Wall clock time and date at job start Wed Apr 1 2020 04:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47382 * 2 1 4 4 C 1.46502 * 120.00116 * 270.00745 * 3 2 1 5 5 C 1.50705 * 109.46690 * 269.99569 * 4 3 2 6 6 H 1.08003 * 120.00217 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99920 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99522 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00131 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47024 * 89.99953 * 9 7 5 11 11 H 1.48497 * 109.47594 * 209.99949 * 9 7 5 12 12 H 1.48506 * 109.47108 * 330.00365 * 9 7 5 13 13 C 1.34778 * 120.00122 * 90.00127 * 3 2 1 14 14 O 1.21275 * 120.00255 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99719 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47034 * 179.97438 * 15 13 3 17 17 C 1.47475 * 111.00434 * 265.97659 * 16 15 13 18 18 C 1.53513 * 87.93182 * 221.29779 * 17 16 15 19 19 C 1.47478 * 110.99981 * 170.00138 * 16 15 13 20 20 H 1.08999 * 113.47613 * 23.88278 * 19 16 15 21 21 C 1.53001 * 113.47965 * 253.47757 * 19 16 15 22 22 N 1.46493 * 109.47084 * 54.99648 * 21 19 16 23 23 C 1.34784 * 119.99864 * 180.02562 * 22 21 19 24 24 O 1.21283 * 119.99649 * 359.72839 * 23 22 21 25 25 C 1.50694 * 119.99988 * 179.72721 * 23 22 21 26 26 C 1.53000 * 109.47158 * 154.99915 * 25 23 22 27 27 F 1.39903 * 109.47384 * 274.99986 * 25 23 22 28 28 F 1.39900 * 109.47513 * 35.00046 * 25 23 22 29 29 H 1.09000 * 109.47369 * 59.99539 * 1 2 3 30 30 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47079 * 299.99508 * 1 2 3 32 32 H 1.09001 * 109.47410 * 240.00361 * 2 1 3 33 33 H 1.09001 * 109.47716 * 119.99767 * 2 1 3 34 34 H 1.08998 * 109.47223 * 29.99353 * 4 3 2 35 35 H 1.08993 * 109.47102 * 149.99678 * 4 3 2 36 36 H 0.97004 * 119.99455 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47016 * 60.00478 * 15 13 3 38 38 H 1.08996 * 109.47390 * 300.00430 * 15 13 3 39 39 H 1.09005 * 113.47460 * 336.06369 * 17 16 15 40 40 H 1.08997 * 113.47951 * 106.46779 * 17 16 15 41 41 H 1.08999 * 114.16615 * 272.37645 * 18 17 16 42 42 H 1.09005 * 114.16949 * 139.67101 * 18 17 16 43 43 H 1.09007 * 109.46593 * 294.99905 * 21 19 16 44 44 H 1.09006 * 109.47216 * 175.00363 * 21 19 16 45 45 H 0.97000 * 120.00740 * 359.72857 * 22 21 19 46 46 H 1.09007 * 109.46950 * 60.00086 * 26 25 23 47 47 H 1.08998 * 109.47209 * 179.97438 * 26 25 23 48 48 H 1.08996 * 109.47153 * 300.00546 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9136 2.0977 -3.4165 10 1 5.9774 0.8770 -4.2598 11 1 6.3926 3.2654 -4.1989 12 1 6.7735 1.9176 -2.2192 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3102 2.2061 3.5889 17 6 3.6949 2.0018 4.0534 18 6 3.1720 2.1271 5.4913 19 6 1.8554 1.6383 4.8717 20 1 1.7585 0.5527 4.8560 21 6 0.6179 2.3344 5.4418 22 7 -0.4541 2.3197 4.4435 23 6 -1.6464 2.8809 4.7267 24 8 -1.8333 3.3936 5.8098 25 6 -2.7471 2.8713 3.6975 26 6 -4.1029 2.9680 4.3999 27 9 -2.5894 3.9621 2.8358 28 9 -2.6870 1.6831 2.9614 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1383 36 1 3.6752 3.5172 -4.4435 37 1 2.6211 0.4186 2.5302 38 1 0.9432 1.0126 2.5298 39 1 4.0899 1.0131 3.8196 40 1 4.3727 2.8053 3.7652 41 1 3.1364 3.1502 5.8655 42 1 3.6229 1.4252 6.1929 43 1 0.8652 3.3656 5.6944 44 1 0.2868 1.8101 6.3384 45 1 -0.3045 1.9100 3.5771 46 1 -4.1498 3.8938 4.9734 47 1 -4.8990 2.9615 3.6554 48 1 -4.2257 2.1182 5.0712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401886816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:31 Heat of formation + Delta-G solvation = -152.181470 kcal Electronic energy + Delta-G solvation = -32419.080875 eV Core-core repulsion = 27759.405481 eV Total energy + Delta-G solvation = -4659.675394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -50.34227 -48.35526 -41.81047 -40.72791 -40.03258 -36.89784 -35.95845 -34.94352 -32.71845 -32.41775 -31.51947 -29.85451 -29.11060 -26.47357 -25.97605 -24.62356 -23.84966 -23.78846 -21.96658 -20.85784 -19.94711 -19.73755 -18.93510 -18.62291 -18.02716 -17.86737 -17.57961 -16.97450 -16.80673 -16.57648 -16.32428 -16.24366 -15.79389 -15.41428 -15.22674 -14.90003 -14.68418 -14.66764 -14.57854 -14.49932 -14.32889 -14.01994 -13.56830 -13.54916 -13.42197 -13.26435 -13.16612 -13.10702 -13.05271 -12.79490 -12.63852 -12.52591 -12.40556 -12.16609 -12.03420 -11.89381 -11.74180 -11.69702 -11.15695 -10.65337 -10.59976 -10.37521 -9.80495 -9.41599 -8.22906 -6.38216 0.90841 1.34565 1.38094 1.47707 1.48334 1.86927 2.20970 2.39458 2.57496 2.84525 3.01269 3.06397 3.34100 3.42324 3.44311 3.61636 3.79057 3.96505 4.02292 4.07910 4.25168 4.27233 4.33883 4.42370 4.48951 4.53840 4.55683 4.62264 4.77271 4.80753 4.90967 4.93941 4.97842 4.98879 5.04376 5.05725 5.18780 5.22680 5.33020 5.38033 5.57369 5.85053 5.97542 6.00065 6.06168 6.61927 6.70352 6.83869 7.28516 7.55294 8.84111 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.003211 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.345628 B = 8716.583666 C =10025.784130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.495 3.505 14 O -0.582 6.582 15 C 0.014 3.986 16 N -0.481 5.481 17 C -0.006 4.006 18 C -0.112 4.112 19 C 0.017 3.983 20 H 0.120 0.880 21 C 0.134 3.866 22 N -0.699 5.699 23 C 0.482 3.518 24 O -0.529 6.529 25 C 0.273 3.727 26 C -0.177 4.177 27 F -0.196 7.196 28 F -0.188 7.188 29 H 0.035 0.965 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.019 0.981 35 H -0.010 1.010 36 H 0.266 0.734 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.407 0.593 46 H 0.099 0.901 47 H 0.107 0.893 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 -11.487 21.341 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.283 3.717 14 O -0.461 6.461 15 C -0.117 4.117 16 N -0.204 5.204 17 C -0.134 4.134 18 C -0.150 4.150 19 C -0.093 4.093 20 H 0.137 0.863 21 C 0.011 3.989 22 N -0.350 5.350 23 C 0.264 3.736 24 O -0.406 6.406 25 C 0.234 3.766 26 C -0.234 4.234 27 F -0.177 7.177 28 F -0.169 7.169 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.037 0.963 35 H 0.008 0.992 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.243 0.757 46 H 0.117 0.883 47 H 0.126 0.874 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.490 -9.799 21.648 25.975 hybrid contribution 1.219 -0.363 -1.752 2.165 sum -9.270 -10.162 19.897 24.188 Atomic orbital electron populations 1.22167 0.94768 1.03560 1.01499 1.21754 0.95113 0.81379 1.04032 1.48304 1.64285 1.15101 1.06133 1.18634 0.95262 0.91248 0.80564 1.21700 0.97810 1.31913 1.06462 0.92772 1.25902 1.02498 0.94468 0.96507 1.70070 1.37863 1.34233 1.14784 0.85391 0.78867 0.78172 0.78220 1.18668 1.20828 1.19656 1.21173 0.77599 0.86677 0.86240 1.90649 1.47116 1.20523 1.87816 1.22703 1.03979 0.95405 0.89641 1.68831 1.08523 1.42203 1.00869 1.23884 0.91534 1.01841 0.96165 1.23096 0.93101 1.03490 0.95285 1.23897 0.94845 1.00086 0.90433 0.86256 1.21655 0.84545 1.01691 0.91006 1.46043 1.12059 1.57147 1.19722 1.20939 0.84376 0.79770 0.88551 1.90750 1.81365 1.44756 1.23711 1.21678 0.99388 0.72305 0.83266 1.22688 0.90681 1.07369 1.02681 1.93100 1.96978 1.55245 1.72407 1.93059 1.97558 1.46942 1.79384 0.94561 0.88347 0.92436 0.90958 0.87931 0.96289 0.99175 0.92473 0.87962 0.86983 0.89322 0.92146 0.89053 0.86612 0.91812 0.88131 0.75679 0.88253 0.87383 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.90 5.93 86.38 0.51 3.41 16 3 N -0.61 -25.54 2.46 -826.17 -2.03 -27.57 16 4 C 0.26 14.61 5.16 85.63 0.44 15.05 16 5 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.29 5.46 84.66 0.46 0.76 16 8 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.50 20.54 7.74 87.66 0.68 21.22 16 14 O -0.58 -31.27 16.01 -3.01 -0.05 -31.31 16 15 C 0.01 0.36 3.60 85.56 0.31 0.67 16 16 N -0.48 -12.22 5.39 -906.76 -4.88 -17.10 16 17 C -0.01 -0.12 7.71 83.57 0.64 0.52 16 18 C -0.11 -1.55 8.00 30.94 0.25 -1.30 16 19 C 0.02 0.25 3.24 42.19 0.14 0.39 16 20 H 0.12 1.09 7.91 -2.39 -0.02 1.07 16 21 C 0.13 2.34 5.81 86.38 0.50 2.84 16 22 N -0.70 -14.75 5.40 -463.05 -2.50 -17.25 16 23 C 0.48 11.37 7.23 87.65 0.63 12.00 16 24 O -0.53 -14.36 16.10 -3.04 -0.05 -14.41 16 25 C 0.27 5.88 2.47 29.85 0.07 5.95 16 26 C -0.18 -2.56 8.92 71.98 0.64 -1.91 16 27 F -0.20 -5.41 17.05 44.97 0.77 -4.64 16 28 F -0.19 -3.90 16.51 44.97 0.74 -3.16 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.28 7.22 -2.38 -0.02 1.27 16 32 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 33 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 34 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 35 H -0.01 -0.64 7.42 -2.39 -0.02 -0.66 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.10 2.02 6.56 -2.39 -0.02 2.01 16 38 H 0.11 2.28 5.31 -2.39 -0.01 2.26 16 39 H 0.09 1.58 7.42 -2.38 -0.02 1.56 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 1.42 7.94 -2.39 -0.02 1.40 16 42 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.06 1.36 7.88 -2.38 -0.02 1.34 16 44 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.41 8.54 5.77 -92.71 -0.54 8.00 16 46 H 0.10 1.49 7.87 -2.38 -0.02 1.48 16 47 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -84.14 400.93 1.02 -83.12 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.45 Total: 16.95 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 6.26 Total: 25.14 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -9.13 Total: -119.06 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.10 Total: -45.73 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 1.51 Total: -7.80 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -84.14 1.02 -83.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401886816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.057 kcal (2) G-P(sol) polarization free energy of solvation -84.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds