Wall clock time and date at job start Wed Apr 1 2020 04:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46509 * 109.46836 * 2 1 4 4 C 1.46496 * 120.00279 * 270.00041 * 3 2 1 5 5 C 1.50699 * 109.47370 * 270.00241 * 4 3 2 6 6 H 1.07997 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00206 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99688 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00394 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47012 * 89.99936 * 9 7 5 11 11 H 1.48498 * 109.47449 * 210.00648 * 9 7 5 12 12 H 1.48505 * 109.46832 * 330.00731 * 9 7 5 13 13 C 1.34779 * 119.99491 * 90.00700 * 3 2 1 14 14 O 1.21283 * 119.99626 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00245 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47149 * 186.12325 * 15 13 3 17 17 C 1.47894 * 111.00165 * 176.61764 * 16 15 13 18 18 C 1.53997 * 107.22892 * 214.25490 * 17 16 15 19 19 C 1.54600 * 105.13860 * 1.12395 * 18 17 16 20 20 H 1.08996 * 110.72856 * 263.60437 * 19 18 17 21 21 C 1.52997 * 110.72305 * 140.31291 * 19 18 17 22 22 N 1.46501 * 109.46953 * 66.45864 * 21 19 18 23 23 C 1.34780 * 119.99961 * 179.97438 * 22 21 19 24 24 O 1.21285 * 119.99936 * 359.97438 * 23 22 21 25 25 C 1.50697 * 119.99829 * 179.97438 * 23 22 21 26 26 F 1.39897 * 109.47036 * 54.99979 * 25 23 22 27 27 F 1.39903 * 109.46818 * 175.00234 * 25 23 22 28 28 C 1.48813 * 111.18386 * 59.27803 * 16 15 13 29 29 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47257 * 299.99236 * 1 2 3 31 31 H 1.08993 * 109.47427 * 59.99515 * 1 2 3 32 32 H 1.09000 * 109.47257 * 240.00764 * 2 1 3 33 33 H 1.09002 * 109.47615 * 120.00295 * 2 1 3 34 34 H 1.09005 * 109.46987 * 30.00066 * 4 3 2 35 35 H 1.08993 * 109.47241 * 150.00088 * 4 3 2 36 36 H 0.97005 * 119.99564 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46833 * 66.12335 * 15 13 3 38 38 H 1.08999 * 109.46826 * 306.12411 * 15 13 3 39 39 H 1.08997 * 109.91702 * 94.80205 * 17 16 15 40 40 H 1.08999 * 109.91413 * 333.70520 * 17 16 15 41 41 H 1.08999 * 110.31190 * 120.03515 * 18 17 16 42 42 H 1.08993 * 110.30894 * 242.21318 * 18 17 16 43 43 H 1.09002 * 109.46791 * 186.45371 * 21 19 18 44 44 H 1.08994 * 109.47608 * 306.45184 * 21 19 18 45 45 H 0.96998 * 119.99921 * 359.97438 * 22 21 19 46 46 H 1.09003 * 109.47172 * 294.99755 * 25 23 22 47 47 H 1.08997 * 110.51800 * 41.07240 * 28 16 15 48 48 H 1.09003 * 110.69963 * 278.02354 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7038 6 1 4.3425 1.2304 -1.0962 7 6 4.1489 2.3899 -2.8779 8 7 3.3488 3.1260 -3.6180 9 14 5.9133 2.0971 -3.4170 10 1 5.9773 0.8758 -4.2592 11 1 6.3919 3.2644 -4.2003 12 1 6.7734 1.9182 -2.2196 13 6 2.2430 2.0165 1.1673 14 8 2.6467 3.1602 1.1673 15 6 1.9914 1.3062 2.4724 16 7 2.1682 2.2489 3.5850 17 6 1.8505 1.6072 4.8790 18 6 1.2201 2.6852 5.7801 19 6 1.1745 3.9624 4.9102 20 1 2.0366 4.5980 5.1125 21 6 -0.1302 4.7278 5.1402 22 7 -0.1580 5.2447 6.5107 23 6 -1.2184 5.9567 6.9410 24 8 -2.1495 6.1697 6.1934 25 6 -1.2473 6.4880 8.3509 26 9 -0.1011 7.2556 8.5834 27 9 -2.3848 7.2832 8.5263 28 6 1.2338 3.4011 3.4673 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1383 36 1 3.6749 3.5166 -4.4439 37 1 2.6965 0.4818 2.5791 38 1 0.9732 0.9173 2.4839 39 1 2.7625 1.2261 5.3384 40 1 1.1436 0.7918 4.7254 41 1 0.2123 2.3912 6.0735 42 1 1.8388 2.8502 6.6621 43 1 -0.1928 5.5584 4.4372 44 1 -0.9763 4.0579 4.9873 45 1 0.5868 5.0747 7.1084 46 1 -1.2749 5.6544 9.0528 47 1 0.2490 3.0629 3.1452 48 1 1.6289 4.1488 2.7795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001399902966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:41 Heat of formation + Delta-G solvation = -190.372558 kcal Electronic energy + Delta-G solvation = -30813.258480 eV Core-core repulsion = 26151.926997 eV Total energy + Delta-G solvation = -4661.331483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -50.17643 -48.22260 -41.21325 -40.74334 -39.42922 -36.93985 -36.31174 -34.93259 -33.41118 -31.63965 -30.77983 -29.57893 -29.17716 -27.52112 -25.72032 -24.67468 -23.92707 -22.48526 -21.83153 -21.33926 -19.89429 -19.46210 -18.80024 -18.61737 -18.52196 -18.01265 -17.37471 -17.02931 -16.82508 -16.53711 -16.40716 -16.03504 -15.89783 -15.28135 -15.08528 -15.01777 -14.75639 -14.55586 -14.52835 -14.47037 -14.26513 -14.08952 -13.83054 -13.66656 -13.29468 -13.22998 -13.18037 -12.99313 -12.93202 -12.67732 -12.50930 -12.48239 -12.19562 -12.08627 -11.93753 -11.85052 -11.70061 -11.51627 -11.13222 -10.64808 -10.45837 -10.39241 -9.46204 -9.28887 -8.22712 -6.37556 0.99894 1.35203 1.38598 1.48885 1.50750 1.87057 2.24860 2.41437 2.87739 3.02323 3.06533 3.08200 3.54128 3.57429 3.69155 3.75217 3.80488 3.85091 4.10966 4.21293 4.27963 4.30655 4.35459 4.42412 4.50469 4.61215 4.62409 4.72489 4.79715 4.92667 4.95513 4.97924 5.04402 5.05917 5.11444 5.20635 5.21397 5.33226 5.36536 5.58215 5.83306 5.89550 6.03034 6.06884 6.13283 6.71012 6.79805 6.84010 7.29000 7.54417 8.84139 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.001986 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.406486 B =14091.955869 C =14548.311135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.580 6.580 15 C 0.044 3.956 16 N -0.522 5.522 17 C 0.032 3.968 18 C -0.116 4.116 19 C -0.092 4.092 20 H 0.092 0.908 21 C 0.133 3.867 22 N -0.690 5.690 23 C 0.466 3.534 24 O -0.556 6.556 25 C 0.264 3.736 26 F -0.192 7.192 27 F -0.196 7.196 28 C 0.045 3.955 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.019 0.981 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.425 0.575 46 H 0.198 0.802 47 H 0.041 0.959 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 -6.212 28.098 29.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.282 3.718 14 O -0.459 6.459 15 C -0.087 4.087 16 N -0.247 5.247 17 C -0.095 4.095 18 C -0.154 4.154 19 C -0.111 4.111 20 H 0.110 0.890 21 C 0.009 3.991 22 N -0.343 5.343 23 C 0.248 3.752 24 O -0.434 6.434 25 C 0.207 3.793 26 F -0.173 7.173 27 F -0.177 7.177 28 C -0.084 4.084 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.037 0.963 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.263 0.737 46 H 0.215 0.785 47 H 0.059 0.941 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.126 -5.203 27.360 29.012 hybrid contribution 0.334 0.251 -1.135 1.210 sum -7.792 -4.951 26.225 27.802 Atomic orbital electron populations 1.22147 0.94766 1.03467 1.01431 1.21736 0.95118 0.81425 1.03963 1.48300 1.64200 1.15140 1.06206 1.18640 0.95181 0.91360 0.80497 1.21706 0.97899 1.31829 1.06392 0.92866 1.25885 1.02449 0.94522 0.96513 1.70062 1.37809 1.34294 1.14805 0.85406 0.78972 0.78180 0.78200 1.18717 1.20746 1.19742 1.21226 0.77485 0.86760 0.86362 1.90622 1.47100 1.20441 1.87771 1.22209 1.03123 0.95561 0.87768 1.64541 1.50739 1.07549 1.01842 1.23028 1.01003 0.96973 0.88456 1.22521 1.02443 0.92185 0.98234 1.22183 0.96820 0.97557 0.94576 0.88978 1.21310 0.97905 0.97741 0.82107 1.45733 1.20606 1.52966 1.15022 1.21658 0.83357 0.79804 0.90348 1.90833 1.37375 1.58425 1.56749 1.22045 0.71461 0.89740 0.96011 1.93064 1.50276 1.78627 1.95381 1.93032 1.51752 1.77090 1.95870 1.23170 0.93902 0.94194 0.97103 0.88522 0.92412 0.94502 0.91032 0.88048 0.96292 0.98841 0.92473 0.86160 0.89697 0.89167 0.92092 0.89510 0.88092 0.92842 0.90661 0.73680 0.78511 0.94066 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 10.18 71.98 0.73 -3.10 16 2 C 0.10 2.95 5.85 86.38 0.51 3.45 16 3 N -0.61 -25.50 2.46 -826.14 -2.03 -27.53 16 4 C 0.26 14.48 5.16 85.63 0.44 14.92 16 5 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 9 Si 0.97 45.51 29.54 68.60 2.03 47.53 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.49 20.25 7.31 87.66 0.64 20.89 16 14 O -0.58 -29.95 13.89 -3.04 -0.04 -29.99 16 15 C 0.04 1.19 3.78 85.56 0.32 1.51 16 16 N -0.52 -13.39 5.11 -886.80 -4.54 -17.92 16 17 C 0.03 0.48 6.69 86.45 0.58 1.06 16 18 C -0.12 -1.18 6.20 31.48 0.20 -0.99 16 19 C -0.09 -1.53 3.13 -9.58 -0.03 -1.56 16 20 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 21 C 0.13 2.23 5.00 86.38 0.43 2.66 16 22 N -0.69 -8.00 5.40 -463.06 -2.50 -10.50 16 23 C 0.47 7.61 7.63 87.66 0.67 8.28 16 24 O -0.56 -15.22 16.62 -3.05 -0.05 -15.27 16 25 C 0.26 2.57 5.72 71.24 0.41 2.98 16 26 F -0.19 -2.28 17.32 44.97 0.78 -1.50 16 27 F -0.20 -3.43 16.95 44.97 0.76 -2.67 16 28 C 0.04 1.18 5.04 86.60 0.44 1.62 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.27 7.12 -2.39 -0.02 1.26 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 33 H 0.10 2.21 6.61 -2.39 -0.02 2.20 16 34 H 0.02 1.06 8.07 -2.38 -0.02 1.04 16 35 H -0.01 -0.42 7.42 -2.39 -0.02 -0.43 16 36 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 37 H 0.12 2.74 7.71 -2.39 -0.02 2.72 16 38 H 0.09 1.80 6.71 -2.39 -0.02 1.78 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 0.73 7.68 -2.39 -0.02 0.72 16 41 H 0.09 0.65 7.80 -2.39 -0.02 0.63 16 42 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.29 8.07 -2.39 -0.02 1.27 16 45 H 0.42 1.94 8.33 -92.71 -0.77 1.17 16 46 H 0.20 -0.41 8.14 -2.39 -0.02 -0.42 16 47 H 0.04 1.06 7.92 -2.39 -0.02 1.04 16 48 H 0.06 2.21 6.46 -2.39 -0.02 2.20 16 Total: -1.00 -87.35 399.51 0.93 -86.42 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.21 Total: 7.11 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 6.03 Total: 21.23 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -8.78 Total: -112.85 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -0.09 Total: -45.26 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 1.54 Total: -4.17 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -87.35 0.93 -86.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001399902966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.956 kcal (2) G-P(sol) polarization free energy of solvation -87.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds