Wall clock time and date at job start Wed Apr 1 2020 04:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47377 * 2 1 4 4 C 1.46505 * 119.99899 * 90.00269 * 3 2 1 5 5 C 1.50703 * 109.47064 * 270.00279 * 4 3 2 6 6 H 1.07996 * 119.99751 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47093 * 90.00088 * 9 7 5 11 11 H 1.48500 * 109.47049 * 210.00797 * 9 7 5 12 12 H 1.48504 * 109.47189 * 330.00185 * 9 7 5 13 13 C 1.34773 * 120.00646 * 270.00434 * 3 2 1 14 14 O 1.21282 * 120.00692 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99759 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47303 * 180.02562 * 15 13 3 17 17 C 1.47474 * 111.00078 * 74.02890 * 16 15 13 18 18 C 1.53503 * 87.93440 * 138.70405 * 17 16 15 19 19 C 1.47478 * 110.99900 * 169.99732 * 16 15 13 20 20 H 1.09001 * 113.47595 * 336.12265 * 19 16 15 21 21 C 1.53008 * 113.47648 * 106.52769 * 19 16 15 22 22 N 1.46501 * 109.46826 * 304.99734 * 21 19 16 23 23 C 1.34778 * 119.99686 * 179.97438 * 22 21 19 24 24 O 1.21283 * 120.00203 * 0.02562 * 23 22 21 25 25 C 1.50697 * 119.99794 * 180.02562 * 23 22 21 26 26 C 1.53007 * 109.46970 * 155.00013 * 25 23 22 27 27 F 1.39901 * 109.47273 * 274.99864 * 25 23 22 28 28 F 1.39895 * 109.47552 * 34.99917 * 25 23 22 29 29 H 1.09005 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46817 * 299.99710 * 1 2 3 31 31 H 1.08996 * 109.47652 * 59.99460 * 1 2 3 32 32 H 1.09006 * 109.46817 * 240.00290 * 2 1 3 33 33 H 1.08996 * 109.47652 * 120.00540 * 2 1 3 34 34 H 1.09002 * 109.47068 * 30.00248 * 4 3 2 35 35 H 1.09001 * 109.47372 * 150.00336 * 4 3 2 36 36 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.46606 * 299.99889 * 15 13 3 38 38 H 1.08999 * 109.47462 * 59.99201 * 15 13 3 39 39 H 1.09009 * 113.47193 * 253.47095 * 17 16 15 40 40 H 1.08994 * 113.48094 * 23.93250 * 17 16 15 41 41 H 1.08997 * 114.17302 * 220.32497 * 18 17 16 42 42 H 1.09007 * 114.17259 * 87.61769 * 18 17 16 43 43 H 1.09000 * 109.46918 * 64.99725 * 21 19 16 44 44 H 1.08998 * 109.46897 * 185.00217 * 21 19 16 45 45 H 0.96997 * 120.00235 * 0.02562 * 22 21 19 46 46 H 1.08991 * 109.47126 * 60.00189 * 26 25 23 47 47 H 1.09008 * 109.47137 * 179.97438 * 26 25 23 48 48 H 1.09001 * 109.47106 * 299.99584 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0068 2.7821 1.7039 6 1 0.1160 2.7252 1.0960 7 6 0.9954 3.5055 2.8776 8 7 -0.1007 4.1250 3.2576 9 14 2.5364 3.6044 3.9288 10 1 3.3491 4.7734 3.5070 11 1 2.1534 3.7565 5.3555 12 1 3.3316 2.3617 3.7596 13 6 2.2429 2.0166 -1.1671 14 8 2.6468 3.1602 -1.1671 15 6 1.9911 1.3065 -2.4723 16 7 2.3100 2.2063 -3.5888 17 6 3.7685 2.3592 -3.7444 18 6 3.5596 2.2735 -5.2628 19 6 2.3058 1.4788 -4.8717 20 1 2.4844 0.4089 -4.7647 21 6 1.0891 1.7910 -5.7454 22 7 -0.1367 1.5356 -4.9848 23 6 -1.3397 1.7431 -5.5559 24 8 -1.4075 2.1408 -6.6997 25 6 -2.6006 1.4809 -4.7733 26 6 -3.7389 2.3319 -5.3402 27 9 -2.9373 0.1266 -4.8715 28 9 -2.3937 1.8138 -3.4304 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.5507 1.3450 2.0284 35 1 3.0645 2.7984 1.1385 36 1 -0.1086 4.6342 4.0831 37 1 2.6210 0.4187 -2.5303 38 1 0.9431 1.0126 -2.5298 39 1 4.1415 3.3278 -3.4114 40 1 4.3386 1.5245 -3.3368 41 1 4.3152 1.6865 -5.7849 42 1 3.3503 3.2313 -5.7393 43 1 1.1177 2.8378 -6.0475 44 1 1.1057 1.1564 -6.6314 45 1 -0.0825 1.2178 -4.0699 46 1 -3.9001 2.0724 -6.3865 47 1 -4.6510 2.1419 -4.7745 48 1 -3.4765 3.3871 -5.2637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401886808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:17 Heat of formation + Delta-G solvation = -120.683333 kcal Electronic energy + Delta-G solvation = -32488.079785 eV Core-core repulsion = 27829.770253 eV Total energy + Delta-G solvation = -4658.309532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.39792 -47.38954 -40.91146 -39.71182 -38.69707 -35.42233 -35.00956 -32.73578 -31.86181 -31.35922 -30.17871 -28.99070 -27.90184 -25.18795 -25.13890 -23.02632 -22.80785 -22.06245 -21.03338 -20.04962 -18.85124 -18.52840 -17.99867 -17.10923 -16.92572 -16.72325 -16.38913 -15.95786 -15.67420 -15.37827 -15.09834 -14.92759 -14.42060 -14.25336 -14.02047 -13.87200 -13.69509 -13.59534 -13.38079 -13.20031 -13.00946 -12.84222 -12.68480 -12.49198 -12.34452 -12.21027 -12.15928 -12.07413 -11.77867 -11.62524 -11.37795 -11.15665 -11.01201 -10.81977 -10.64574 -10.47094 -10.23130 -10.14007 -9.48821 -9.47926 -9.21399 -8.82227 -8.57667 -7.75340 -6.07293 -4.05614 1.87861 2.33856 3.23812 3.28400 3.34021 3.36014 3.42051 3.55676 3.70050 3.93191 4.18319 4.25818 4.29894 4.39815 4.44147 4.68289 4.82523 5.00668 5.04960 5.09433 5.15919 5.16362 5.26619 5.28593 5.34288 5.36491 5.50370 5.56446 5.59558 5.67260 5.74302 5.75187 5.86142 5.98894 6.06897 6.18506 6.26431 6.63246 6.80303 6.81667 6.91483 6.93786 7.32704 7.54543 7.61613 8.20940 8.48069 8.92957 8.98946 9.52908 11.05938 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.003505 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.450711 B = 7987.092368 C = 9520.674423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.525 4.525 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.520 6.520 15 C -0.001 4.001 16 N -0.441 5.441 17 C 0.008 3.992 18 C -0.132 4.132 19 C 0.004 3.996 20 H 0.086 0.914 21 C 0.137 3.863 22 N -0.701 5.701 23 C 0.487 3.513 24 O -0.508 6.508 25 C 0.279 3.721 26 C -0.182 4.182 27 F -0.184 7.184 28 F -0.181 7.181 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.407 0.593 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -11.190 -18.705 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.012 4.012 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.564 4.564 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.296 3.704 14 O -0.395 6.395 15 C -0.133 4.133 16 N -0.163 5.163 17 C -0.120 4.120 18 C -0.170 4.170 19 C -0.106 4.106 20 H 0.104 0.896 21 C 0.014 3.986 22 N -0.353 5.353 23 C 0.268 3.732 24 O -0.383 6.383 25 C 0.239 3.761 26 C -0.240 4.240 27 F -0.165 7.165 28 F -0.162 7.162 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.244 0.756 46 H 0.118 0.882 47 H 0.110 0.890 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.192 -9.622 -19.185 21.496 hybrid contribution 0.971 -1.057 1.480 2.062 sum 2.163 -10.680 -17.706 20.790 Atomic orbital electron populations 1.22245 0.95789 1.01028 1.03943 1.21418 0.95012 0.83278 1.01542 1.47968 1.64474 1.13328 1.07001 1.19660 0.98066 0.92702 0.79857 1.21339 0.97367 1.30618 1.07032 0.90470 1.24856 0.95914 0.94829 0.97393 1.69896 1.27173 1.32909 1.23551 0.86883 0.83945 0.79167 0.79840 1.19990 1.21131 1.19196 1.19923 0.79129 0.86872 0.84479 1.90686 1.45188 1.16884 1.86775 1.22776 1.02592 0.95295 0.92648 1.68948 1.15563 1.32627 0.99193 1.23659 0.89834 1.03708 0.94815 1.23183 0.95789 1.00995 0.97056 1.23839 0.95501 0.98407 0.92873 0.89598 1.21508 0.80936 1.02606 0.93595 1.45965 1.05359 1.65969 1.18031 1.20737 0.85140 0.79518 0.87817 1.90765 1.86407 1.44410 1.16723 1.21368 0.95797 0.79542 0.79396 1.22640 0.96274 1.01002 1.04081 1.93082 1.93339 1.34059 1.96018 1.93142 1.95869 1.92102 1.35133 0.92717 0.90003 0.93245 0.92202 0.90626 0.95373 0.94723 0.92618 0.91566 0.88793 0.88512 0.91436 0.90133 0.88297 0.89951 0.90441 0.75605 0.88194 0.88961 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 1.65 5.97 -4.05 -0.02 1.62 16 3 N -0.59 -11.70 2.46 -175.06 -0.43 -12.13 16 4 C 0.22 5.20 4.27 -5.19 -0.02 5.18 16 5 C -0.53 -14.81 9.48 -34.44 -0.33 -15.14 16 6 H 0.08 2.39 7.67 -52.49 -0.40 1.99 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 9 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 C 0.51 9.94 7.51 -10.98 -0.08 9.86 16 14 O -0.52 -12.44 15.34 5.56 0.09 -12.35 16 15 C 0.00 -0.02 3.62 -4.97 -0.02 -0.04 16 16 N -0.44 -5.76 5.63 -237.99 -1.34 -7.10 16 17 C 0.01 0.10 6.71 -7.57 -0.05 0.05 16 18 C -0.13 -1.08 8.00 -26.21 -0.21 -1.29 16 19 C 0.00 0.04 3.25 -71.45 -0.23 -0.20 16 20 H 0.09 0.63 7.77 -51.93 -0.40 0.23 16 21 C 0.14 1.34 5.82 -4.04 -0.02 1.31 16 22 N -0.70 -7.95 5.40 -60.29 -0.33 -8.28 16 23 C 0.49 6.05 7.23 -10.99 -0.08 5.97 16 24 O -0.51 -7.18 16.10 5.55 0.09 -7.10 16 25 C 0.28 3.21 2.47 -27.88 -0.07 3.14 16 26 C -0.18 -1.66 8.92 37.16 0.33 -1.33 16 27 F -0.18 -2.15 17.05 2.25 0.04 -2.11 16 28 F -0.18 -2.44 16.51 2.25 0.04 -2.40 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.55 7.26 -51.93 -0.38 1.17 16 31 H 0.05 0.75 7.22 -51.93 -0.37 0.37 16 32 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 33 H 0.08 1.06 7.89 -51.93 -0.41 0.65 16 34 H 0.03 0.64 6.95 -51.93 -0.36 0.28 16 35 H 0.03 0.89 6.85 -51.93 -0.36 0.54 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.07 0.71 6.82 -51.93 -0.35 0.36 16 38 H 0.09 1.20 5.37 -51.93 -0.28 0.92 16 39 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 40 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.82 7.94 -51.93 -0.41 0.41 16 43 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.41 4.60 5.78 -40.82 -0.24 4.36 16 46 H 0.10 0.84 7.87 -51.93 -0.41 0.43 16 47 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -35.50 394.17 -7.54 -43.05 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.22 Total: 3.56 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.52 Total: 8.91 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -1.32 Total: -54.30 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.45 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.08 Total: -4.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.50 -7.54 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401886808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.636 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds