Wall clock time and date at job start Wed Apr 1 2020 04:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47382 * 2 1 4 4 C 1.46502 * 120.00116 * 270.00745 * 3 2 1 5 5 C 1.50705 * 109.46690 * 269.99569 * 4 3 2 6 6 H 1.08003 * 120.00217 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99920 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99522 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00131 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47024 * 89.99953 * 9 7 5 11 11 H 1.48497 * 109.47594 * 209.99949 * 9 7 5 12 12 H 1.48506 * 109.47108 * 330.00365 * 9 7 5 13 13 C 1.34778 * 120.00122 * 90.00127 * 3 2 1 14 14 O 1.21275 * 120.00255 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99719 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47034 * 179.97438 * 15 13 3 17 17 C 1.47475 * 111.00434 * 265.97659 * 16 15 13 18 18 C 1.53513 * 87.93182 * 221.29779 * 17 16 15 19 19 C 1.47478 * 110.99981 * 170.00138 * 16 15 13 20 20 H 1.08999 * 113.47613 * 23.88278 * 19 16 15 21 21 C 1.53001 * 113.47965 * 253.47757 * 19 16 15 22 22 N 1.46493 * 109.47084 * 54.99648 * 21 19 16 23 23 C 1.34784 * 119.99864 * 180.02562 * 22 21 19 24 24 O 1.21283 * 119.99649 * 359.72839 * 23 22 21 25 25 C 1.50694 * 119.99988 * 179.72721 * 23 22 21 26 26 C 1.53000 * 109.47158 * 154.99915 * 25 23 22 27 27 F 1.39903 * 109.47384 * 274.99986 * 25 23 22 28 28 F 1.39900 * 109.47513 * 35.00046 * 25 23 22 29 29 H 1.09000 * 109.47369 * 59.99539 * 1 2 3 30 30 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47079 * 299.99508 * 1 2 3 32 32 H 1.09001 * 109.47410 * 240.00361 * 2 1 3 33 33 H 1.09001 * 109.47716 * 119.99767 * 2 1 3 34 34 H 1.08998 * 109.47223 * 29.99353 * 4 3 2 35 35 H 1.08993 * 109.47102 * 149.99678 * 4 3 2 36 36 H 0.97004 * 119.99455 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47016 * 60.00478 * 15 13 3 38 38 H 1.08996 * 109.47390 * 300.00430 * 15 13 3 39 39 H 1.09005 * 113.47460 * 336.06369 * 17 16 15 40 40 H 1.08997 * 113.47951 * 106.46779 * 17 16 15 41 41 H 1.08999 * 114.16615 * 272.37645 * 18 17 16 42 42 H 1.09005 * 114.16949 * 139.67101 * 18 17 16 43 43 H 1.09007 * 109.46593 * 294.99905 * 21 19 16 44 44 H 1.09006 * 109.47216 * 175.00363 * 21 19 16 45 45 H 0.97000 * 120.00740 * 359.72857 * 22 21 19 46 46 H 1.09007 * 109.46950 * 60.00086 * 26 25 23 47 47 H 1.08998 * 109.47209 * 179.97438 * 26 25 23 48 48 H 1.08996 * 109.47153 * 300.00546 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9136 2.0977 -3.4165 10 1 5.9774 0.8770 -4.2598 11 1 6.3926 3.2654 -4.1989 12 1 6.7735 1.9176 -2.2192 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3102 2.2061 3.5889 17 6 3.6949 2.0018 4.0534 18 6 3.1720 2.1271 5.4913 19 6 1.8554 1.6383 4.8717 20 1 1.7585 0.5527 4.8560 21 6 0.6179 2.3344 5.4418 22 7 -0.4541 2.3197 4.4435 23 6 -1.6464 2.8809 4.7267 24 8 -1.8333 3.3936 5.8098 25 6 -2.7471 2.8713 3.6975 26 6 -4.1029 2.9680 4.3999 27 9 -2.5894 3.9621 2.8358 28 9 -2.6870 1.6831 2.9614 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1383 36 1 3.6752 3.5172 -4.4435 37 1 2.6211 0.4186 2.5302 38 1 0.9432 1.0126 2.5298 39 1 4.0899 1.0131 3.8196 40 1 4.3727 2.8053 3.7652 41 1 3.1364 3.1502 5.8655 42 1 3.6229 1.4252 6.1929 43 1 0.8652 3.3656 5.6944 44 1 0.2868 1.8101 6.3384 45 1 -0.3045 1.9100 3.5771 46 1 -4.1498 3.8938 4.9734 47 1 -4.8990 2.9615 3.6554 48 1 -4.2257 2.1182 5.0712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401886816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:32 Heat of formation + Delta-G solvation = -125.172149 kcal Electronic energy + Delta-G solvation = -32417.909663 eV Core-core repulsion = 27759.405481 eV Total energy + Delta-G solvation = -4658.504182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.42401 -47.42108 -40.85938 -39.69026 -38.58945 -35.26909 -35.02239 -32.86297 -31.92145 -31.27475 -30.08140 -28.99222 -27.34689 -25.17380 -25.06680 -23.07720 -22.98942 -22.26069 -21.05354 -20.05819 -18.86051 -18.42212 -18.02229 -17.10256 -16.67330 -16.49168 -16.27762 -16.01286 -15.57573 -15.36443 -15.18640 -14.91269 -14.37756 -14.32987 -14.17814 -13.76945 -13.73270 -13.55732 -13.38844 -13.34327 -13.07344 -12.93375 -12.75193 -12.39363 -12.24011 -12.14836 -12.07633 -11.96679 -11.65771 -11.48176 -11.29674 -11.10725 -10.92110 -10.88086 -10.71450 -10.52676 -10.24494 -10.12671 -9.63214 -9.49195 -9.19865 -8.65388 -8.43275 -7.64545 -6.03791 -4.08618 1.85471 2.33216 3.29054 3.35161 3.37072 3.40392 3.43184 3.54423 3.67525 4.02769 4.18576 4.24426 4.25526 4.44087 4.47095 4.68522 4.89274 5.01954 5.05822 5.07987 5.14307 5.15520 5.20204 5.30532 5.32432 5.37982 5.49848 5.51601 5.57762 5.60613 5.73371 5.74529 5.87641 5.97502 5.99100 6.19427 6.20968 6.45733 6.79121 6.90351 7.10832 7.46915 7.53130 7.56333 7.92766 8.24257 8.43722 8.91242 9.13656 9.56425 11.04209 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.003211 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.345628 B = 8716.583666 C =10025.784130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.517 6.517 15 C -0.003 4.003 16 N -0.440 5.440 17 C 0.004 3.996 18 C -0.130 4.130 19 C 0.003 3.997 20 H 0.086 0.914 21 C 0.137 3.863 22 N -0.701 5.701 23 C 0.486 3.514 24 O -0.508 6.508 25 C 0.280 3.720 26 C -0.181 4.181 27 F -0.177 7.177 28 F -0.189 7.189 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.407 0.593 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 -8.273 19.303 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.292 3.708 14 O -0.392 6.392 15 C -0.135 4.135 16 N -0.162 5.162 17 C -0.125 4.125 18 C -0.169 4.169 19 C -0.107 4.107 20 H 0.104 0.896 21 C 0.014 3.986 22 N -0.352 5.352 23 C 0.267 3.733 24 O -0.383 6.383 25 C 0.240 3.760 26 C -0.239 4.239 27 F -0.158 7.158 28 F -0.170 7.170 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.244 0.756 46 H 0.120 0.880 47 H 0.110 0.890 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.599 -6.521 19.593 23.211 hybrid contribution 1.277 -1.393 -1.114 2.194 sum -9.322 -7.913 18.478 22.158 Atomic orbital electron populations 1.22227 0.96737 1.01405 1.02390 1.21403 0.93514 0.84418 1.02472 1.48271 1.64231 1.13132 1.07696 1.19244 0.96158 0.93658 0.78030 1.21421 0.96940 1.31868 1.06226 0.92617 1.24937 0.97801 0.94935 0.96448 1.69936 1.35665 1.33360 1.14299 0.86508 0.84747 0.77659 0.78551 1.20688 1.21080 1.19968 1.19931 0.79353 0.87121 0.84403 1.90688 1.44315 1.17473 1.86701 1.22812 1.01899 0.95519 0.93309 1.68889 1.07060 1.40837 0.99428 1.23798 0.92678 1.02149 0.93891 1.23156 0.94145 1.02890 0.96675 1.23811 0.95154 0.98573 0.93130 0.89585 1.21512 0.84517 1.02168 0.90444 1.45955 1.12019 1.57729 1.19527 1.20736 0.83924 0.80032 0.88600 1.90766 1.80918 1.43791 1.22838 1.21364 0.98063 0.72898 0.83688 1.22633 0.92262 1.06731 1.02272 1.93138 1.96791 1.54144 1.71702 1.93066 1.97477 1.47137 1.79360 0.91839 0.92143 0.93315 0.89882 0.92187 0.95070 0.93909 0.92725 0.90994 0.89527 0.91103 0.88746 0.88298 0.90081 0.89980 0.90417 0.75617 0.88045 0.89011 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.15 0.38 -1.83 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.42 2.46 -175.06 -0.43 -12.85 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.51 10.37 7.74 -10.99 -0.09 10.28 16 14 O -0.52 -13.15 16.01 5.56 0.09 -13.06 16 15 C 0.00 -0.05 3.60 -4.97 -0.02 -0.07 16 16 N -0.44 -5.90 5.39 -237.96 -1.28 -7.18 16 17 C 0.00 0.04 7.71 -7.55 -0.06 -0.02 16 18 C -0.13 -1.09 8.00 -26.20 -0.21 -1.30 16 19 C 0.00 0.03 3.24 -71.44 -0.23 -0.20 16 20 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 21 C 0.14 1.35 5.81 -4.04 -0.02 1.33 16 22 N -0.70 -7.98 5.40 -60.29 -0.33 -8.31 16 23 C 0.49 5.98 7.23 -10.98 -0.08 5.90 16 24 O -0.51 -7.11 16.10 5.56 0.09 -7.02 16 25 C 0.28 3.13 2.47 -27.89 -0.07 3.06 16 26 C -0.18 -1.45 8.92 37.16 0.33 -1.11 16 27 F -0.18 -2.41 17.05 2.25 0.04 -2.37 16 28 F -0.19 -2.11 16.51 2.25 0.04 -2.07 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.61 7.22 -51.92 -0.37 0.23 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 0.87 6.56 -51.93 -0.34 0.53 16 38 H 0.09 1.03 5.31 -51.93 -0.28 0.75 16 39 H 0.07 0.74 7.42 -51.93 -0.39 0.35 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.10 0.84 7.94 -51.93 -0.41 0.43 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.41 4.67 5.77 -40.82 -0.24 4.44 16 46 H 0.10 0.81 7.87 -51.92 -0.41 0.40 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -35.51 400.93 -7.87 -43.38 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.31 Total: 1.99 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -0.53 Total: 10.57 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -1.30 Total: -54.30 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.18 Total: -20.09 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.51 -7.87 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401886816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.790 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds