Wall clock time and date at job start Wed Apr 1 2020 04:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46499 * 119.99661 * 269.99401 * 3 2 1 5 5 C 1.50699 * 109.46902 * 90.00395 * 4 3 2 6 6 H 1.07998 * 120.00043 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00065 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99381 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00003 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.46980 * 60.00114 * 9 7 5 11 11 H 1.48504 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46981 * 299.99699 * 9 7 5 13 13 C 1.34774 * 120.00336 * 90.00128 * 3 2 1 14 14 O 1.21274 * 120.00360 * 179.97438 * 13 3 2 15 15 C 1.50708 * 119.99656 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46735 * 180.02562 * 15 13 3 17 17 C 1.46898 * 110.99926 * 179.97438 * 16 15 13 18 18 H 1.09004 * 110.29240 * 325.70218 * 17 16 15 19 19 C 1.54008 * 110.32562 * 87.83286 * 17 16 15 20 20 N 1.47490 * 107.08102 * 117.58946 * 19 17 16 21 21 C 1.34780 * 127.03253 * 205.48313 * 20 19 17 22 22 O 1.21280 * 119.99646 * 0.02562 * 21 20 19 23 23 C 1.50690 * 120.00179 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47232 * 185.00089 * 23 21 20 25 25 F 1.39905 * 109.47135 * 305.00102 * 23 21 20 26 26 C 1.48120 * 105.93385 * 25.44588 * 20 19 17 27 27 C 1.54621 * 110.32988 * 203.56321 * 17 16 15 28 28 H 1.08999 * 110.73475 * 337.60153 * 27 17 16 29 29 C 1.53000 * 110.73594 * 100.92286 * 27 17 16 30 30 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 34 34 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 35 35 H 1.09000 * 109.47241 * 210.00440 * 4 3 2 36 36 H 1.09000 * 109.47127 * 330.00198 * 4 3 2 37 37 H 0.97003 * 119.99012 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46961 * 300.00007 * 15 13 3 39 39 H 1.08990 * 109.47216 * 60.00318 * 15 13 3 40 40 H 1.00901 * 111.00261 * 303.95391 * 16 15 13 41 41 H 1.08995 * 109.91366 * 236.94822 * 19 17 16 42 42 H 1.08996 * 109.91355 * 358.22903 * 19 17 16 43 43 H 1.08998 * 109.47357 * 64.99679 * 23 21 20 44 44 H 1.08999 * 110.65873 * 79.15513 * 26 20 19 45 45 H 1.08998 * 110.65829 * 202.09993 * 26 20 19 46 46 H 1.08995 * 109.47343 * 59.99935 * 29 27 17 47 47 H 1.08998 * 109.47134 * 180.02562 * 29 27 17 48 48 H 1.09007 * 109.47454 * 299.99719 * 29 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 1.0068 2.7821 -1.7039 6 1 0.1160 2.7253 -1.0959 7 6 0.9953 3.5055 -2.8776 8 7 2.0803 3.5751 -3.6177 9 14 -0.5611 4.3866 -3.4166 10 1 -0.9533 5.3764 -2.3814 11 1 -0.3136 5.0865 -4.7028 12 1 -1.6538 3.3969 -3.5945 13 6 2.2430 2.0167 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3091 2.2066 3.5888 17 6 2.0746 1.5468 4.8802 18 1 1.2237 0.8692 4.8095 19 6 3.3337 0.7798 5.3254 20 7 3.7893 1.3910 6.5881 21 6 5.0431 1.3933 7.0827 22 8 5.9378 0.8509 6.4694 23 6 5.3332 2.0707 8.3971 24 9 6.7100 2.0403 8.6435 25 9 4.8984 3.3994 8.3430 26 6 2.5874 2.0024 7.2009 27 6 1.8318 2.6004 5.9855 28 1 2.2579 3.5627 5.7017 29 6 0.3378 2.7354 6.2864 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 3.0645 2.7984 -1.1385 36 1 2.5507 1.3450 -2.0283 37 1 2.0721 4.0837 -4.4436 38 1 0.9432 1.0126 2.5298 39 1 2.6212 0.4188 2.5303 40 1 3.2574 2.5448 3.5221 41 1 3.0907 -0.2702 5.4877 42 1 4.1113 0.8708 4.5671 43 1 4.8092 1.5494 9.1981 44 1 1.9797 1.2442 7.6948 45 1 2.8705 2.7851 7.9046 46 1 -0.0532 1.7754 6.6234 47 1 0.1903 3.4822 7.0666 48 1 -0.1884 3.0451 5.3834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001393728990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:21 Heat of formation + Delta-G solvation = -183.791380 kcal Electronic energy + Delta-G solvation = -31410.453861 eV Core-core repulsion = 26749.407759 eV Total energy + Delta-G solvation = -4661.046102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -50.26300 -48.30774 -41.36388 -40.65621 -39.21588 -36.99737 -35.90436 -34.82423 -33.61592 -31.55608 -30.90325 -29.69637 -28.48899 -27.27828 -26.66321 -24.56825 -24.09140 -23.30241 -21.49301 -21.21018 -19.87678 -19.27979 -18.79606 -18.68475 -18.41251 -17.98702 -17.33141 -17.21948 -16.85217 -16.62119 -16.18493 -15.81934 -15.54885 -15.31820 -15.08723 -14.81627 -14.71217 -14.58376 -14.55070 -14.45312 -14.04768 -13.86506 -13.75926 -13.47994 -13.45396 -13.32027 -13.27210 -13.07747 -12.98095 -12.86350 -12.65024 -12.50285 -12.13480 -12.07627 -11.93547 -11.75991 -11.67796 -11.64043 -11.17421 -10.62419 -10.56779 -10.13092 -9.43901 -9.33498 -8.20729 -6.34068 0.91239 1.33975 1.35667 1.40326 1.47238 1.86023 2.26901 2.41983 2.65065 2.91829 3.08647 3.13070 3.42827 3.47220 3.59800 3.67927 3.76192 4.04780 4.08079 4.12708 4.30021 4.35414 4.42292 4.47293 4.53949 4.62469 4.64059 4.68081 4.75726 4.83228 4.93830 5.02481 5.04743 5.08078 5.15045 5.23256 5.35795 5.51234 5.54357 5.61656 5.85724 5.97682 6.07641 6.08811 6.20027 6.55942 6.73311 6.84310 7.31114 7.53409 8.86466 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.002231 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.693409 B =12547.463334 C =12699.915857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.103 3.897 3 N -0.605 5.605 4 C 0.261 3.739 5 C -0.530 4.530 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.259 1.259 13 C 0.491 3.509 14 O -0.590 6.590 15 C 0.057 3.943 16 N -0.677 5.677 17 C 0.085 3.915 18 H 0.127 0.873 19 C 0.074 3.926 20 N -0.602 5.602 21 C 0.479 3.521 22 O -0.559 6.559 23 C 0.266 3.734 24 F -0.194 7.194 25 F -0.189 7.189 26 C 0.091 3.909 27 C -0.093 4.093 28 H 0.067 0.933 29 C -0.132 4.132 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.072 0.928 35 H -0.008 1.008 36 H 0.020 0.980 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.340 0.660 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.196 0.804 44 H 0.121 0.879 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -11.426 28.987 31.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.337 5.337 4 C 0.139 3.861 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.789 3.211 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.183 1.183 13 C 0.280 3.720 14 O -0.470 6.470 15 C -0.074 4.074 16 N -0.308 5.308 17 C -0.026 4.026 18 H 0.145 0.855 19 C -0.050 4.050 20 N -0.334 5.334 21 C 0.264 3.736 22 O -0.438 6.438 23 C 0.210 3.790 24 F -0.175 7.175 25 F -0.171 7.171 26 C -0.030 4.030 27 C -0.113 4.113 28 H 0.085 0.915 29 C -0.190 4.190 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.010 0.990 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.101 0.899 40 H 0.159 0.841 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.213 0.787 44 H 0.139 0.861 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.557 -10.730 28.486 30.779 hybrid contribution 0.816 0.512 -1.297 1.615 sum -3.740 -10.218 27.190 29.286 Atomic orbital electron populations 1.22156 0.95239 1.02887 1.01792 1.21762 0.95430 0.80905 1.03792 1.48299 1.64156 1.15092 1.06164 1.18710 0.95402 0.91464 0.80501 1.21660 0.97862 1.31219 1.06169 0.92530 1.25877 0.99828 0.97103 0.96673 1.70060 1.29699 1.42624 1.14871 0.85507 0.79498 0.78811 0.77255 1.20385 1.20604 1.18294 1.21349 0.77424 0.86576 0.86650 1.90650 1.48111 1.20287 1.87943 1.21906 1.04499 0.94122 0.86888 1.60240 1.32096 1.37620 1.00883 1.22849 0.96504 0.95176 0.88071 0.85491 1.23126 0.96951 0.99229 0.85711 1.48775 1.07405 1.54177 1.23056 1.21318 0.82059 0.81988 0.88241 1.90817 1.45422 1.47075 1.60464 1.21957 0.78477 0.80528 0.98036 1.93033 1.33295 1.96381 1.94770 1.93040 1.88911 1.37581 1.97523 1.23310 0.84137 0.99244 0.96270 1.22292 0.97948 0.98208 0.92842 0.91460 1.21650 0.92089 1.03350 1.01865 0.94493 0.88897 0.92505 0.87550 0.90933 0.98999 0.96205 0.92580 0.85744 0.89897 0.84082 0.88207 0.92959 0.78731 0.86103 0.87831 0.90073 0.91281 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.56 16 2 C 0.10 2.96 5.98 86.38 0.52 3.47 16 3 N -0.61 -25.17 2.46 -826.15 -2.03 -27.20 16 4 C 0.26 14.23 5.20 85.63 0.45 14.68 16 5 C -0.53 -30.62 8.92 25.60 0.23 -30.39 16 6 H 0.06 3.21 7.42 -2.91 -0.02 3.19 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 9 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.49 20.02 7.71 87.66 0.68 20.70 16 14 O -0.59 -31.00 15.78 -3.01 -0.05 -31.04 16 15 C 0.06 1.45 4.56 85.56 0.39 1.84 16 16 N -0.68 -16.92 5.86 -490.96 -2.88 -19.80 16 17 C 0.08 1.25 2.89 45.81 0.13 1.38 16 18 H 0.13 1.22 7.54 -2.38 -0.02 1.20 16 19 C 0.07 1.16 6.59 86.53 0.57 1.73 16 20 N -0.60 -9.05 3.29 -809.06 -2.66 -11.72 16 21 C 0.48 9.57 7.72 87.65 0.68 10.25 16 22 O -0.56 -17.04 16.96 -3.03 -0.05 -17.09 16 23 C 0.27 3.46 5.14 71.23 0.37 3.83 16 24 F -0.19 -3.87 16.95 44.97 0.76 -3.11 16 25 F -0.19 -2.81 15.52 44.97 0.70 -2.11 16 26 C 0.09 0.70 6.33 86.79 0.55 1.25 16 27 C -0.09 -1.18 3.39 -9.52 -0.03 -1.21 16 28 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 29 C -0.13 -1.22 9.17 71.98 0.66 -0.56 16 30 H 0.04 1.27 7.26 -2.39 -0.02 1.25 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 33 H 0.11 2.08 6.44 -2.39 -0.02 2.06 16 34 H 0.07 2.11 7.89 -2.39 -0.02 2.09 16 35 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 36 H 0.02 1.11 7.89 -2.39 -0.02 1.09 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.12 2.53 7.12 -2.39 -0.02 2.51 16 39 H 0.08 1.61 7.40 -2.39 -0.02 1.59 16 40 H 0.34 10.19 7.89 -89.69 -0.71 9.48 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.16 7.51 -2.39 -0.02 1.15 16 43 H 0.20 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.12 0.13 8.02 -2.39 -0.02 0.11 16 45 H 0.10 0.61 6.07 -2.39 -0.01 0.60 16 46 H 0.08 0.36 8.10 -2.39 -0.02 0.34 16 47 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -88.10 398.52 2.76 -85.34 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.28 Total: 12.41 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 6.38 Total: 24.08 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -7.28 Total: -115.95 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.10 Total: -48.14 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.46 Total: -5.22 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -88.10 2.76 -85.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001393728990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.448 kcal (2) G-P(sol) polarization free energy of solvation -88.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds