Wall clock time and date at job start Wed Apr 1 2020 04:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46497 * 109.47517 * 2 1 4 4 C 1.46508 * 119.99607 * 270.00113 * 3 2 1 5 5 C 1.50699 * 109.46806 * 269.99571 * 4 3 2 6 6 H 1.07998 * 120.00212 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99711 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00311 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47124 * 89.99803 * 9 7 5 11 11 H 1.48495 * 109.46909 * 209.99631 * 9 7 5 12 12 H 1.48501 * 109.47082 * 329.99997 * 9 7 5 13 13 C 1.34775 * 120.00388 * 89.99616 * 3 2 1 14 14 O 1.21280 * 120.00014 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99887 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47257 * 179.97438 * 15 13 3 17 17 C 1.46891 * 111.00056 * 179.97438 * 16 15 13 18 18 H 1.09007 * 110.64520 * 36.68917 * 17 16 15 19 19 C 1.55160 * 110.72138 * 273.54287 * 17 16 15 20 20 C 1.54908 * 101.58344 * 206.13473 * 19 17 16 21 21 N 1.47425 * 104.92961 * 36.95575 * 20 19 17 22 22 C 1.34771 * 125.65052 * 155.89235 * 21 20 19 23 23 O 1.21279 * 120.00012 * 180.02562 * 22 21 20 24 24 C 1.50704 * 119.99929 * 0.02562 * 22 21 20 25 25 F 1.39894 * 109.46664 * 55.00460 * 24 22 21 26 26 F 1.39904 * 109.46695 * 175.00255 * 24 22 21 27 27 C 1.47192 * 108.61291 * 336.00613 * 21 20 19 28 28 H 1.09000 * 109.92252 * 241.45484 * 27 21 20 29 29 C 1.52998 * 109.94391 * 120.37940 * 27 21 20 30 30 H 1.09006 * 109.47531 * 300.00136 * 1 2 3 31 31 H 1.08999 * 109.47282 * 60.00563 * 1 2 3 32 32 H 1.09004 * 109.47505 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47406 * 239.99324 * 2 1 3 34 34 H 1.09006 * 109.47013 * 119.99712 * 2 1 3 35 35 H 1.08992 * 109.47212 * 29.99877 * 4 3 2 36 36 H 1.08994 * 109.46555 * 150.00079 * 4 3 2 37 37 H 0.96998 * 120.00383 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47051 * 59.99836 * 15 13 3 39 39 H 1.09003 * 109.47132 * 299.99770 * 15 13 3 40 40 H 1.00906 * 110.99904 * 303.95652 * 16 15 13 41 41 H 1.08995 * 110.99972 * 88.06105 * 19 17 16 42 42 H 1.09001 * 111.00142 * 324.20962 * 19 17 16 43 43 H 1.09002 * 110.36632 * 155.84970 * 20 19 17 44 44 H 1.08995 * 110.36781 * 278.06207 * 20 19 17 45 45 H 1.09000 * 109.47087 * 295.00234 * 24 22 21 46 46 H 1.09001 * 109.47137 * 302.12164 * 29 27 21 47 47 H 1.08998 * 109.47444 * 62.12185 * 29 27 21 48 48 H 1.08997 * 109.47272 * 182.12467 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1494 2.3902 -2.8775 8 7 3.3494 3.1263 -3.6177 9 14 5.9134 2.0960 -3.4171 10 1 5.9761 0.8754 -4.2606 11 1 6.3929 3.2635 -4.1995 12 1 6.7736 1.9152 -2.2201 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3109 2.2059 3.5888 17 6 2.0773 1.5458 4.8801 18 1 2.3507 0.4919 4.8280 19 6 0.5983 1.7082 5.3201 20 6 0.7183 1.5988 6.8606 21 7 1.9819 2.2819 7.1926 22 6 2.2861 2.8359 8.3829 23 8 3.3606 3.3748 8.5441 24 6 1.2912 2.7857 9.5138 25 9 0.9194 1.4578 9.7490 26 9 1.8716 3.3193 10.6695 27 6 2.8534 2.2599 6.0067 28 1 3.7700 1.7137 6.2294 29 6 3.1909 3.6901 5.5805 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5817 1.6876 -2.0284 36 1 2.0956 3.1409 -1.1385 37 1 3.6755 3.5167 -4.4437 38 1 2.6227 0.4188 2.5299 39 1 0.9443 1.0116 2.5302 40 1 3.2592 2.5440 3.5214 41 1 -0.0192 0.9048 4.9183 42 1 0.2082 2.6828 5.0267 43 1 -0.1215 2.0991 7.3430 44 1 0.7612 0.5530 7.1645 45 1 0.4092 3.3684 9.2478 46 1 2.2694 4.2355 5.3768 47 1 3.7385 4.1881 6.3805 48 1 3.8050 3.6656 4.6803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001394664097.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:57 Heat of formation + Delta-G solvation = -151.959228 kcal Electronic energy + Delta-G solvation = -31342.447537 eV Core-core repulsion = 26682.781780 eV Total energy + Delta-G solvation = -4659.665756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.60899 -47.63242 -40.73873 -39.21186 -38.21945 -35.49865 -34.92248 -32.84260 -31.75089 -31.30142 -30.12955 -28.46672 -27.56479 -26.17398 -24.98902 -23.49535 -23.06230 -22.34805 -20.87443 -19.85518 -18.57615 -18.48756 -18.23768 -17.66164 -16.65209 -16.47995 -16.42384 -16.34423 -15.81562 -15.51945 -15.02046 -14.61655 -14.46351 -14.39967 -13.98407 -13.94114 -13.88083 -13.62214 -13.47336 -13.39965 -13.09399 -12.91438 -12.61933 -12.50778 -12.38866 -12.10327 -12.05396 -11.90713 -11.78231 -11.51806 -11.24047 -11.18925 -10.96033 -10.93432 -10.78129 -10.55728 -10.28639 -10.15620 -9.66219 -9.25088 -8.98020 -8.50064 -8.46006 -7.69060 -6.06775 -4.11695 1.72417 1.99154 3.21591 3.27575 3.34317 3.36551 3.41581 3.45665 3.61173 4.03216 4.11034 4.14606 4.16074 4.24096 4.42938 4.69510 4.75603 4.93147 5.00343 5.02209 5.18614 5.19338 5.27474 5.29797 5.30583 5.39883 5.44947 5.55213 5.60322 5.74229 5.78700 5.85024 5.93646 5.97247 6.18575 6.24874 6.43026 6.73182 6.80094 7.07481 7.23311 7.34103 7.43121 7.52304 7.89663 8.20926 8.39938 8.87729 9.07695 9.53603 11.01215 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002123 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.900680 B =13187.750973 C =14133.786904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.528 6.528 15 C 0.040 3.960 16 N -0.659 5.659 17 C 0.078 3.922 18 H 0.063 0.937 19 C -0.122 4.122 20 C 0.092 3.908 21 N -0.598 5.598 22 C 0.487 3.513 23 O -0.499 6.499 24 C 0.262 3.738 25 F -0.187 7.187 26 F -0.175 7.175 27 C 0.136 3.864 28 H 0.080 0.920 29 C -0.157 4.157 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.357 0.643 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.136 0.864 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 -7.446 22.449 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.404 6.404 15 C -0.093 4.093 16 N -0.294 5.294 17 C -0.033 4.033 18 H 0.081 0.919 19 C -0.161 4.161 20 C -0.031 4.031 21 N -0.333 5.333 22 C 0.271 3.729 23 O -0.373 6.373 24 C 0.204 3.796 25 F -0.169 7.169 26 F -0.156 7.156 27 C 0.033 3.967 28 H 0.098 0.902 29 C -0.215 4.215 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.181 0.819 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.153 0.847 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.905 -6.093 22.426 25.262 hybrid contribution 1.578 -1.026 -0.319 1.909 sum -8.327 -7.119 22.107 24.673 Atomic orbital electron populations 1.22221 0.96775 1.01345 1.02388 1.21405 0.93524 0.84306 1.02556 1.48255 1.63963 1.13180 1.07724 1.19254 0.96182 0.93669 0.78067 1.21415 0.96929 1.31886 1.06254 0.92595 1.24937 0.97826 0.94916 0.96441 1.69929 1.35690 1.33376 1.14312 0.86509 0.84698 0.77684 0.78586 1.20672 1.21071 1.19946 1.20124 0.79003 0.87084 0.84831 1.90685 1.45134 1.17689 1.86906 1.21971 1.02418 0.94337 0.90548 1.60397 1.33207 1.36862 0.98980 1.22549 0.95572 0.96233 0.88976 0.91868 1.22897 0.96401 1.04483 0.92303 1.22582 0.85458 0.97954 0.97094 1.48497 1.18834 1.55167 1.10784 1.20636 0.88552 0.80474 0.83258 1.90826 1.22693 1.42476 1.81279 1.21568 0.95694 0.79454 0.82841 1.93051 1.92192 1.36520 1.95108 1.93070 1.86495 1.85693 1.50386 1.21754 0.92822 0.98652 0.83452 0.90162 1.22027 1.03067 0.94568 1.01887 0.93052 0.91995 0.92238 0.89981 0.91965 0.95073 0.93875 0.92702 0.92781 0.88654 0.81935 0.89516 0.88886 0.90191 0.90156 0.84672 0.91269 0.91558 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.15 0.38 -1.66 16 2 C 0.11 1.56 5.93 -4.05 -0.02 1.54 16 3 N -0.60 -11.88 2.46 -175.06 -0.43 -12.31 16 4 C 0.25 6.27 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.50 9.71 7.71 -10.98 -0.08 9.62 16 14 O -0.53 -12.64 15.78 5.56 0.09 -12.55 16 15 C 0.04 0.51 4.58 -4.98 -0.02 0.49 16 16 N -0.66 -7.93 5.21 -106.06 -0.55 -8.49 16 17 C 0.08 0.67 3.11 -65.88 -0.21 0.47 16 18 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 19 C -0.12 -0.81 6.71 -24.58 -0.16 -0.98 16 20 C 0.09 0.51 6.00 -2.53 -0.02 0.50 16 21 N -0.60 -5.12 3.09 -162.89 -0.50 -5.62 16 22 C 0.49 4.93 7.47 -10.99 -0.08 4.85 16 23 O -0.50 -7.05 15.55 5.56 0.09 -6.96 16 24 C 0.26 1.89 4.90 36.01 0.18 2.07 16 25 F -0.19 -1.40 16.46 2.25 0.04 -1.37 16 26 F -0.18 -1.74 16.95 2.25 0.04 -1.70 16 27 C 0.14 1.30 3.41 -66.86 -0.23 1.07 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 C -0.16 -1.76 8.41 37.16 0.31 -1.44 16 30 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.05 0.62 7.35 -51.93 -0.38 0.24 16 39 H 0.10 1.03 7.18 -51.93 -0.37 0.66 16 40 H 0.36 4.77 6.14 -39.29 -0.24 4.53 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.28 7.62 -51.93 -0.40 -0.11 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.14 0.42 8.05 -51.93 -0.42 0.00 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.82 6.78 -51.93 -0.35 0.47 16 48 H 0.08 0.89 6.23 -51.93 -0.32 0.57 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -35.09 395.72 -7.29 -42.38 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.33 Total: 0.13 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -0.40 Total: 9.48 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.75 Total: -51.96 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.17 Total: -19.51 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.09 -7.29 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001394664097.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.576 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds