Wall clock time and date at job start Wed Apr 1 2020 04:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47150 * 2 1 4 4 C 1.46494 * 120.00612 * 270.00388 * 3 2 1 5 5 C 1.50694 * 109.47348 * 270.00033 * 4 3 2 6 6 H 1.08002 * 119.99724 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00202 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99952 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00141 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47354 * 59.99716 * 9 7 5 11 11 H 1.48502 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47054 * 299.99861 * 9 7 5 13 13 C 1.34781 * 119.99621 * 90.00326 * 3 2 1 14 14 O 1.21280 * 120.00176 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99973 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47252 * 180.02562 * 15 13 3 17 17 C 1.46894 * 111.00194 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.88892 * 31.11186 * 17 16 15 19 19 C 1.55132 * 111.19112 * 267.18210 * 17 16 15 20 20 N 1.47423 * 104.72496 * 279.19401 * 19 17 16 21 21 C 1.34777 * 125.65041 * 155.81864 * 20 19 17 22 22 O 1.21283 * 119.99750 * 359.71033 * 21 20 19 23 23 C 1.50702 * 119.99928 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47065 * 184.72501 * 23 21 20 25 25 F 1.39903 * 109.46873 * 304.71844 * 23 21 20 26 26 C 1.47023 * 108.69861 * 335.54967 * 20 19 17 27 27 C 1.54316 * 107.27276 * 1.28833 * 26 20 19 28 28 H 1.09000 * 110.72444 * 263.65268 * 27 26 20 29 29 C 1.52998 * 110.72099 * 140.55759 * 27 26 20 30 30 H 1.09001 * 109.46893 * 299.99266 * 1 2 3 31 31 H 1.08995 * 109.47259 * 59.99392 * 1 2 3 32 32 H 1.09004 * 109.46960 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46893 * 240.00733 * 2 1 3 34 34 H 1.08999 * 109.47695 * 120.00408 * 2 1 3 35 35 H 1.09001 * 109.46840 * 30.00213 * 4 3 2 36 36 H 1.09005 * 109.47037 * 149.99921 * 4 3 2 37 37 H 0.97001 * 119.99913 * 179.97438 * 8 7 5 38 38 H 1.08994 * 109.47436 * 59.99647 * 15 13 3 39 39 H 1.08998 * 109.46941 * 299.99667 * 15 13 3 40 40 H 1.00897 * 111.00180 * 56.03883 * 16 15 13 41 41 H 1.09004 * 110.50026 * 160.34802 * 19 17 16 42 42 H 1.09006 * 110.34295 * 37.95643 * 19 17 16 43 43 H 1.08998 * 109.47021 * 64.71733 * 23 21 20 44 44 H 1.08997 * 109.88157 * 120.70996 * 26 20 19 45 45 H 1.09005 * 109.88313 * 241.71766 * 26 20 19 46 46 H 1.08997 * 109.47687 * 61.45160 * 29 27 26 47 47 H 1.09006 * 109.47538 * 181.45301 * 29 27 26 48 48 H 1.08998 * 109.47206 * 301.45319 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1489 2.3900 -2.8779 8 7 3.3486 3.1253 -3.6184 9 14 5.9129 2.0959 -3.4177 10 1 6.1401 0.6392 -3.5950 11 1 6.1600 2.7952 -4.7042 12 1 6.8408 2.6192 -2.3831 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1597 1.1674 15 6 1.9924 1.3058 2.4723 16 7 2.3100 2.2059 3.5890 17 6 2.0777 1.5452 4.8802 18 1 2.2577 0.4728 4.8060 19 6 0.6472 1.8320 5.4076 20 7 0.7350 3.1699 6.0204 21 6 -0.2939 4.0227 6.1957 22 8 -1.4079 3.7120 5.8304 23 6 -0.0590 5.3645 6.8401 24 9 -1.2827 6.0209 7.0100 25 9 0.5498 5.1830 8.0866 26 6 2.1296 3.4172 6.4146 27 6 2.9507 2.1799 5.9948 28 1 3.0697 1.4934 6.8331 29 6 4.3148 2.5976 5.4420 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0282 36 1 2.0955 3.1412 -1.1381 37 1 3.6746 3.5159 -4.4443 38 1 2.6229 0.4185 2.5298 39 1 0.9446 1.0113 2.5303 40 1 1.7844 3.0646 3.5220 41 1 0.3597 1.0911 6.1536 42 1 -0.0663 1.8383 4.5835 43 1 0.5901 5.9650 6.2028 44 1 2.5074 4.3033 5.9046 45 1 2.1906 3.5567 7.4940 46 1 4.8764 3.1200 6.2165 47 1 4.8666 1.7114 5.1283 48 1 4.1734 3.2589 4.5872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001393728995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:38 Heat of formation + Delta-G solvation = -158.844548 kcal Electronic energy + Delta-G solvation = -31770.840636 eV Core-core repulsion = 27110.876310 eV Total energy + Delta-G solvation = -4659.964326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.53676 -47.55869 -40.67160 -39.18891 -38.31935 -35.41205 -34.70014 -32.95074 -32.65178 -30.26814 -30.07865 -28.32344 -27.29865 -26.56460 -25.44166 -23.12160 -22.99459 -22.26939 -20.50211 -20.30530 -18.68146 -18.41602 -18.08912 -17.61320 -16.86942 -16.63894 -16.31390 -16.15571 -15.72657 -15.31927 -14.82600 -14.70258 -14.36566 -14.23725 -14.14439 -13.94511 -13.85353 -13.60121 -13.46380 -13.37263 -13.10992 -12.78994 -12.74771 -12.60687 -12.45202 -12.09929 -12.02249 -11.89408 -11.65152 -11.48770 -11.20398 -11.12148 -10.99862 -10.91581 -10.75034 -10.53559 -10.33939 -10.14082 -9.66201 -9.29627 -8.95187 -8.45182 -8.43981 -7.68326 -6.05027 -4.09827 1.74894 2.06205 3.30305 3.30909 3.34961 3.35852 3.41871 3.54603 3.60593 4.03968 4.09039 4.18098 4.24024 4.35707 4.45343 4.59451 4.80734 4.97039 5.06111 5.10210 5.18320 5.25967 5.28263 5.29458 5.32184 5.42591 5.51452 5.53582 5.61135 5.63870 5.73565 5.84008 5.93806 5.98662 6.19516 6.42286 6.43723 6.71976 6.79771 7.07732 7.20793 7.34788 7.42735 7.53146 7.91266 8.22622 8.40301 8.89186 9.07965 9.55283 11.03027 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.002491 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.404226 B =11235.989031 C =11470.156644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.039 3.961 16 N -0.653 5.653 17 C 0.078 3.922 18 H 0.105 0.895 19 C 0.074 3.926 20 N -0.602 5.602 21 C 0.487 3.513 22 O -0.503 6.503 23 C 0.262 3.738 24 F -0.175 7.175 25 F -0.187 7.187 26 C 0.089 3.911 27 C -0.089 4.089 28 H 0.088 0.912 29 C -0.132 4.132 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.352 0.648 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 -4.119 22.249 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.406 6.406 15 C -0.093 4.093 16 N -0.284 5.284 17 C -0.034 4.034 18 H 0.123 0.877 19 C -0.050 4.050 20 N -0.337 5.337 21 C 0.271 3.729 22 O -0.377 6.377 23 C 0.205 3.795 24 F -0.156 7.156 25 F -0.169 7.169 26 C -0.033 4.033 27 C -0.108 4.108 28 H 0.107 0.893 29 C -0.190 4.190 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.173 0.827 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.156 0.844 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.626 -3.625 21.858 22.451 hybrid contribution -0.115 -0.204 -0.235 0.332 sum -3.742 -3.829 21.623 22.276 Atomic orbital electron populations 1.22225 0.96859 1.01402 1.02268 1.21404 0.93401 0.84304 1.02641 1.48254 1.63851 1.13229 1.07726 1.19241 0.96233 0.93557 0.78058 1.21390 0.96905 1.31963 1.06217 0.92522 1.24935 0.97837 0.94929 0.96397 1.69922 1.35723 1.33431 1.14362 0.86560 0.84827 0.78215 0.77819 1.20291 1.21213 1.20145 1.20126 0.78934 0.87118 0.84842 1.90674 1.44987 1.17968 1.86924 1.21984 1.00087 0.96708 0.90526 1.60095 1.62106 1.06966 0.99237 1.22903 0.91166 0.99503 0.89852 0.87699 1.23200 0.99826 0.83336 0.98603 1.48393 1.08667 1.17204 1.59440 1.20690 0.84794 0.85996 0.81436 1.90835 1.22229 1.75309 1.49361 1.21570 0.81742 0.93014 0.83206 1.93067 1.45599 1.81157 1.95794 1.93036 1.82914 1.96147 1.44782 1.22513 0.79751 1.00186 1.00822 1.22255 0.95924 0.95527 0.97112 0.89333 1.21595 0.93555 1.02548 1.01300 0.93277 0.91997 0.92163 0.89910 0.91861 0.95116 0.94002 0.92670 0.88410 0.92883 0.82717 0.90230 0.89944 0.84406 0.90209 0.90227 0.93329 0.92146 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -12.04 2.46 -175.07 -0.43 -12.47 16 4 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 5 C -0.53 -14.69 9.39 -34.44 -0.32 -15.02 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.50 9.81 7.71 -10.98 -0.08 9.73 16 14 O -0.53 -12.69 15.78 5.56 0.09 -12.60 16 15 C 0.04 0.51 4.58 -4.97 -0.02 0.49 16 16 N -0.65 -7.71 4.55 -105.61 -0.48 -8.19 16 17 C 0.08 0.63 3.13 -65.45 -0.21 0.42 16 18 H 0.11 0.70 7.83 -51.93 -0.41 0.30 16 19 C 0.07 0.64 6.35 -2.41 -0.02 0.63 16 20 N -0.60 -5.53 3.26 -170.38 -0.56 -6.09 16 21 C 0.49 5.48 7.68 -10.98 -0.08 5.39 16 22 O -0.50 -7.69 16.88 5.55 0.09 -7.59 16 23 C 0.26 2.30 5.16 36.01 0.19 2.48 16 24 F -0.18 -1.98 16.95 2.25 0.04 -1.94 16 25 F -0.19 -1.62 15.91 2.25 0.04 -1.59 16 26 C 0.09 0.63 5.75 -3.07 -0.02 0.61 16 27 C -0.09 -0.61 3.46 -88.79 -0.31 -0.91 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 C -0.13 -1.09 8.81 37.16 0.33 -0.76 16 30 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 1.13 7.35 -51.93 -0.38 0.75 16 39 H 0.05 0.60 7.19 -51.93 -0.37 0.23 16 40 H 0.35 4.70 8.10 -39.29 -0.32 4.38 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 43 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.54 7.82 -51.93 -0.41 0.13 16 45 H 0.08 0.48 7.27 -51.93 -0.38 0.10 16 46 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.88 7.21 -51.93 -0.37 0.51 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -35.19 399.87 -7.28 -42.47 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.49 Total: 0.25 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -0.31 Total: 10.82 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.73 Total: -52.48 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.18 Total: -20.20 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.07 Total: -3.53 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.19 -7.28 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001393728995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.375 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds