Wall clock time and date at job start Wed Apr 1 2020 04:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47041 * 2 1 4 4 C 1.46500 * 119.99726 * 270.00018 * 3 2 1 5 5 C 1.50700 * 109.47226 * 269.99496 * 4 3 2 6 6 H 1.08000 * 119.99702 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00434 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99587 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47093 * 59.99966 * 9 7 5 11 11 H 1.48502 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47078 * 299.99860 * 9 7 5 13 13 C 1.34770 * 120.00186 * 89.99546 * 3 2 1 14 14 O 1.21284 * 120.00024 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00033 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47333 * 179.97438 * 15 13 3 17 17 C 1.46902 * 110.99997 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.64307 * 31.86312 * 17 16 15 19 19 C 1.55156 * 110.87431 * 268.60908 * 17 16 15 20 20 C 1.54908 * 101.58197 * 206.06428 * 19 17 16 21 21 N 1.47422 * 104.83357 * 37.01425 * 20 19 17 22 22 C 1.34774 * 125.65171 * 155.91447 * 21 20 19 23 23 O 1.21281 * 120.00298 * 179.97438 * 22 21 20 24 24 C 1.50705 * 119.99741 * 359.94939 * 22 21 20 25 25 F 1.39902 * 109.47009 * 185.00242 * 24 22 21 26 26 F 1.39905 * 109.46711 * 304.99447 * 24 22 21 27 27 C 1.47031 * 108.70136 * 335.86884 * 21 20 19 28 28 H 1.08994 * 109.87878 * 120.47623 * 27 21 20 29 29 C 1.53003 * 109.88127 * 241.64370 * 27 21 20 30 30 H 1.08987 * 109.47516 * 300.00357 * 1 2 3 31 31 H 1.09003 * 109.47107 * 60.00428 * 1 2 3 32 32 H 1.09002 * 109.46775 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47387 * 239.99863 * 2 1 3 34 34 H 1.09003 * 109.47107 * 119.99572 * 2 1 3 35 35 H 1.09004 * 109.47653 * 29.99786 * 4 3 2 36 36 H 1.09006 * 109.47174 * 149.99616 * 4 3 2 37 37 H 0.97001 * 119.99873 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.46995 * 60.00120 * 15 13 3 39 39 H 1.08999 * 109.47358 * 299.99887 * 15 13 3 40 40 H 1.00903 * 110.99760 * 56.04762 * 16 15 13 41 41 H 1.08999 * 111.00338 * 324.14368 * 19 17 16 42 42 H 1.09000 * 110.99867 * 87.95017 * 19 17 16 43 43 H 1.09000 * 110.36459 * 155.84880 * 20 19 17 44 44 H 1.08998 * 110.36772 * 278.17049 * 20 19 17 45 45 H 1.08996 * 109.47367 * 64.99385 * 24 22 21 46 46 H 1.09000 * 109.46935 * 177.81158 * 29 27 21 47 47 H 1.09003 * 109.46781 * 297.81066 * 29 27 21 48 48 H 1.08995 * 109.47287 * 57.80746 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0961 7 6 4.1494 2.3905 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9134 2.0965 -3.4169 10 1 6.1403 0.6398 -3.5952 11 1 6.1610 2.7966 -4.7030 12 1 6.8412 2.6189 -2.3818 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1603 1.1671 15 6 1.9922 1.3061 2.4722 16 7 2.3108 2.2060 3.5888 17 6 2.0784 1.5454 4.8801 18 1 2.2714 0.4753 4.8046 19 6 0.6346 1.8085 5.3839 20 6 0.8087 1.6641 6.9163 21 7 2.1317 2.2482 7.2026 22 6 2.5256 2.7585 8.3862 23 8 3.6427 3.2146 8.5083 24 6 1.5778 2.7627 9.5578 25 9 2.1663 3.4398 10.6313 26 9 0.3904 3.4073 9.1946 27 6 2.9506 2.1810 5.9833 28 1 3.2533 3.1845 5.6844 29 6 4.1863 1.3143 6.2336 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0285 36 1 2.0954 3.1411 -1.1385 37 1 3.6754 3.5169 -4.4435 38 1 2.6228 0.4189 2.5299 39 1 0.9444 1.0115 2.5302 40 1 1.7856 3.0650 3.5220 41 1 0.3063 2.8141 5.1209 42 1 -0.0567 1.0603 4.9963 43 1 0.0288 2.2164 7.4404 44 1 0.7882 0.6127 7.2030 45 1 1.3587 1.7363 9.8517 46 1 4.7681 1.2372 5.3151 47 1 4.7971 1.7691 7.0135 48 1 3.8741 0.3193 6.5506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001394664120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:36 Heat of formation + Delta-G solvation = -157.520565 kcal Electronic energy + Delta-G solvation = -31249.698378 eV Core-core repulsion = 26589.791464 eV Total energy + Delta-G solvation = -4659.906914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -49.63279 -47.65736 -40.69534 -39.21521 -38.20403 -35.49162 -34.90161 -32.81751 -31.92827 -31.28182 -30.13901 -28.45177 -27.70590 -26.27353 -24.52388 -23.34500 -23.06236 -22.27420 -21.48658 -20.11835 -18.48325 -18.44214 -18.19012 -17.70666 -16.92286 -16.56560 -16.31025 -16.09494 -15.83460 -14.99608 -14.99002 -14.54757 -14.41951 -14.37810 -14.27148 -14.12245 -13.86600 -13.63490 -13.44482 -13.37735 -13.17038 -12.80943 -12.66302 -12.59349 -12.50930 -12.25525 -12.03908 -11.92220 -11.78596 -11.68083 -11.31977 -11.20052 -11.12523 -10.93869 -10.76106 -10.53569 -10.30279 -10.13380 -9.65736 -9.21970 -8.96662 -8.47141 -8.43292 -7.68865 -6.04554 -4.09142 1.72255 2.01263 3.22225 3.31942 3.35647 3.36908 3.42757 3.44463 3.60152 3.97653 4.04986 4.12077 4.19285 4.35451 4.45935 4.59592 4.74015 4.85585 5.00021 5.01628 5.16247 5.17970 5.23214 5.30097 5.30568 5.34766 5.48072 5.51568 5.56850 5.59806 5.70878 5.80685 5.92130 5.95283 6.06010 6.17447 6.40499 6.73424 6.81756 7.07206 7.22349 7.36420 7.42658 7.53047 7.91864 8.23019 8.39778 8.89796 9.08167 9.56035 11.03519 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002130 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.427806 B =13145.115811 C =13982.693373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.660 5.660 17 C 0.085 3.915 18 H 0.098 0.902 19 C -0.166 4.166 20 C 0.087 3.913 21 N -0.601 5.601 22 C 0.486 3.514 23 O -0.497 6.497 24 C 0.262 3.738 25 F -0.175 7.175 26 F -0.187 7.187 27 C 0.141 3.859 28 H 0.093 0.907 29 C -0.158 4.158 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.356 0.644 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.135 0.865 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.536 -9.881 23.534 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.288 3.712 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.292 5.292 17 C -0.027 4.027 18 H 0.116 0.884 19 C -0.205 4.205 20 C -0.036 4.036 21 N -0.336 5.336 22 C 0.270 3.730 23 O -0.371 6.371 24 C 0.204 3.796 25 F -0.156 7.156 26 F -0.168 7.168 27 C 0.039 3.961 28 H 0.111 0.889 29 C -0.216 4.216 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.177 0.823 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.152 0.848 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.015 -8.966 23.447 26.672 hybrid contribution -0.191 -0.193 -0.324 0.423 sum -9.206 -9.159 23.123 26.520 Atomic orbital electron populations 1.22221 0.96884 1.01353 1.02234 1.21405 0.93385 0.84346 1.02662 1.48257 1.63932 1.13206 1.07723 1.19250 0.96252 0.93588 0.78037 1.21389 0.96912 1.31924 1.06236 0.92533 1.24932 0.97845 0.94916 0.96417 1.69918 1.35737 1.33422 1.14376 0.86562 0.84848 0.78207 0.77832 1.20287 1.21207 1.20121 1.20140 0.79006 0.87155 0.84849 1.90694 1.44800 1.17960 1.86887 1.21934 1.00045 0.96583 0.90337 1.59934 1.63032 1.07049 0.99187 1.22674 0.91888 0.99035 0.89089 0.88361 1.23577 0.98899 1.03785 0.94284 1.22583 0.84610 0.99030 0.97353 1.48530 1.15898 1.59026 1.10178 1.20625 0.88888 0.79937 0.83586 1.90834 1.20119 1.44197 1.81904 1.21594 0.78983 0.94521 0.84460 1.93071 1.84254 1.82762 1.55518 1.93027 1.47533 1.84344 1.91909 1.21665 0.90906 1.01599 0.81959 0.88887 1.22085 0.97273 0.98821 1.03433 0.93272 0.92000 0.92201 0.89909 0.91880 0.95085 0.93961 0.92677 0.88561 0.92734 0.82321 0.89762 0.89195 0.89254 0.90426 0.84769 0.90402 0.91378 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.55 5.93 -4.04 -0.02 1.53 16 3 N -0.60 -11.90 2.46 -175.05 -0.43 -12.33 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.50 9.75 7.71 -10.99 -0.08 9.66 16 14 O -0.53 -12.81 15.78 5.55 0.09 -12.72 16 15 C 0.04 0.55 4.58 -4.98 -0.02 0.53 16 16 N -0.66 -8.11 5.94 -106.05 -0.63 -8.74 16 17 C 0.08 0.72 2.80 -65.88 -0.18 0.54 16 18 H 0.10 0.73 7.53 -51.93 -0.39 0.34 16 19 C -0.17 -1.02 6.67 -24.58 -0.16 -1.18 16 20 C 0.09 0.46 6.65 -2.53 -0.02 0.45 16 21 N -0.60 -5.15 3.07 -163.01 -0.50 -5.65 16 22 C 0.49 4.95 7.47 -10.98 -0.08 4.87 16 23 O -0.50 -7.14 15.67 5.56 0.09 -7.05 16 24 C 0.26 1.88 5.16 36.01 0.19 2.06 16 25 F -0.18 -1.74 16.95 2.25 0.04 -1.70 16 26 F -0.19 -1.44 15.39 2.25 0.03 -1.41 16 27 C 0.14 1.42 3.21 -66.94 -0.22 1.20 16 28 H 0.09 1.18 8.03 -51.93 -0.42 0.76 16 29 C -0.16 -1.58 9.09 37.16 0.34 -1.24 16 30 H 0.05 0.54 7.22 -51.94 -0.38 0.16 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.10 1.12 7.34 -51.93 -0.38 0.74 16 39 H 0.05 0.56 7.19 -51.93 -0.37 0.18 16 40 H 0.36 4.62 7.92 -39.29 -0.31 4.31 16 41 H 0.08 0.59 7.78 -51.93 -0.40 0.19 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.41 6.18 -51.93 -0.32 0.09 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -35.83 398.15 -7.33 -43.16 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.39 Total: -0.30 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -0.34 Total: 9.66 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.82 Total: -52.47 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.17 Total: -19.77 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.83 -7.33 -43.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001394664120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.361 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds