Wall clock time and date at job start Wed Apr 1 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47041 * 2 1 4 4 C 1.46500 * 119.99726 * 270.00018 * 3 2 1 5 5 C 1.50700 * 109.47226 * 269.99496 * 4 3 2 6 6 H 1.08000 * 119.99702 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00434 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99587 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47093 * 59.99966 * 9 7 5 11 11 H 1.48502 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47078 * 299.99860 * 9 7 5 13 13 C 1.34770 * 120.00186 * 89.99546 * 3 2 1 14 14 O 1.21284 * 120.00024 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00033 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47333 * 179.97438 * 15 13 3 17 17 C 1.46902 * 110.99997 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.64307 * 31.86312 * 17 16 15 19 19 C 1.55156 * 110.87431 * 268.60908 * 17 16 15 20 20 C 1.54908 * 101.58197 * 206.06428 * 19 17 16 21 21 N 1.47422 * 104.83357 * 37.01425 * 20 19 17 22 22 C 1.34774 * 125.65171 * 155.91447 * 21 20 19 23 23 O 1.21281 * 120.00298 * 179.97438 * 22 21 20 24 24 C 1.50705 * 119.99741 * 359.94939 * 22 21 20 25 25 F 1.39902 * 109.47009 * 185.00242 * 24 22 21 26 26 F 1.39905 * 109.46711 * 304.99447 * 24 22 21 27 27 C 1.47031 * 108.70136 * 335.86884 * 21 20 19 28 28 H 1.08994 * 109.87878 * 120.47623 * 27 21 20 29 29 C 1.53003 * 109.88127 * 241.64370 * 27 21 20 30 30 H 1.08987 * 109.47516 * 300.00357 * 1 2 3 31 31 H 1.09003 * 109.47107 * 60.00428 * 1 2 3 32 32 H 1.09002 * 109.46775 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47387 * 239.99863 * 2 1 3 34 34 H 1.09003 * 109.47107 * 119.99572 * 2 1 3 35 35 H 1.09004 * 109.47653 * 29.99786 * 4 3 2 36 36 H 1.09006 * 109.47174 * 149.99616 * 4 3 2 37 37 H 0.97001 * 119.99873 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.46995 * 60.00120 * 15 13 3 39 39 H 1.08999 * 109.47358 * 299.99887 * 15 13 3 40 40 H 1.00903 * 110.99760 * 56.04762 * 16 15 13 41 41 H 1.08999 * 111.00338 * 324.14368 * 19 17 16 42 42 H 1.09000 * 110.99867 * 87.95017 * 19 17 16 43 43 H 1.09000 * 110.36459 * 155.84880 * 20 19 17 44 44 H 1.08998 * 110.36772 * 278.17049 * 20 19 17 45 45 H 1.08996 * 109.47367 * 64.99385 * 24 22 21 46 46 H 1.09000 * 109.46935 * 177.81158 * 29 27 21 47 47 H 1.09003 * 109.46781 * 297.81066 * 29 27 21 48 48 H 1.08995 * 109.47287 * 57.80746 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0961 7 6 4.1494 2.3905 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9134 2.0965 -3.4169 10 1 6.1403 0.6398 -3.5952 11 1 6.1610 2.7966 -4.7030 12 1 6.8412 2.6189 -2.3818 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1603 1.1671 15 6 1.9922 1.3061 2.4722 16 7 2.3108 2.2060 3.5888 17 6 2.0784 1.5454 4.8801 18 1 2.2714 0.4753 4.8046 19 6 0.6346 1.8085 5.3839 20 6 0.8087 1.6641 6.9163 21 7 2.1317 2.2482 7.2026 22 6 2.5256 2.7585 8.3862 23 8 3.6427 3.2146 8.5083 24 6 1.5778 2.7627 9.5578 25 9 2.1663 3.4398 10.6313 26 9 0.3904 3.4073 9.1946 27 6 2.9506 2.1810 5.9833 28 1 3.2533 3.1845 5.6844 29 6 4.1863 1.3143 6.2336 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0285 36 1 2.0954 3.1411 -1.1385 37 1 3.6754 3.5169 -4.4435 38 1 2.6228 0.4189 2.5299 39 1 0.9444 1.0115 2.5302 40 1 1.7856 3.0650 3.5220 41 1 0.3063 2.8141 5.1209 42 1 -0.0567 1.0603 4.9963 43 1 0.0288 2.2164 7.4404 44 1 0.7882 0.6127 7.2030 45 1 1.3587 1.7363 9.8517 46 1 4.7681 1.2372 5.3151 47 1 4.7971 1.7691 7.0135 48 1 3.8741 0.3193 6.5506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001394664120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:25 Heat of formation + Delta-G solvation = -184.197027 kcal Electronic energy + Delta-G solvation = -31250.855156 eV Core-core repulsion = 26589.791464 eV Total energy + Delta-G solvation = -4661.063692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -50.23994 -48.28334 -41.43188 -40.64515 -39.06742 -36.95394 -35.94272 -34.86623 -32.69551 -32.04525 -31.52089 -29.65865 -28.70615 -27.53158 -25.59918 -24.52405 -23.96034 -23.72472 -22.14482 -20.84439 -19.85512 -19.09520 -18.79883 -18.62426 -18.38014 -17.90013 -17.52075 -17.27417 -16.65447 -16.55480 -16.08436 -15.73284 -15.50091 -15.25670 -15.06051 -14.90363 -14.68183 -14.56242 -14.45247 -14.37639 -14.10189 -14.03491 -13.79703 -13.54660 -13.34969 -13.25592 -13.15746 -13.08440 -13.08210 -12.74140 -12.62575 -12.61318 -12.47274 -12.15657 -12.02773 -11.81471 -11.74099 -11.71494 -11.07571 -10.63692 -10.51833 -9.91667 -9.43719 -9.29574 -8.21684 -6.36116 0.98225 1.35252 1.35927 1.40514 1.47386 1.90820 2.28619 2.42747 2.69303 2.94597 3.07588 3.11955 3.47492 3.49567 3.65004 3.71938 3.80567 4.00304 4.15307 4.20238 4.25810 4.32459 4.40099 4.49548 4.50500 4.56262 4.66969 4.70053 4.71341 4.95211 5.01026 5.02542 5.04017 5.08495 5.09686 5.19075 5.23332 5.24725 5.44201 5.59802 5.86879 6.00244 6.08517 6.15596 6.26813 6.64229 6.72537 6.88145 7.30433 7.57097 8.84850 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002130 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.427806 B =13145.115811 C =13982.693373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.490 3.510 14 O -0.591 6.591 15 C 0.064 3.936 16 N -0.686 5.686 17 C 0.092 3.908 18 H 0.124 0.876 19 C -0.159 4.159 20 C 0.085 3.915 21 N -0.596 5.596 22 C 0.476 3.524 23 O -0.554 6.554 24 C 0.267 3.733 25 F -0.194 7.194 26 F -0.189 7.189 27 C 0.137 3.863 28 H 0.052 0.948 29 C -0.150 4.150 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.021 0.979 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.347 0.653 41 H 0.069 0.931 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.194 0.806 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.103 -13.697 25.254 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.279 3.721 14 O -0.472 6.472 15 C -0.068 4.068 16 N -0.317 5.317 17 C -0.019 4.019 18 H 0.142 0.858 19 C -0.198 4.198 20 C -0.036 4.036 21 N -0.329 5.329 22 C 0.261 3.739 23 O -0.432 6.432 24 C 0.211 3.789 25 F -0.175 7.175 26 F -0.170 7.170 27 C 0.034 3.966 28 H 0.070 0.930 29 C -0.208 4.208 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.039 0.961 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.113 0.887 40 H 0.167 0.833 41 H 0.088 0.912 42 H 0.139 0.861 43 H 0.118 0.882 44 H 0.133 0.867 45 H 0.210 0.790 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.647 -12.860 25.179 30.212 hybrid contribution 0.262 1.030 -0.879 1.380 sum -10.385 -11.830 24.300 28.953 Atomic orbital electron populations 1.22152 0.94475 1.03505 1.01678 1.21768 0.95335 0.81216 1.04013 1.48284 1.64072 1.15199 1.06108 1.18641 0.95057 0.91416 0.80716 1.21695 0.98017 1.31802 1.06366 0.92920 1.25853 1.02270 0.94586 0.96573 1.70042 1.37757 1.34289 1.14822 0.85509 0.79195 0.79099 0.77261 1.18263 1.20446 1.20581 1.21411 0.77280 0.86691 0.86695 1.90661 1.47528 1.21009 1.87961 1.21830 1.02820 0.95872 0.86247 1.59846 1.63957 1.07228 1.00715 1.22679 0.93162 0.99536 0.86488 0.85795 1.23564 0.97454 1.04040 0.94757 1.22909 0.82771 1.01084 0.96841 1.48606 1.16971 1.58188 1.09148 1.21320 0.88808 0.79086 0.84694 1.90808 1.22692 1.46657 1.83030 1.21942 0.77729 0.96751 0.82463 1.93032 1.84714 1.83510 1.56245 1.93023 1.47317 1.84760 1.91899 1.21562 0.91868 0.99685 0.83501 0.92953 1.21988 0.96884 0.99875 1.02057 0.91679 0.94774 0.88572 0.91423 0.87653 0.96120 0.98885 0.92484 0.86216 0.88671 0.83302 0.91229 0.86069 0.88171 0.86671 0.78969 0.91457 0.93882 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.24 71.98 0.74 -2.58 16 2 C 0.10 2.65 5.93 86.38 0.51 3.17 16 3 N -0.60 -24.15 2.46 -826.13 -2.03 -26.18 16 4 C 0.26 14.08 5.16 85.63 0.44 14.52 16 5 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.35 5.46 84.66 0.46 0.81 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 9 Si 0.96 45.37 29.54 68.60 2.03 47.39 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 C 0.49 19.02 7.71 87.66 0.68 19.70 16 14 O -0.59 -30.17 15.78 -3.04 -0.05 -30.21 16 15 C 0.06 1.44 4.58 85.56 0.39 1.83 16 16 N -0.69 -15.97 5.94 -489.44 -2.91 -18.87 16 17 C 0.09 1.30 2.80 46.10 0.13 1.43 16 18 H 0.12 1.17 7.53 -2.39 -0.02 1.15 16 19 C -0.16 -1.31 6.67 31.99 0.21 -1.10 16 20 C 0.09 0.53 6.65 86.86 0.58 1.11 16 21 N -0.60 -9.12 3.07 -788.04 -2.42 -11.53 16 22 C 0.48 9.32 7.47 87.66 0.66 9.98 16 23 O -0.55 -16.64 15.67 -3.03 -0.05 -16.69 16 24 C 0.27 3.22 5.16 71.24 0.37 3.58 16 25 F -0.19 -3.68 16.95 44.97 0.76 -2.92 16 26 F -0.19 -2.45 15.39 44.97 0.69 -1.76 16 27 C 0.14 2.67 3.21 45.34 0.15 2.82 16 28 H 0.05 1.43 8.03 -2.39 -0.02 1.42 16 29 C -0.15 -2.92 9.09 71.98 0.65 -2.26 16 30 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 34 H 0.11 1.95 6.44 -2.39 -0.02 1.94 16 35 H 0.02 1.13 8.07 -2.38 -0.02 1.11 16 36 H -0.01 -0.44 7.42 -2.38 -0.02 -0.45 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.12 2.21 7.34 -2.38 -0.02 2.19 16 39 H 0.10 1.43 7.19 -2.39 -0.02 1.41 16 40 H 0.35 9.08 7.92 -89.69 -0.71 8.37 16 41 H 0.07 0.82 7.78 -2.39 -0.02 0.80 16 42 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.10 0.49 6.18 -2.39 -0.01 0.48 16 44 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.19 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.04 1.05 6.90 -2.39 -0.02 1.03 16 48 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -87.96 398.15 2.80 -85.16 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.27 Total: 9.96 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 6.21 Total: 22.07 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -7.06 Total: -113.00 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.10 Total: -46.91 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 1.45 Total: -4.68 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -87.96 2.80 -85.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001394664120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.035 kcal (2) G-P(sol) polarization free energy of solvation -87.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds