Wall clock time and date at job start Wed Apr 1 2020 04:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46899 * 2 1 4 4 C 1.46498 * 120.00541 * 269.99852 * 3 2 1 5 5 C 1.50694 * 109.47358 * 270.00295 * 4 3 2 6 6 H 1.08005 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99980 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00054 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00078 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47194 * 90.00079 * 9 7 5 11 11 H 1.48501 * 109.47306 * 210.00172 * 9 7 5 12 12 H 1.48501 * 109.46944 * 329.99740 * 9 7 5 13 13 C 1.34786 * 119.99485 * 90.00290 * 3 2 1 14 14 O 1.21277 * 119.99764 * 179.97438 * 13 3 2 15 15 C 1.50694 * 119.99887 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.47034 * 180.02562 * 15 13 3 17 17 C 1.46904 * 111.00057 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46936 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.47037 * 295.00065 * 18 17 16 20 20 C 1.52999 * 109.46779 * 175.00147 * 18 17 16 21 21 N 1.46496 * 109.46990 * 54.99984 * 18 17 16 22 22 C 1.34774 * 119.99757 * 204.99449 * 21 18 17 23 23 O 1.21282 * 120.00208 * 0.02562 * 22 21 18 24 24 C 1.50703 * 120.00167 * 180.02562 * 22 21 18 25 25 H 1.09007 * 115.55644 * 325.69499 * 24 22 21 26 26 C 1.53069 * 117.49649 * 111.39727 * 24 22 21 27 27 C 1.52995 * 117.50261 * 180.02562 * 24 22 21 28 28 F 1.39905 * 117.50066 * 145.01999 * 27 24 22 29 29 F 1.39897 * 117.49662 * 0.02562 * 27 24 22 30 30 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47221 * 299.99491 * 1 2 3 32 32 H 1.09000 * 109.46911 * 59.99896 * 1 2 3 33 33 H 1.08998 * 109.46703 * 240.00430 * 2 1 3 34 34 H 1.08997 * 109.47206 * 120.00526 * 2 1 3 35 35 H 1.09002 * 109.46718 * 30.00714 * 4 3 2 36 36 H 1.08998 * 109.47053 * 150.00108 * 4 3 2 37 37 H 0.96996 * 119.99981 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.47837 * 60.00014 * 15 13 3 39 39 H 1.08998 * 109.47326 * 299.99789 * 15 13 3 40 40 H 1.00901 * 110.99858 * 303.94748 * 16 15 13 41 41 H 1.09000 * 109.46756 * 59.99814 * 17 16 15 42 42 H 1.08996 * 109.47249 * 299.99838 * 17 16 15 43 43 H 1.09004 * 109.47269 * 299.99776 * 20 18 17 44 44 H 1.08999 * 109.47170 * 60.00125 * 20 18 17 45 45 H 1.09006 * 109.46909 * 180.02562 * 20 18 17 46 46 H 0.97002 * 120.00236 * 25.00471 * 21 18 17 47 47 H 1.09000 * 117.49477 * 0.02562 * 26 24 22 48 48 H 1.08999 * 117.51921 * 214.96567 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 3.6858 1.8352 -1.7037 6 1 4.3427 1.2304 -1.0962 7 6 4.1490 2.3900 -2.8778 8 7 5.3910 2.1829 -3.2578 9 14 3.0128 3.4355 -3.9290 10 1 3.1163 4.8558 -3.5078 11 1 3.4056 3.3125 -5.3558 12 1 1.6130 2.9695 -3.7590 13 6 2.2430 2.0165 1.1673 14 8 2.6476 3.1598 1.1674 15 6 1.9913 1.3062 2.4723 16 7 2.3090 2.2063 3.5890 17 6 2.0745 1.5463 4.8803 18 6 2.4163 2.5125 6.0163 19 1 3.4832 2.7347 5.9956 20 6 2.0549 1.8709 7.3575 21 7 1.6556 3.7530 5.8477 22 6 2.1175 4.9037 6.3758 23 8 3.1631 4.9123 6.9903 24 6 1.3348 6.1799 6.2029 25 1 0.8006 6.2795 5.2580 26 6 0.6849 6.7848 7.4498 27 6 1.9122 7.4527 6.8253 28 9 1.7137 8.6552 6.1383 29 9 3.1267 7.3429 7.5110 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5817 1.6879 -2.0283 36 1 2.0955 3.1412 -1.1382 37 1 5.7168 2.5729 -4.0840 38 1 2.6211 0.4184 2.5303 39 1 0.9432 1.0124 2.5299 40 1 3.2574 2.5443 3.5223 41 1 2.7050 0.6603 4.9552 42 1 1.0270 1.2541 4.9541 43 1 0.9880 1.6486 7.3782 44 1 2.6209 0.9478 7.4829 45 1 2.2980 2.5594 8.1668 46 1 0.8195 3.7463 5.3560 47 1 0.8241 6.2598 8.3948 48 1 -0.2768 7.2825 7.3253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401683526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:32 Heat of formation + Delta-G solvation = -160.457452 kcal Electronic energy + Delta-G solvation = -30799.879655 eV Core-core repulsion = 26139.845388 eV Total energy + Delta-G solvation = -4660.034267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.69569 -48.38157 -41.04127 -40.70338 -38.09512 -36.96633 -36.53050 -35.34502 -34.79157 -32.17280 -31.76900 -30.04629 -28.20704 -26.05547 -25.16788 -24.32573 -23.58265 -23.44426 -22.13082 -21.37997 -19.89919 -19.33847 -19.11227 -18.28806 -17.84425 -17.64922 -17.36350 -17.08062 -16.88313 -16.44881 -16.11612 -16.08280 -15.44130 -15.12947 -15.07698 -15.02201 -14.76674 -14.67656 -14.65426 -14.49738 -14.42836 -14.23694 -13.76736 -13.49827 -13.39787 -13.37913 -13.21867 -13.07107 -12.89365 -12.74179 -12.52117 -12.33915 -12.27133 -12.03929 -11.89720 -11.82558 -11.75141 -11.22546 -10.89618 -10.84642 -10.61100 -10.06053 -9.43466 -9.36622 -8.35688 -6.40495 1.24613 1.30858 1.35493 1.43450 1.85054 1.85840 2.08609 2.24797 2.29600 2.34495 2.99097 3.15221 3.22701 3.39719 3.54584 3.72116 3.80697 3.94453 4.11335 4.19993 4.31561 4.41655 4.42849 4.48405 4.50021 4.58624 4.64718 4.67616 4.75481 4.77250 4.80239 4.81851 4.92680 5.04038 5.04854 5.05819 5.29345 5.42279 5.47483 5.52454 5.66694 5.90905 6.18899 6.23839 6.54605 6.61058 6.77726 7.21203 7.22353 7.49043 8.81377 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.002452 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.410460 B =11416.924096 C =12980.684760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.534 4.534 6 H 0.027 0.973 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.493 3.507 14 O -0.586 6.586 15 C 0.059 3.941 16 N -0.685 5.685 17 C 0.057 3.943 18 C 0.143 3.857 19 H 0.056 0.944 20 C -0.151 4.151 21 N -0.687 5.687 22 C 0.535 3.465 23 O -0.575 6.575 24 C -0.195 4.195 25 H 0.171 0.829 26 C -0.102 4.102 27 C 0.185 3.815 28 F -0.166 7.166 29 F -0.167 7.167 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.268 0.732 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.337 0.663 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.418 0.582 47 H 0.135 0.865 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.754 -2.733 22.842 30.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.104 3.896 5 C -0.573 4.573 6 H 0.046 0.954 7 C -0.189 4.189 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.282 3.718 14 O -0.466 6.466 15 C -0.073 4.073 16 N -0.316 5.316 17 C -0.072 4.072 18 C 0.038 3.962 19 H 0.074 0.926 20 C -0.210 4.210 21 N -0.338 5.338 22 C 0.321 3.679 23 O -0.455 6.455 24 C -0.217 4.217 25 H 0.189 0.811 26 C -0.140 4.140 27 C 0.148 3.852 28 F -0.146 7.146 29 F -0.147 7.147 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.079 0.921 42 H 0.128 0.872 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.255 0.745 47 H 0.153 0.847 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.277 -1.830 23.102 30.144 hybrid contribution 1.466 0.328 -1.357 2.024 sum -17.811 -1.501 21.745 28.149 Atomic orbital electron populations 1.22152 0.93769 1.03608 1.02203 1.21778 0.95759 0.81041 1.03849 1.48071 1.64420 1.15190 1.05743 1.19232 0.94525 0.92951 0.82862 1.21585 0.97209 1.31912 1.06591 0.95449 1.25872 0.96708 0.97236 0.99057 1.70054 1.17488 1.46691 1.24498 0.85714 0.80547 0.78926 0.77753 1.20386 1.20029 1.15939 1.21376 0.77062 0.86698 0.86651 1.90655 1.47341 1.20667 1.87903 1.21836 1.04794 0.93834 0.86830 1.60163 1.32074 1.38107 1.01285 1.22387 1.03992 0.94775 0.86075 1.21017 0.95876 0.83711 0.95629 0.92556 1.22051 1.03417 1.00830 0.94710 1.45657 1.26591 1.06717 1.54826 1.19610 0.84774 0.84886 0.78623 1.90773 1.24863 1.86596 1.43258 1.23737 1.03189 0.90617 1.04151 0.81144 1.24480 0.96150 0.96855 0.96502 1.20113 0.85133 0.82023 0.97917 1.93029 1.94755 1.46764 1.80096 1.93056 1.46515 1.95827 1.79340 0.88809 0.91483 0.93820 0.91422 0.88425 0.93534 0.96661 0.92317 0.90818 0.84939 0.84547 0.92064 0.87244 0.89999 0.90210 0.93717 0.74482 0.84684 0.81159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.24 71.98 0.74 -2.27 16 2 C 0.10 2.58 5.93 86.38 0.51 3.10 16 3 N -0.60 -23.06 2.46 -826.16 -2.03 -25.09 16 4 C 0.23 10.92 4.23 85.63 0.36 11.28 16 5 C -0.53 -31.46 9.94 25.60 0.25 -31.20 16 6 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 9 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 13 C 0.49 18.61 7.71 87.65 0.68 19.29 16 14 O -0.59 -28.65 15.78 -3.02 -0.05 -28.70 16 15 C 0.06 1.35 4.72 85.55 0.40 1.75 16 16 N -0.68 -15.44 5.85 -517.93 -3.03 -18.47 16 17 C 0.06 0.76 5.24 86.30 0.45 1.21 16 18 C 0.14 2.35 2.81 44.99 0.13 2.48 16 19 H 0.06 1.32 7.58 -2.39 -0.02 1.30 16 20 C -0.15 -1.83 9.48 71.98 0.68 -1.15 16 21 N -0.69 -11.53 4.80 -442.54 -2.12 -13.65 16 22 C 0.54 11.99 7.58 87.66 0.66 12.66 16 23 O -0.58 -18.27 14.81 -3.03 -0.04 -18.31 16 24 C -0.20 -3.20 6.17 -11.52 -0.07 -3.28 16 25 H 0.17 2.05 8.14 -2.38 -0.02 2.03 16 26 C -0.10 -1.04 10.21 30.63 0.31 -0.72 16 27 C 0.19 3.91 5.19 30.61 0.16 4.07 16 28 F -0.17 -3.78 17.60 44.97 0.79 -2.99 16 29 F -0.17 -4.87 15.71 44.97 0.71 -4.16 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.08 7.22 -2.39 -0.02 1.07 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 34 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 35 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 36 H 0.02 0.80 6.85 -2.39 -0.02 0.78 16 37 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.07 1.46 7.40 -2.39 -0.02 1.45 16 39 H 0.13 2.09 7.18 -2.39 -0.02 2.07 16 40 H 0.34 9.79 8.43 -89.69 -0.76 9.04 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.04 0.73 8.14 -2.38 -0.02 0.72 16 46 H 0.42 5.10 8.60 -92.71 -0.80 4.30 16 47 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.17 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -89.48 406.81 1.53 -87.96 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.62 Total: 18.71 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 5.73 Total: 18.21 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -6.88 Total: -117.37 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.09 Total: -47.01 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 1.50 Total: -7.15 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -89.48 1.53 -87.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401683526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.500 kcal (2) G-P(sol) polarization free energy of solvation -89.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds