Wall clock time and date at job start Wed Apr 1 2020 04:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47377 * 2 1 4 4 C 1.46505 * 119.99899 * 90.00269 * 3 2 1 5 5 C 1.50703 * 109.47064 * 270.00279 * 4 3 2 6 6 H 1.07996 * 119.99751 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99923 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47093 * 90.00088 * 9 7 5 11 11 H 1.48500 * 109.47049 * 210.00797 * 9 7 5 12 12 H 1.48504 * 109.47189 * 330.00185 * 9 7 5 13 13 C 1.34773 * 120.00646 * 270.00434 * 3 2 1 14 14 O 1.21282 * 120.00692 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99759 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47303 * 180.02562 * 15 13 3 17 17 C 1.47474 * 111.00078 * 74.02890 * 16 15 13 18 18 C 1.53503 * 87.93440 * 138.70405 * 17 16 15 19 19 C 1.47478 * 110.99900 * 169.99732 * 16 15 13 20 20 H 1.09001 * 113.47595 * 336.12265 * 19 16 15 21 21 C 1.53008 * 113.47648 * 106.52769 * 19 16 15 22 22 N 1.46501 * 109.46826 * 304.99734 * 21 19 16 23 23 C 1.34778 * 119.99686 * 179.97438 * 22 21 19 24 24 O 1.21283 * 120.00203 * 0.02562 * 23 22 21 25 25 C 1.50697 * 119.99794 * 180.02562 * 23 22 21 26 26 C 1.53007 * 109.46970 * 155.00013 * 25 23 22 27 27 F 1.39901 * 109.47273 * 274.99864 * 25 23 22 28 28 F 1.39895 * 109.47552 * 34.99917 * 25 23 22 29 29 H 1.09005 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46817 * 299.99710 * 1 2 3 31 31 H 1.08996 * 109.47652 * 59.99460 * 1 2 3 32 32 H 1.09006 * 109.46817 * 240.00290 * 2 1 3 33 33 H 1.08996 * 109.47652 * 120.00540 * 2 1 3 34 34 H 1.09002 * 109.47068 * 30.00248 * 4 3 2 35 35 H 1.09001 * 109.47372 * 150.00336 * 4 3 2 36 36 H 0.97000 * 119.99684 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.46606 * 299.99889 * 15 13 3 38 38 H 1.08999 * 109.47462 * 59.99201 * 15 13 3 39 39 H 1.09009 * 113.47193 * 253.47095 * 17 16 15 40 40 H 1.08994 * 113.48094 * 23.93250 * 17 16 15 41 41 H 1.08997 * 114.17302 * 220.32497 * 18 17 16 42 42 H 1.09007 * 114.17259 * 87.61769 * 18 17 16 43 43 H 1.09000 * 109.46918 * 64.99725 * 21 19 16 44 44 H 1.08998 * 109.46897 * 185.00217 * 21 19 16 45 45 H 0.96997 * 120.00235 * 0.02562 * 22 21 19 46 46 H 1.08991 * 109.47126 * 60.00189 * 26 25 23 47 47 H 1.09008 * 109.47137 * 179.97438 * 26 25 23 48 48 H 1.09001 * 109.47106 * 299.99584 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0068 2.7821 1.7039 6 1 0.1160 2.7252 1.0960 7 6 0.9954 3.5055 2.8776 8 7 -0.1007 4.1250 3.2576 9 14 2.5364 3.6044 3.9288 10 1 3.3491 4.7734 3.5070 11 1 2.1534 3.7565 5.3555 12 1 3.3316 2.3617 3.7596 13 6 2.2429 2.0166 -1.1671 14 8 2.6468 3.1602 -1.1671 15 6 1.9911 1.3065 -2.4723 16 7 2.3100 2.2063 -3.5888 17 6 3.7685 2.3592 -3.7444 18 6 3.5596 2.2735 -5.2628 19 6 2.3058 1.4788 -4.8717 20 1 2.4844 0.4089 -4.7647 21 6 1.0891 1.7910 -5.7454 22 7 -0.1367 1.5356 -4.9848 23 6 -1.3397 1.7431 -5.5559 24 8 -1.4075 2.1408 -6.6997 25 6 -2.6006 1.4809 -4.7733 26 6 -3.7389 2.3319 -5.3402 27 9 -2.9373 0.1266 -4.8715 28 9 -2.3937 1.8138 -3.4304 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.5507 1.3450 2.0284 35 1 3.0645 2.7984 1.1385 36 1 -0.1086 4.6342 4.0831 37 1 2.6210 0.4187 -2.5303 38 1 0.9431 1.0126 -2.5298 39 1 4.1415 3.3278 -3.4114 40 1 4.3386 1.5245 -3.3368 41 1 4.3152 1.6865 -5.7849 42 1 3.3503 3.2313 -5.7393 43 1 1.1177 2.8378 -6.0475 44 1 1.1057 1.1564 -6.6314 45 1 -0.0825 1.2178 -4.0699 46 1 -3.9001 2.0724 -6.3865 47 1 -4.6510 2.1419 -4.7745 48 1 -3.4765 3.3871 -5.2637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401886808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:13 Heat of formation + Delta-G solvation = -148.601486 kcal Electronic energy + Delta-G solvation = -32489.290407 eV Core-core repulsion = 27829.770253 eV Total energy + Delta-G solvation = -4659.520154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.35292 -48.35435 -41.85835 -40.76437 -40.02880 -36.97119 -35.94775 -34.82042 -32.74888 -32.52181 -31.60117 -29.93498 -29.52123 -26.45369 -25.98251 -24.18520 -23.87611 -23.76335 -21.96632 -20.83435 -19.98261 -19.74141 -19.07416 -18.94178 -18.12066 -17.85968 -17.58221 -16.92388 -16.77965 -16.65768 -16.30057 -16.08105 -15.76588 -15.41157 -15.19512 -15.01038 -14.66498 -14.66239 -14.58110 -14.53304 -14.28473 -14.20665 -13.71070 -13.59585 -13.50096 -13.40918 -13.21232 -13.11319 -13.04552 -12.91144 -12.57285 -12.45049 -12.38777 -12.01818 -11.98026 -11.90881 -11.73258 -11.60117 -11.16392 -10.80932 -10.61348 -10.37270 -9.83578 -9.40653 -8.31274 -6.35014 0.91835 1.31388 1.35768 1.43466 1.45856 1.78383 2.22385 2.31484 2.56410 2.83193 2.98167 3.02920 3.33076 3.41414 3.42995 3.61707 3.74005 3.98308 4.05416 4.13639 4.26089 4.28408 4.34539 4.44852 4.45670 4.52174 4.55353 4.60814 4.77170 4.77997 4.84483 4.88783 4.92958 4.94789 4.98794 5.01845 5.05926 5.20334 5.33661 5.47257 5.51215 5.67726 5.96062 6.00387 6.27771 6.62082 6.67045 6.73533 7.24878 7.46611 8.85656 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.003505 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.450711 B = 7987.092368 C = 9520.674423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.602 5.602 4 C 0.225 3.775 5 C -0.526 4.526 6 H 0.031 0.969 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.237 1.237 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.012 3.988 16 N -0.480 5.480 17 C 0.002 3.998 18 C -0.113 4.113 19 C 0.017 3.983 20 H 0.118 0.882 21 C 0.134 3.866 22 N -0.699 5.699 23 C 0.484 3.516 24 O -0.529 6.529 25 C 0.275 3.725 26 C -0.181 4.181 27 F -0.184 7.184 28 F -0.196 7.196 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.266 0.734 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.408 0.592 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 -14.242 -20.050 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.103 3.897 5 C -0.565 4.565 6 H 0.049 0.951 7 C -0.189 4.189 8 N -0.588 5.588 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.203 1.203 12 H -0.160 1.160 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.119 4.119 16 N -0.203 5.203 17 C -0.127 4.127 18 C -0.151 4.151 19 C -0.093 4.093 20 H 0.136 0.864 21 C 0.011 3.989 22 N -0.350 5.350 23 C 0.265 3.735 24 O -0.406 6.406 25 C 0.236 3.764 26 C -0.239 4.239 27 F -0.165 7.165 28 F -0.177 7.177 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.244 0.756 46 H 0.127 0.873 47 H 0.126 0.874 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.974 -12.740 -20.548 24.359 hybrid contribution 0.335 -0.092 1.840 1.872 sum 3.309 -12.831 -18.708 22.926 Atomic orbital electron populations 1.22171 0.96432 1.02615 1.01197 1.21793 0.94403 0.80886 1.04615 1.48086 1.64461 1.15100 1.05764 1.19307 0.94994 0.92825 0.82590 1.21569 0.97619 1.30885 1.06383 0.95102 1.25843 0.99535 0.94405 0.99102 1.70061 1.29889 1.34387 1.24475 0.85751 0.79480 0.80117 0.77776 1.20511 1.20264 1.15966 1.21051 0.77504 0.86510 0.86214 1.90653 1.47607 1.19595 1.87787 1.22709 1.03938 0.95833 0.89397 1.68927 1.16722 1.34195 1.00500 1.23690 0.89131 1.02498 0.97338 1.23127 0.96006 1.01175 0.94841 1.23908 0.95189 0.99849 0.90311 0.86432 1.21654 0.80634 1.02252 0.94345 1.46054 1.05636 1.65202 1.18076 1.20879 0.85667 0.79309 0.87640 1.90751 1.86727 1.45552 1.17535 1.21564 0.96370 0.79855 0.78618 1.22698 0.96002 1.00494 1.04699 1.93076 1.93330 1.34138 1.95956 1.93115 1.96008 1.92254 1.36314 0.88852 0.94975 0.93780 0.87161 0.89445 0.93347 0.96640 0.92489 0.87392 0.87880 0.92058 0.89886 0.86783 0.88949 0.91451 0.88476 0.75569 0.87345 0.87421 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.83 10.24 71.98 0.74 -4.09 16 2 C 0.10 2.81 5.97 86.38 0.52 3.33 16 3 N -0.60 -23.25 2.46 -826.15 -2.03 -25.28 16 4 C 0.23 10.81 4.27 85.63 0.37 11.17 16 5 C -0.53 -30.86 9.48 25.60 0.24 -30.62 16 6 H 0.03 2.04 7.67 -2.91 -0.02 2.01 16 7 C 0.01 0.51 5.47 84.65 0.46 0.97 16 8 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 9 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 13 C 0.50 19.26 7.51 87.66 0.66 19.92 16 14 O -0.58 -28.53 15.34 -3.04 -0.05 -28.58 16 15 C 0.01 0.31 3.62 85.56 0.31 0.62 16 16 N -0.48 -11.77 5.63 -906.85 -5.10 -16.87 16 17 C 0.00 0.04 6.71 83.56 0.56 0.60 16 18 C -0.11 -1.53 8.00 30.93 0.25 -1.29 16 19 C 0.02 0.25 3.25 42.18 0.14 0.38 16 20 H 0.12 1.07 7.77 -2.39 -0.02 1.05 16 21 C 0.13 2.31 5.82 86.38 0.50 2.82 16 22 N -0.70 -14.78 5.40 -463.05 -2.50 -17.27 16 23 C 0.48 11.60 7.23 87.66 0.63 12.23 16 24 O -0.53 -14.54 16.10 -3.04 -0.05 -14.59 16 25 C 0.28 6.17 2.47 29.85 0.07 6.25 16 26 C -0.18 -3.18 8.92 71.98 0.64 -2.54 16 27 F -0.18 -4.08 17.05 44.97 0.77 -3.31 16 28 F -0.20 -5.27 16.51 44.97 0.74 -4.53 16 29 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.03 1.24 7.26 -2.38 -0.02 1.22 16 31 H 0.04 1.30 7.22 -2.39 -0.02 1.28 16 32 H 0.11 1.89 6.44 -2.38 -0.02 1.87 16 33 H 0.09 2.16 7.89 -2.39 -0.02 2.14 16 34 H 0.05 2.12 6.95 -2.39 -0.02 2.11 16 35 H 0.02 0.81 6.85 -2.39 -0.02 0.79 16 36 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.11 1.75 6.82 -2.38 -0.02 1.73 16 38 H 0.10 2.36 5.37 -2.39 -0.01 2.35 16 39 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.08 1.49 7.70 -2.39 -0.02 1.47 16 41 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 1.39 7.94 -2.38 -0.02 1.37 16 43 H 0.07 1.38 7.88 -2.39 -0.02 1.36 16 44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.41 8.52 5.78 -92.71 -0.54 7.99 16 46 H 0.11 1.71 7.87 -2.39 -0.02 1.69 16 47 H 0.11 1.52 8.14 -2.38 -0.02 1.51 16 48 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -84.25 394.17 0.45 -83.80 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.40 Total: 20.59 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.09 Total: 19.76 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -9.33 Total: -119.80 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.10 Total: -43.17 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 1.51 Total: -7.84 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -84.25 0.45 -83.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401886808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.800 kcal (2) G-P(sol) polarization free energy of solvation -84.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds