Wall clock time and date at job start Wed Apr 1 2020 04:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46509 * 109.46836 * 2 1 4 4 C 1.46496 * 120.00279 * 270.00041 * 3 2 1 5 5 C 1.50699 * 109.47370 * 270.00241 * 4 3 2 6 6 H 1.07997 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00206 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99688 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00394 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47012 * 89.99936 * 9 7 5 11 11 H 1.48498 * 109.47449 * 210.00648 * 9 7 5 12 12 H 1.48505 * 109.46832 * 330.00731 * 9 7 5 13 13 C 1.34779 * 119.99491 * 90.00700 * 3 2 1 14 14 O 1.21283 * 119.99626 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00245 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47149 * 186.12325 * 15 13 3 17 17 C 1.47894 * 111.00165 * 176.61764 * 16 15 13 18 18 C 1.53997 * 107.22892 * 214.25490 * 17 16 15 19 19 C 1.54600 * 105.13860 * 1.12395 * 18 17 16 20 20 H 1.08996 * 110.72856 * 263.60437 * 19 18 17 21 21 C 1.52997 * 110.72305 * 140.31291 * 19 18 17 22 22 N 1.46501 * 109.46953 * 66.45864 * 21 19 18 23 23 C 1.34780 * 119.99961 * 179.97438 * 22 21 19 24 24 O 1.21285 * 119.99936 * 359.97438 * 23 22 21 25 25 C 1.50697 * 119.99829 * 179.97438 * 23 22 21 26 26 F 1.39897 * 109.47036 * 54.99979 * 25 23 22 27 27 F 1.39903 * 109.46818 * 175.00234 * 25 23 22 28 28 C 1.48813 * 111.18386 * 59.27803 * 16 15 13 29 29 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47257 * 299.99236 * 1 2 3 31 31 H 1.08993 * 109.47427 * 59.99515 * 1 2 3 32 32 H 1.09000 * 109.47257 * 240.00764 * 2 1 3 33 33 H 1.09002 * 109.47615 * 120.00295 * 2 1 3 34 34 H 1.09005 * 109.46987 * 30.00066 * 4 3 2 35 35 H 1.08993 * 109.47241 * 150.00088 * 4 3 2 36 36 H 0.97005 * 119.99564 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46833 * 66.12335 * 15 13 3 38 38 H 1.08999 * 109.46826 * 306.12411 * 15 13 3 39 39 H 1.08997 * 109.91702 * 94.80205 * 17 16 15 40 40 H 1.08999 * 109.91413 * 333.70520 * 17 16 15 41 41 H 1.08999 * 110.31190 * 120.03515 * 18 17 16 42 42 H 1.08993 * 110.30894 * 242.21318 * 18 17 16 43 43 H 1.09002 * 109.46791 * 186.45371 * 21 19 18 44 44 H 1.08994 * 109.47608 * 306.45184 * 21 19 18 45 45 H 0.96998 * 119.99921 * 359.97438 * 22 21 19 46 46 H 1.09003 * 109.47172 * 294.99755 * 25 23 22 47 47 H 1.08997 * 110.51800 * 41.07240 * 28 16 15 48 48 H 1.09003 * 110.69963 * 278.02354 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7038 6 1 4.3425 1.2304 -1.0962 7 6 4.1489 2.3899 -2.8779 8 7 3.3488 3.1260 -3.6180 9 14 5.9133 2.0971 -3.4170 10 1 5.9773 0.8758 -4.2592 11 1 6.3919 3.2644 -4.2003 12 1 6.7734 1.9182 -2.2196 13 6 2.2430 2.0165 1.1673 14 8 2.6467 3.1602 1.1673 15 6 1.9914 1.3062 2.4724 16 7 2.1682 2.2489 3.5850 17 6 1.8505 1.6072 4.8790 18 6 1.2201 2.6852 5.7801 19 6 1.1745 3.9624 4.9102 20 1 2.0366 4.5980 5.1125 21 6 -0.1302 4.7278 5.1402 22 7 -0.1580 5.2447 6.5107 23 6 -1.2184 5.9567 6.9410 24 8 -2.1495 6.1697 6.1934 25 6 -1.2473 6.4880 8.3509 26 9 -0.1011 7.2556 8.5834 27 9 -2.3848 7.2832 8.5263 28 6 1.2338 3.4011 3.4673 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1383 36 1 3.6749 3.5166 -4.4439 37 1 2.6965 0.4818 2.5791 38 1 0.9732 0.9173 2.4839 39 1 2.7625 1.2261 5.3384 40 1 1.1436 0.7918 4.7254 41 1 0.2123 2.3912 6.0735 42 1 1.8388 2.8502 6.6621 43 1 -0.1928 5.5584 4.4372 44 1 -0.9763 4.0579 4.9873 45 1 0.5868 5.0747 7.1084 46 1 -1.2749 5.6544 9.0528 47 1 0.2490 3.0629 3.1452 48 1 1.6289 4.1488 2.7795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001399902966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:45 Heat of formation + Delta-G solvation = -162.384908 kcal Electronic energy + Delta-G solvation = -30812.044845 eV Core-core repulsion = 26151.926997 eV Total energy + Delta-G solvation = -4660.117848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -49.62878 -47.65583 -40.29357 -39.61120 -38.29307 -35.61985 -35.18910 -32.93424 -32.39767 -30.19712 -29.94171 -28.65703 -27.85495 -26.14769 -24.75968 -23.05253 -22.52742 -21.68149 -20.96675 -20.62518 -18.85249 -18.39467 -18.26883 -17.91946 -16.87154 -16.42806 -16.26211 -15.99846 -15.83272 -15.34392 -15.22954 -14.99065 -14.58462 -14.44581 -14.09299 -14.06539 -13.97443 -13.60651 -13.47073 -13.40192 -13.24073 -12.77800 -12.61495 -12.58339 -12.21519 -12.16631 -11.93942 -11.67710 -11.47954 -11.33477 -11.20197 -11.03652 -10.91655 -10.85041 -10.75429 -10.53553 -10.41296 -10.12183 -9.68521 -9.62258 -8.88147 -8.43363 -8.35200 -7.65664 -6.04056 -4.08584 1.67574 2.11153 3.30089 3.30752 3.36591 3.38888 3.44206 3.58600 3.64208 4.03715 4.05927 4.18416 4.37201 4.44784 4.46991 4.56272 4.94316 4.99517 5.03098 5.19687 5.25381 5.30690 5.32811 5.38338 5.45773 5.50691 5.55335 5.57131 5.62220 5.72598 5.73916 5.82309 5.97976 6.00965 6.18431 6.22663 6.43155 6.70432 6.83920 6.85618 7.11332 7.37822 7.44182 7.55291 7.92663 8.23890 8.42007 8.91077 9.11004 9.56606 11.03979 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.001986 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.406486 B =14091.955869 C =14548.311135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.525 6.525 15 C 0.029 3.971 16 N -0.496 5.496 17 C 0.034 3.966 18 C -0.127 4.127 19 C -0.106 4.106 20 H 0.095 0.905 21 C 0.126 3.874 22 N -0.709 5.709 23 C 0.469 3.531 24 O -0.500 6.500 25 C 0.258 3.742 26 F -0.188 7.188 27 F -0.176 7.176 28 C 0.046 3.954 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.407 0.593 46 H 0.137 0.863 47 H 0.042 0.958 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 -3.429 24.908 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.401 6.401 15 C -0.103 4.103 16 N -0.220 5.220 17 C -0.094 4.094 18 C -0.165 4.165 19 C -0.126 4.126 20 H 0.113 0.887 21 C 0.003 3.997 22 N -0.362 5.362 23 C 0.250 3.750 24 O -0.374 6.374 25 C 0.201 3.799 26 F -0.169 7.169 27 F -0.157 7.157 28 C -0.082 4.082 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.242 0.758 46 H 0.154 0.846 47 H 0.060 0.940 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.699 -2.357 24.121 25.750 hybrid contribution 0.505 -0.630 -0.117 0.816 sum -8.194 -2.987 24.004 25.539 Atomic orbital electron populations 1.22221 0.96905 1.01371 1.02209 1.21401 0.93383 0.84363 1.02631 1.48265 1.63950 1.13218 1.07721 1.19247 0.96236 0.93585 0.78046 1.21429 0.96937 1.31819 1.06172 0.92486 1.24938 0.97843 0.94943 0.96437 1.69935 1.35692 1.33464 1.14335 0.86502 0.84737 0.77638 0.78578 1.20696 1.21101 1.19877 1.20082 0.78955 0.87138 0.84721 1.90642 1.44810 1.17834 1.86805 1.22310 1.01064 0.95907 0.91001 1.64610 1.49906 1.07129 1.00376 1.22894 0.99811 0.96125 0.90543 1.22511 1.00957 0.94667 0.98376 1.22374 0.97047 0.96485 0.96673 0.88675 1.21531 0.97987 0.98635 0.81517 1.45909 1.20543 1.54028 1.15677 1.21066 0.84040 0.80441 0.89450 1.90853 1.35269 1.56288 1.54953 1.21649 0.72548 0.88828 0.96864 1.93070 1.50061 1.78232 1.95535 1.93073 1.50447 1.76245 1.95927 1.23354 0.94521 0.94842 0.95480 0.92182 0.93349 0.91959 0.89877 0.91925 0.95115 0.93937 0.92742 0.88274 0.92547 0.90169 0.93789 0.91277 0.90839 0.90247 0.90694 0.75770 0.84557 0.93953 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.18 37.16 0.38 -1.78 16 2 C 0.11 1.64 5.85 -4.04 -0.02 1.61 16 3 N -0.60 -12.24 2.46 -175.06 -0.43 -12.67 16 4 C 0.25 6.38 5.16 -5.20 -0.03 6.35 16 5 C -0.52 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 10.10 7.31 -10.98 -0.08 10.02 16 14 O -0.52 -12.69 13.89 5.56 0.08 -12.61 16 15 C 0.03 0.41 3.78 -4.98 -0.02 0.39 16 16 N -0.50 -6.69 5.11 -231.65 -1.18 -7.88 16 17 C 0.03 0.32 6.69 -2.76 -0.02 0.30 16 18 C -0.13 -0.89 6.20 -25.37 -0.16 -1.05 16 19 C -0.11 -0.94 3.13 -88.75 -0.28 -1.22 16 20 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 21 C 0.13 1.08 5.00 -4.04 -0.02 1.06 16 22 N -0.71 -4.76 5.40 -60.30 -0.33 -5.08 16 23 C 0.47 4.12 7.63 -10.99 -0.08 4.03 16 24 O -0.50 -6.74 16.62 5.55 0.09 -6.64 16 25 C 0.26 1.58 5.72 36.00 0.21 1.78 16 26 F -0.19 -1.33 17.32 2.25 0.04 -1.29 16 27 F -0.18 -1.64 16.95 2.25 0.04 -1.60 16 28 C 0.05 0.59 5.04 -1.74 -0.01 0.59 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 7.12 -51.93 -0.37 0.22 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.06 0.79 6.61 -51.93 -0.34 0.44 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.10 1.30 7.71 -51.93 -0.40 0.90 16 38 H 0.06 0.69 6.71 -51.93 -0.35 0.34 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.37 7.68 -51.93 -0.40 -0.03 16 41 H 0.07 0.43 7.80 -51.93 -0.41 0.02 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 45 H 0.41 1.59 8.33 -40.82 -0.34 1.25 16 46 H 0.14 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.04 0.53 7.92 -51.93 -0.41 0.12 16 48 H 0.11 1.81 6.46 -51.93 -0.34 1.48 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -36.23 399.51 -8.01 -44.24 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -7.50 Total: -2.11 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.55 Total: 8.61 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -1.20 Total: -51.47 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.26 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.23 -8.01 -44.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001399902966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.148 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds