Wall clock time and date at job start Wed Apr 1 2020 04:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46497 * 109.47517 * 2 1 4 4 C 1.46508 * 119.99607 * 270.00113 * 3 2 1 5 5 C 1.50699 * 109.46806 * 269.99571 * 4 3 2 6 6 H 1.07998 * 120.00212 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99711 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00311 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47124 * 89.99803 * 9 7 5 11 11 H 1.48495 * 109.46909 * 209.99631 * 9 7 5 12 12 H 1.48501 * 109.47082 * 329.99997 * 9 7 5 13 13 C 1.34775 * 120.00388 * 89.99616 * 3 2 1 14 14 O 1.21280 * 120.00014 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99887 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47257 * 179.97438 * 15 13 3 17 17 C 1.46891 * 111.00056 * 179.97438 * 16 15 13 18 18 H 1.09007 * 110.64520 * 36.68917 * 17 16 15 19 19 C 1.55160 * 110.72138 * 273.54287 * 17 16 15 20 20 C 1.54908 * 101.58344 * 206.13473 * 19 17 16 21 21 N 1.47425 * 104.92961 * 36.95575 * 20 19 17 22 22 C 1.34771 * 125.65052 * 155.89235 * 21 20 19 23 23 O 1.21279 * 120.00012 * 180.02562 * 22 21 20 24 24 C 1.50704 * 119.99929 * 0.02562 * 22 21 20 25 25 F 1.39894 * 109.46664 * 55.00460 * 24 22 21 26 26 F 1.39904 * 109.46695 * 175.00255 * 24 22 21 27 27 C 1.47192 * 108.61291 * 336.00613 * 21 20 19 28 28 H 1.09000 * 109.92252 * 241.45484 * 27 21 20 29 29 C 1.52998 * 109.94391 * 120.37940 * 27 21 20 30 30 H 1.09006 * 109.47531 * 300.00136 * 1 2 3 31 31 H 1.08999 * 109.47282 * 60.00563 * 1 2 3 32 32 H 1.09004 * 109.47505 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47406 * 239.99324 * 2 1 3 34 34 H 1.09006 * 109.47013 * 119.99712 * 2 1 3 35 35 H 1.08992 * 109.47212 * 29.99877 * 4 3 2 36 36 H 1.08994 * 109.46555 * 150.00079 * 4 3 2 37 37 H 0.96998 * 120.00383 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47051 * 59.99836 * 15 13 3 39 39 H 1.09003 * 109.47132 * 299.99770 * 15 13 3 40 40 H 1.00906 * 110.99904 * 303.95652 * 16 15 13 41 41 H 1.08995 * 110.99972 * 88.06105 * 19 17 16 42 42 H 1.09001 * 111.00142 * 324.20962 * 19 17 16 43 43 H 1.09002 * 110.36632 * 155.84970 * 20 19 17 44 44 H 1.08995 * 110.36781 * 278.06207 * 20 19 17 45 45 H 1.09000 * 109.47087 * 295.00234 * 24 22 21 46 46 H 1.09001 * 109.47137 * 302.12164 * 29 27 21 47 47 H 1.08998 * 109.47444 * 62.12185 * 29 27 21 48 48 H 1.08997 * 109.47272 * 182.12467 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1494 2.3902 -2.8775 8 7 3.3494 3.1263 -3.6177 9 14 5.9134 2.0960 -3.4171 10 1 5.9761 0.8754 -4.2606 11 1 6.3929 3.2635 -4.1995 12 1 6.7736 1.9152 -2.2201 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3109 2.2059 3.5888 17 6 2.0773 1.5458 4.8801 18 1 2.3507 0.4919 4.8280 19 6 0.5983 1.7082 5.3201 20 6 0.7183 1.5988 6.8606 21 7 1.9819 2.2819 7.1926 22 6 2.2861 2.8359 8.3829 23 8 3.3606 3.3748 8.5441 24 6 1.2912 2.7857 9.5138 25 9 0.9194 1.4578 9.7490 26 9 1.8716 3.3193 10.6695 27 6 2.8534 2.2599 6.0067 28 1 3.7700 1.7137 6.2294 29 6 3.1909 3.6901 5.5805 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5817 1.6876 -2.0284 36 1 2.0956 3.1409 -1.1385 37 1 3.6755 3.5167 -4.4437 38 1 2.6227 0.4188 2.5299 39 1 0.9443 1.0116 2.5302 40 1 3.2592 2.5440 3.5214 41 1 -0.0192 0.9048 4.9183 42 1 0.2082 2.6828 5.0267 43 1 -0.1215 2.0991 7.3430 44 1 0.7612 0.5530 7.1645 45 1 0.4092 3.3684 9.2478 46 1 2.2694 4.2355 5.3768 47 1 3.7385 4.1881 6.3805 48 1 3.8050 3.6656 4.6803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001394664097.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:51 Heat of formation + Delta-G solvation = -177.105924 kcal Electronic energy + Delta-G solvation = -31343.537979 eV Core-core repulsion = 26682.781780 eV Total energy + Delta-G solvation = -4660.756199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.20850 -48.24624 -41.48217 -40.63240 -39.09338 -36.94575 -35.95394 -34.87308 -32.60517 -32.03925 -31.52269 -29.63327 -28.70062 -27.33928 -26.03346 -24.60859 -24.11752 -23.79012 -21.53305 -20.60780 -19.91624 -19.18219 -18.82323 -18.61371 -18.32641 -17.84277 -17.43008 -17.15081 -16.89997 -16.79330 -16.32962 -15.77458 -15.53589 -15.15730 -14.99560 -14.85066 -14.62429 -14.57067 -14.47088 -14.35169 -14.26933 -14.04013 -13.61239 -13.54890 -13.41575 -13.24914 -13.16160 -13.06372 -12.98309 -12.75728 -12.65132 -12.46313 -12.41349 -12.13298 -11.93382 -11.78702 -11.70237 -11.67394 -11.05609 -10.63888 -10.51572 -9.94861 -9.42056 -9.36420 -8.21769 -6.36531 0.99320 1.32749 1.35627 1.38709 1.48572 1.92148 2.27439 2.42635 2.66851 2.95044 3.07491 3.18177 3.37650 3.53766 3.58833 3.69964 3.79799 3.98302 4.14752 4.20685 4.26876 4.37693 4.41682 4.45203 4.52977 4.54892 4.62712 4.69125 4.73058 4.95928 4.97566 5.03067 5.04607 5.09849 5.15975 5.24441 5.26049 5.34368 5.44949 5.59796 5.86726 5.97738 6.08231 6.12912 6.25280 6.62399 6.72427 6.88527 7.30213 7.57418 8.84936 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002123 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.900680 B =13187.750973 C =14133.786904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.059 3.941 16 N -0.675 5.675 17 C 0.082 3.918 18 H 0.086 0.914 19 C -0.117 4.117 20 C 0.089 3.911 21 N -0.594 5.594 22 C 0.478 3.522 23 O -0.553 6.553 24 C 0.268 3.732 25 F -0.186 7.186 26 F -0.193 7.193 27 C 0.135 3.865 28 H 0.073 0.927 29 C -0.148 4.148 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.020 0.980 36 H -0.006 1.006 37 H 0.266 0.734 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.345 0.655 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.187 0.813 46 H 0.061 0.939 47 H 0.046 0.954 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 -10.461 23.991 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.073 4.073 16 N -0.310 5.310 17 C -0.028 4.028 18 H 0.104 0.896 19 C -0.155 4.155 20 C -0.032 4.032 21 N -0.327 5.327 22 C 0.263 3.737 23 O -0.430 6.430 24 C 0.211 3.789 25 F -0.167 7.167 26 F -0.175 7.175 27 C 0.031 3.969 28 H 0.091 0.909 29 C -0.206 4.206 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.038 0.962 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.167 0.833 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.204 0.796 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.434 -9.190 23.983 28.114 hybrid contribution 2.000 -0.087 -0.812 2.160 sum -9.434 -9.277 23.171 26.682 Atomic orbital electron populations 1.22153 0.94499 1.03463 1.01751 1.21752 0.95369 0.81276 1.03882 1.48280 1.64162 1.15119 1.06156 1.18644 0.95070 0.91454 0.80666 1.21707 0.97940 1.31739 1.06377 0.92867 1.25861 1.02282 0.94575 0.96590 1.70053 1.37754 1.34297 1.14796 0.85437 0.79154 0.78130 0.78206 1.18807 1.20858 1.19772 1.21334 0.77325 0.86661 0.86575 1.90653 1.47665 1.20593 1.87925 1.21876 1.04743 0.93937 0.86742 1.60411 1.32634 1.37687 1.00248 1.22631 0.96937 0.96655 0.86579 0.89624 1.22916 0.94898 1.04730 0.92974 1.22875 0.84685 0.99051 0.96564 1.48589 1.19721 1.54403 1.09977 1.21280 0.88477 0.79667 0.84238 1.90803 1.25025 1.44866 1.82348 1.21845 0.96084 0.80009 0.80923 1.93054 1.91984 1.36668 1.94977 1.93034 1.87036 1.86000 1.51388 1.21680 0.93368 0.97253 0.84583 0.90854 1.21883 1.02145 0.95908 1.00668 0.91631 0.94736 0.88637 0.91416 0.87853 0.96246 0.98809 0.92487 0.90120 0.85434 0.83265 0.86837 0.90378 0.87407 0.88272 0.79630 0.92003 0.93468 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.10 2.70 5.93 86.38 0.51 3.21 16 3 N -0.61 -24.11 2.46 -826.16 -2.03 -26.14 16 4 C 0.26 14.00 5.16 85.63 0.44 14.44 16 5 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 9 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 13 C 0.49 18.93 7.71 87.66 0.68 19.61 16 14 O -0.59 -29.42 15.78 -3.03 -0.05 -29.47 16 15 C 0.06 1.34 4.58 85.56 0.39 1.73 16 16 N -0.67 -15.24 5.21 -489.45 -2.55 -17.79 16 17 C 0.08 1.18 3.11 46.11 0.14 1.32 16 18 H 0.09 0.92 7.90 -2.38 -0.02 0.90 16 19 C -0.12 -1.08 6.71 31.99 0.21 -0.86 16 20 C 0.09 0.62 6.00 86.85 0.52 1.14 16 21 N -0.59 -8.97 3.09 -787.67 -2.43 -11.40 16 22 C 0.48 9.16 7.47 87.66 0.65 9.81 16 23 O -0.55 -16.04 15.55 -3.03 -0.05 -16.09 16 24 C 0.27 3.22 4.90 71.24 0.35 3.57 16 25 F -0.19 -2.19 16.46 44.97 0.74 -1.45 16 26 F -0.19 -3.63 16.95 44.97 0.76 -2.86 16 27 C 0.13 2.44 3.41 45.31 0.15 2.60 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 C -0.15 -3.45 8.41 71.98 0.61 -2.84 16 30 H 0.06 1.22 7.22 -2.38 -0.02 1.20 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.07 2.04 8.07 -2.38 -0.02 2.02 16 34 H 0.10 1.97 6.44 -2.38 -0.02 1.95 16 35 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 36 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.08 1.47 7.35 -2.39 -0.02 1.45 16 39 H 0.13 2.13 7.18 -2.39 -0.02 2.11 16 40 H 0.35 9.29 6.14 -89.69 -0.55 8.74 16 41 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 0.21 7.62 -2.39 -0.02 0.19 16 44 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.19 0.38 8.05 -2.39 -0.02 0.36 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.05 1.26 6.78 -2.39 -0.02 1.25 16 48 H 0.07 1.65 6.23 -2.39 -0.01 1.63 16 Total: -1.00 -84.18 395.72 3.24 -80.94 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.43 Total: 12.11 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 6.10 Total: 21.35 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -6.73 Total: -111.35 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.09 Total: -45.56 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 1.50 Total: -4.32 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -84.18 3.24 -80.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001394664097.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.165 kcal (2) G-P(sol) polarization free energy of solvation -84.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds