6 H 0.06 1.61 7.42 -52.49 -0.39 1.22 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 C 0.50 10.09 7.71 -10.98 -0.08 10.00 16 14 O -0.53 -13.11 15.78 5.56 0.09 -13.02 16 15 C 0.04 0.53 4.56 -4.97 -0.02 0.50 16 16 N -0.66 -8.45 5.86 -106.53 -0.62 -9.07 16 17 C 0.08 0.69 2.89 -66.34 -0.19 0.50 16 18 H 0.10 0.72 7.54 -51.93 -0.39 0.33 16 19 C 0.07 0.66 6.59 -2.97 -0.02 0.64 16 20 N -0.61 -5.19 3.29 -169.66 -0.56 -5.75 16 21 C 0.49 5.12 7.72 -10.99 -0.08 5.03 16 22 O -0.50 -7.46 16.96 5.56 0.09 -7.36 16 23 C 0.26 1.98 5.14 36.00 0.18 2.17 16 24 F -0.17 -1.80 16.95 2.25 0.04 -1.76 16 25 F -0.18 -1.54 15.52 2.25 0.03 -1.50 16 26 C 0.09 0.49 6.33 -2.04 -0.01 0.48 16 27 C -0.09 -0.69 3.39 -88.65 -0.30 -0.99 16 28 H 0.10 0.93 8.06 -51.93 -0.42 0.52 16 29 C -0.14 -0.86 9.17 37.16 0.34 -0.52 16 30 H 0.08 1.36 7.26 -51.93 -0.38 0.99 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 7.22 -51.93 -0.37 0.31 16 33 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 34 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.10 1.19 7.12 -51.93 -0.37 0.82 16 39 H 0.05 0.60 7.40 -51.93 -0.38 0.21 16 40 H 0.35 5.09 7.89 -39.29 -0.31 4.78 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.92 7.51 -51.93 -0.39 0.53 16 43 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.29 8.02 -51.93 -0.42 -0.12 16 45 H 0.09 0.44 6.07 -51.93 -0.32 0.13 16 46 H 0.05 0.27 8.10 -51.93 -0.42 -0.16 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -36.20 398.52 -7.25 -43.45 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.35 Total: 0.30 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -0.27 Total: 10.52 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.88 Total: -53.45 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.18 Total: -20.38 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.07 Total: -3.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.20 -7.25 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001393728990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.270 kcal (2) G-P(sol) polarization free energy of solvation -36.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds