Wall clock time and date at job start Wed Apr 1 2020 04:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47150 * 2 1 4 4 C 1.46494 * 120.00612 * 270.00388 * 3 2 1 5 5 C 1.50694 * 109.47348 * 270.00033 * 4 3 2 6 6 H 1.08002 * 119.99724 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00202 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99952 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00141 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47354 * 59.99716 * 9 7 5 11 11 H 1.48502 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47054 * 299.99861 * 9 7 5 13 13 C 1.34781 * 119.99621 * 90.00326 * 3 2 1 14 14 O 1.21280 * 120.00176 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99973 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47252 * 180.02562 * 15 13 3 17 17 C 1.46894 * 111.00194 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.88892 * 31.11186 * 17 16 15 19 19 C 1.55132 * 111.19112 * 267.18210 * 17 16 15 20 20 N 1.47423 * 104.72496 * 279.19401 * 19 17 16 21 21 C 1.34777 * 125.65041 * 155.81864 * 20 19 17 22 22 O 1.21283 * 119.99750 * 359.71033 * 21 20 19 23 23 C 1.50702 * 119.99928 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47065 * 184.72501 * 23 21 20 25 25 F 1.39903 * 109.46873 * 304.71844 * 23 21 20 26 26 C 1.47023 * 108.69861 * 335.54967 * 20 19 17 27 27 C 1.54316 * 107.27276 * 1.28833 * 26 20 19 28 28 H 1.09000 * 110.72444 * 263.65268 * 27 26 20 29 29 C 1.52998 * 110.72099 * 140.55759 * 27 26 20 30 30 H 1.09001 * 109.46893 * 299.99266 * 1 2 3 31 31 H 1.08995 * 109.47259 * 59.99392 * 1 2 3 32 32 H 1.09004 * 109.46960 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46893 * 240.00733 * 2 1 3 34 34 H 1.08999 * 109.47695 * 120.00408 * 2 1 3 35 35 H 1.09001 * 109.46840 * 30.00213 * 4 3 2 36 36 H 1.09005 * 109.47037 * 149.99921 * 4 3 2 37 37 H 0.97001 * 119.99913 * 179.97438 * 8 7 5 38 38 H 1.08994 * 109.47436 * 59.99647 * 15 13 3 39 39 H 1.08998 * 109.46941 * 299.99667 * 15 13 3 40 40 H 1.00897 * 111.00180 * 56.03883 * 16 15 13 41 41 H 1.09004 * 110.50026 * 160.34802 * 19 17 16 42 42 H 1.09006 * 110.34295 * 37.95643 * 19 17 16 43 43 H 1.08998 * 109.47021 * 64.71733 * 23 21 20 44 44 H 1.08997 * 109.88157 * 120.70996 * 26 20 19 45 45 H 1.09005 * 109.88313 * 241.71766 * 26 20 19 46 46 H 1.08997 * 109.47687 * 61.45160 * 29 27 26 47 47 H 1.09006 * 109.47538 * 181.45301 * 29 27 26 48 48 H 1.08998 * 109.47206 * 301.45319 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1489 2.3900 -2.8779 8 7 3.3486 3.1253 -3.6184 9 14 5.9129 2.0959 -3.4177 10 1 6.1401 0.6392 -3.5950 11 1 6.1600 2.7952 -4.7042 12 1 6.8408 2.6192 -2.3831 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1597 1.1674 15 6 1.9924 1.3058 2.4723 16 7 2.3100 2.2059 3.5890 17 6 2.0777 1.5452 4.8802 18 1 2.2577 0.4728 4.8060 19 6 0.6472 1.8320 5.4076 20 7 0.7350 3.1699 6.0204 21 6 -0.2939 4.0227 6.1957 22 8 -1.4079 3.7120 5.8304 23 6 -0.0590 5.3645 6.8401 24 9 -1.2827 6.0209 7.0100 25 9 0.5498 5.1830 8.0866 26 6 2.1296 3.4172 6.4146 27 6 2.9507 2.1799 5.9948 28 1 3.0697 1.4934 6.8331 29 6 4.3148 2.5976 5.4420 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0282 36 1 2.0955 3.1412 -1.1381 37 1 3.6746 3.5159 -4.4443 38 1 2.6229 0.4185 2.5298 39 1 0.9446 1.0113 2.5303 40 1 1.7844 3.0646 3.5220 41 1 0.3597 1.0911 6.1536 42 1 -0.0663 1.8383 4.5835 43 1 0.5901 5.9650 6.2028 44 1 2.5074 4.3033 5.9046 45 1 2.1906 3.5567 7.4940 46 1 4.8764 3.1200 6.2165 47 1 4.8666 1.7114 5.1283 48 1 4.1734 3.2589 4.5872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001393728995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:31 Heat of formation + Delta-G solvation = -183.791653 kcal Electronic energy + Delta-G solvation = -31771.922424 eV Core-core repulsion = 27110.876310 eV Total energy + Delta-G solvation = -4661.046114 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.27191 -48.30721 -41.45969 -40.62650 -39.23391 -36.95270 -35.71379 -34.86212 -33.54360 -31.63683 -30.98935 -29.60181 -28.50830 -27.23825 -26.76686 -24.68277 -23.95725 -23.56862 -21.23676 -20.97767 -19.95552 -19.29173 -18.84200 -18.63183 -18.40182 -17.78483 -17.73480 -17.19738 -16.85333 -16.54946 -16.16522 -15.89563 -15.56797 -15.11782 -15.08000 -14.82699 -14.65721 -14.64935 -14.42683 -14.33796 -14.21100 -14.12218 -13.69657 -13.64760 -13.36784 -13.31874 -13.19748 -13.13820 -13.02876 -12.78034 -12.63935 -12.49768 -12.17472 -12.13051 -11.87939 -11.73029 -11.71567 -11.59750 -11.17630 -10.63421 -10.52628 -10.04059 -9.44054 -9.29748 -8.21153 -6.36234 0.92163 1.33580 1.37364 1.41744 1.49024 1.88944 2.26350 2.42859 2.62364 2.89640 3.08095 3.13773 3.41678 3.43020 3.57780 3.66351 3.77442 4.00263 4.11337 4.23187 4.26983 4.36962 4.44568 4.48791 4.55962 4.62252 4.66247 4.71669 4.78646 4.91396 4.94522 4.98597 4.99437 5.05519 5.22170 5.23911 5.32023 5.37721 5.59053 5.73847 5.85084 5.96943 6.04961 6.07882 6.23132 6.54554 6.72217 6.85630 7.30305 7.54492 8.85642 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.002491 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.404226 B =11235.989031 C =11470.156644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.276 1.276 13 C 0.492 3.508 14 O -0.586 6.586 15 C 0.057 3.943 16 N -0.665 5.665 17 C 0.082 3.918 18 H 0.131 0.869 19 C 0.073 3.927 20 N -0.597 5.597 21 C 0.479 3.521 22 O -0.555 6.555 23 C 0.265 3.735 24 F -0.192 7.192 25 F -0.184 7.184 26 C 0.086 3.914 27 C -0.079 4.079 28 H 0.117 0.883 29 C -0.128 4.128 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.017 0.983 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.340 0.660 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.177 0.823 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -6.495 24.441 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.202 1.202 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.075 4.075 16 N -0.295 5.295 17 C -0.029 4.029 18 H 0.149 0.851 19 C -0.051 4.051 20 N -0.330 5.330 21 C 0.264 3.736 22 O -0.434 6.434 23 C 0.208 3.792 24 F -0.173 7.173 25 F -0.166 7.166 26 C -0.036 4.036 27 C -0.099 4.099 28 H 0.135 0.865 29 C -0.185 4.185 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.035 0.965 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.159 0.841 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.194 0.806 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.196 -6.066 24.086 24.935 hybrid contribution -0.548 0.531 -0.895 1.176 sum -2.744 -5.535 23.191 24.000 Atomic orbital electron populations 1.22156 0.95014 1.03409 1.01347 1.21732 0.94883 0.81423 1.04096 1.48283 1.64084 1.15134 1.06239 1.18632 0.95200 0.91319 0.80562 1.21688 0.97843 1.31932 1.06431 0.92673 1.25887 1.02446 0.94501 0.96476 1.70056 1.37872 1.34333 1.14819 0.85461 0.78992 0.79027 0.77293 1.18390 1.20572 1.20159 1.21330 0.77304 0.86722 0.86548 1.90639 1.47424 1.20677 1.87915 1.21884 1.02048 0.96482 0.87041 1.60121 1.62273 1.06665 1.00456 1.23038 0.91016 1.00685 0.88190 0.85118 1.23277 0.99702 0.83503 0.98586 1.48513 1.09140 1.17112 1.58240 1.21143 0.84446 0.86863 0.81153 1.90804 1.24178 1.76509 1.51869 1.21797 0.81598 0.92148 0.83621 1.93030 1.47009 1.81364 1.95912 1.93037 1.82671 1.96117 1.44726 1.22697 0.78381 1.00584 1.01902 1.22275 0.94608 0.95695 0.97280 0.86484 1.21509 0.94569 1.01844 1.00607 0.92470 0.94686 0.88590 0.91127 0.87660 0.96481 0.98925 0.92485 0.85699 0.90412 0.84085 0.88316 0.91854 0.80646 0.90079 0.88473 0.91884 0.92493 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.11 16 2 C 0.10 2.88 5.93 86.38 0.51 3.40 16 3 N -0.61 -24.77 2.46 -826.17 -2.03 -26.80 16 4 C 0.26 14.27 5.16 85.63 0.44 14.72 16 5 C -0.54 -31.03 9.39 25.60 0.24 -30.79 16 6 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.32 5.46 84.66 0.46 0.79 16 8 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 9 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.49 19.34 7.71 87.66 0.68 20.01 16 14 O -0.59 -29.43 15.78 -3.03 -0.05 -29.47 16 15 C 0.06 1.36 4.58 85.56 0.39 1.76 16 16 N -0.66 -14.68 4.55 -488.03 -2.22 -16.90 16 17 C 0.08 1.06 3.13 46.39 0.15 1.21 16 18 H 0.13 1.10 7.83 -2.39 -0.02 1.09 16 19 C 0.07 1.09 6.35 86.93 0.55 1.64 16 20 N -0.60 -9.97 3.26 -811.34 -2.65 -12.62 16 21 C 0.48 10.51 7.68 87.66 0.67 11.18 16 22 O -0.56 -17.30 16.88 -3.04 -0.05 -17.35 16 23 C 0.26 4.37 5.16 71.24 0.37 4.73 16 24 F -0.19 -4.32 16.95 44.97 0.76 -3.56 16 25 F -0.18 -2.85 15.91 44.97 0.72 -2.14 16 26 C 0.09 0.97 5.75 86.73 0.50 1.47 16 27 C -0.08 -0.82 3.46 -9.61 -0.03 -0.85 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 C -0.13 -1.80 8.81 71.98 0.63 -1.17 16 30 H 0.06 1.27 7.22 -2.39 -0.02 1.26 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 34 H 0.11 2.13 6.44 -2.39 -0.02 2.12 16 35 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 36 H -0.01 -0.46 7.42 -2.38 -0.02 -0.48 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.13 2.35 7.35 -2.39 -0.02 2.33 16 39 H 0.08 1.51 7.19 -2.39 -0.02 1.50 16 40 H 0.34 9.02 8.10 -89.70 -0.73 8.29 16 41 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.23 8.03 -2.38 -0.02 1.21 16 43 H 0.18 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 0.94 7.82 -2.39 -0.02 0.92 16 45 H 0.10 0.83 7.27 -2.38 -0.02 0.81 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.05 1.04 7.21 -2.39 -0.02 1.03 16 Total: -1.00 -83.11 399.87 3.34 -79.77 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.25 Total: 13.81 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 6.30 Total: 24.98 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -6.61 Total: -112.80 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.10 Total: -46.82 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 1.48 Total: -5.69 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -83.11 3.34 -79.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001393728995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.023 kcal (2) G-P(sol) polarization free energy of solvation -83.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds