Wall clock time and date at job start Wed Apr 1 2020 04:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46899 * 2 1 4 4 C 1.46498 * 120.00541 * 269.99852 * 3 2 1 5 5 C 1.50694 * 109.47358 * 270.00295 * 4 3 2 6 6 H 1.08005 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99980 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00054 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00078 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47194 * 90.00079 * 9 7 5 11 11 H 1.48501 * 109.47306 * 210.00172 * 9 7 5 12 12 H 1.48501 * 109.46944 * 329.99740 * 9 7 5 13 13 C 1.34786 * 119.99485 * 90.00290 * 3 2 1 14 14 O 1.21277 * 119.99764 * 179.97438 * 13 3 2 15 15 C 1.50694 * 119.99887 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.47034 * 180.02562 * 15 13 3 17 17 C 1.46904 * 111.00057 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46936 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.47037 * 295.00065 * 18 17 16 20 20 C 1.52999 * 109.46779 * 175.00147 * 18 17 16 21 21 N 1.46496 * 109.46990 * 54.99984 * 18 17 16 22 22 C 1.34774 * 119.99757 * 204.99449 * 21 18 17 23 23 O 1.21282 * 120.00208 * 0.02562 * 22 21 18 24 24 C 1.50703 * 120.00167 * 180.02562 * 22 21 18 25 25 H 1.09007 * 115.55644 * 325.69499 * 24 22 21 26 26 C 1.53069 * 117.49649 * 111.39727 * 24 22 21 27 27 C 1.52995 * 117.50261 * 180.02562 * 24 22 21 28 28 F 1.39905 * 117.50066 * 145.01999 * 27 24 22 29 29 F 1.39897 * 117.49662 * 0.02562 * 27 24 22 30 30 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47221 * 299.99491 * 1 2 3 32 32 H 1.09000 * 109.46911 * 59.99896 * 1 2 3 33 33 H 1.08998 * 109.46703 * 240.00430 * 2 1 3 34 34 H 1.08997 * 109.47206 * 120.00526 * 2 1 3 35 35 H 1.09002 * 109.46718 * 30.00714 * 4 3 2 36 36 H 1.08998 * 109.47053 * 150.00108 * 4 3 2 37 37 H 0.96996 * 119.99981 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47837 * 60.00014 * 15 13 3 39 39 H 1.08998 * 109.47326 * 299.99789 * 15 13 3 40 40 H 1.00901 * 110.99858 * 303.94748 * 16 15 13 41 41 H 1.09000 * 109.46756 * 59.99814 * 17 16 15 42 42 H 1.08996 * 109.47249 * 299.99838 * 17 16 15 43 43 H 1.09004 * 109.47269 * 299.99776 * 20 18 17 44 44 H 1.08999 * 109.47170 * 60.00125 * 20 18 17 45 45 H 1.09006 * 109.46909 * 180.02562 * 20 18 17 46 46 H 0.97002 * 120.00236 * 25.00471 * 21 18 17 47 47 H 1.09000 * 117.49477 * 0.02562 * 26 24 22 48 48 H 1.08999 * 117.51921 * 214.96567 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 3.6858 1.8352 -1.7037 6 1 4.3427 1.2304 -1.0962 7 6 4.1490 2.3900 -2.8778 8 7 5.3910 2.1829 -3.2578 9 14 3.0128 3.4355 -3.9290 10 1 3.1163 4.8558 -3.5078 11 1 3.4056 3.3125 -5.3558 12 1 1.6130 2.9695 -3.7590 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1674 15 6 1.9913 1.3062 2.4723 16 7 2.3090 2.2063 3.5890 17 6 2.0745 1.5463 4.8803 18 6 2.4163 2.5125 6.0163 19 1 3.4832 2.7347 5.9956 20 6 2.0549 1.8709 7.3575 21 7 1.6556 3.7530 5.8477 22 6 2.1175 4.9037 6.3758 23 8 3.1631 4.9123 6.9903 24 6 1.3348 6.1799 6.2029 25 1 0.8006 6.2795 5.2580 26 6 0.6849 6.7848 7.4498 27 6 1.9122 7.4527 6.8253 28 9 1.7137 8.6552 6.1383 29 9 3.1267 7.3429 7.5110 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5817 1.6879 -2.0283 36 1 2.0955 3.1412 -1.1382 37 1 5.7168 2.5729 -4.0840 38 1 2.6211 0.4184 2.5303 39 1 0.9432 1.0124 2.5299 40 1 3.2574 2.5443 3.5223 41 1 2.7050 0.6603 4.9552 42 1 1.0270 1.2541 4.9541 43 1 0.9880 1.6486 7.3782 44 1 2.6209 0.9478 7.4829 45 1 2.2980 2.5594 8.1668 46 1 0.8195 3.7463 5.3560 47 1 0.8241 6.2598 8.3948 48 1 -0.2768 7.2825 7.3253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401683526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:34 Heat of formation + Delta-G solvation = -131.697092 kcal Electronic energy + Delta-G solvation = -30798.632513 eV Core-core repulsion = 26139.845388 eV Total energy + Delta-G solvation = -4658.787124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.86855 -47.51462 -40.17894 -39.27428 -37.26011 -35.81596 -35.41795 -34.33589 -32.72197 -31.29841 -30.38550 -28.63741 -26.92810 -25.27897 -24.10445 -23.02418 -22.88604 -21.90481 -21.40936 -20.57200 -18.61351 -18.42599 -17.40054 -16.95579 -16.80594 -16.66884 -16.30854 -16.05329 -15.65878 -15.35326 -15.18779 -14.54611 -14.43018 -14.16706 -14.09791 -13.95068 -13.85117 -13.60028 -13.57493 -13.49380 -13.23260 -12.89061 -12.70347 -12.57335 -12.39281 -12.26995 -12.16072 -11.96018 -11.70807 -11.55049 -11.39680 -11.16800 -10.99414 -10.76784 -10.51693 -10.49147 -10.17471 -10.04323 -9.56451 -9.28344 -9.06824 -8.60510 -8.49627 -7.74982 -6.10489 -4.09433 2.02866 2.55051 2.77354 3.08715 3.27814 3.31299 3.33692 3.35857 3.55566 3.85683 4.01809 4.18692 4.28813 4.38162 4.53019 4.61532 4.83835 4.94338 4.95884 5.05370 5.15182 5.19163 5.21760 5.24046 5.31733 5.34663 5.37066 5.39197 5.42981 5.52131 5.68230 5.71581 5.86656 5.91514 6.10022 6.26395 6.33976 6.61505 6.79227 6.94900 7.24049 7.29541 7.32858 7.59515 7.99608 8.23016 8.44978 8.90712 8.97253 9.49870 11.02946 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.002452 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.410460 B =11416.924096 C =12980.684760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.529 4.529 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.506 3.494 14 O -0.527 6.527 15 C 0.042 3.958 16 N -0.672 5.672 17 C 0.049 3.951 18 C 0.145 3.855 19 H 0.089 0.911 20 C -0.161 4.161 21 N -0.699 5.699 22 C 0.544 3.456 23 O -0.527 6.527 24 C -0.194 4.194 25 H 0.151 0.849 26 C -0.149 4.149 27 C 0.230 3.770 28 F -0.156 7.156 29 F -0.139 7.139 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.355 0.645 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.407 0.593 47 H 0.126 0.874 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.409 -1.152 22.008 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.090 4.090 16 N -0.306 5.306 17 C -0.081 4.081 18 C 0.040 3.960 19 H 0.107 0.893 20 C -0.220 4.220 21 N -0.350 5.350 22 C 0.328 3.672 23 O -0.403 6.403 24 C -0.216 4.216 25 H 0.169 0.831 26 C -0.188 4.188 27 C 0.192 3.808 28 F -0.136 7.136 29 F -0.119 7.119 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.175 0.825 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.242 0.758 47 H 0.145 0.855 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.856 -0.166 22.258 26.761 hybrid contribution 0.022 -0.080 -1.140 1.143 sum -14.834 -0.246 21.118 25.809 Atomic orbital electron populations 1.22233 0.96753 1.01531 1.02257 1.21436 0.93399 0.83933 1.03034 1.47939 1.64413 1.13321 1.07015 1.19624 0.97230 0.93381 0.80057 1.21318 0.95369 1.32931 1.07131 0.90891 1.24864 0.95003 0.95791 0.97377 1.69897 1.15162 1.44993 1.23561 0.86841 0.81405 0.81645 0.79733 1.19874 1.21083 1.19089 1.20191 0.78689 0.87081 0.84874 1.90688 1.44824 1.17831 1.86901 1.21886 1.02342 0.94443 0.90351 1.60125 1.33249 1.37317 0.99864 1.22313 1.01997 0.95119 0.88657 1.20988 0.97548 0.83482 0.94021 0.89264 1.22140 1.01865 1.01107 0.96880 1.45684 1.26504 1.07096 1.55747 1.19145 0.85161 0.83671 0.79218 1.90793 1.22710 1.85813 1.40938 1.23663 1.03272 0.92836 1.01850 0.83093 1.24289 0.96948 0.99971 0.97544 1.19458 0.84211 0.81587 0.95501 1.93064 1.94768 1.46137 1.79660 1.93128 1.44415 1.95679 1.78667 0.92021 0.92976 0.92198 0.89745 0.91579 0.95331 0.94618 0.92542 0.92651 0.88684 0.82484 0.93460 0.90261 0.92231 0.91406 0.91777 0.75785 0.85533 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.11 1.53 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -11.61 2.46 -175.06 -0.43 -12.04 16 4 C 0.22 5.22 4.23 -5.20 -0.02 5.20 16 5 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 6 H 0.07 2.28 8.06 -52.48 -0.42 1.86 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 9 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.51 9.70 7.71 -10.98 -0.08 9.62 16 14 O -0.53 -12.56 15.78 5.56 0.09 -12.47 16 15 C 0.04 0.55 4.72 -4.98 -0.02 0.52 16 16 N -0.67 -8.19 5.85 -115.06 -0.67 -8.86 16 17 C 0.05 0.41 5.24 -3.82 -0.02 0.39 16 18 C 0.14 1.28 2.81 -67.93 -0.19 1.09 16 19 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 20 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 21 N -0.70 -6.30 4.80 -53.81 -0.26 -6.56 16 22 C 0.54 6.09 7.58 -10.99 -0.08 6.01 16 23 O -0.53 -7.95 14.81 5.56 0.08 -7.87 16 24 C -0.19 -1.69 6.17 -91.74 -0.57 -2.26 16 25 H 0.15 1.05 8.14 -51.93 -0.42 0.62 16 26 C -0.15 -0.93 10.21 -26.67 -0.27 -1.20 16 27 C 0.23 2.41 5.19 -26.71 -0.14 2.28 16 28 F -0.16 -1.76 17.60 2.25 0.04 -1.72 16 29 F -0.14 -1.90 15.71 2.25 0.04 -1.86 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.55 7.22 -51.93 -0.37 0.18 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 34 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 35 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 36 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.06 0.65 7.40 -51.93 -0.38 0.27 16 39 H 0.10 1.01 7.18 -51.93 -0.37 0.64 16 40 H 0.36 5.11 8.43 -39.29 -0.33 4.78 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.41 2.99 8.60 -40.82 -0.35 2.64 16 47 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -37.00 406.81 -7.52 -44.52 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.50 Total: 3.38 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -1.13 Total: 7.39 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.59 Total: -54.38 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.17 Total: -20.33 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.00 -7.52 -44.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401683526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.173 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds