Wall clock time and date at job start Wed Apr 1 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47264 * 2 1 4 4 C 1.46496 * 119.99999 * 270.00433 * 3 2 1 5 5 C 1.50701 * 109.47152 * 269.99683 * 4 3 2 6 6 H 1.08006 * 119.99893 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00273 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99851 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47200 * 90.00381 * 9 7 5 11 11 H 1.48501 * 109.46909 * 210.00172 * 9 7 5 12 12 H 1.48500 * 109.47103 * 330.00095 * 9 7 5 13 13 C 1.34777 * 120.00148 * 89.99816 * 3 2 1 14 14 O 1.21276 * 120.00292 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99853 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47363 * 179.97438 * 15 13 3 17 17 C 1.47955 * 111.00525 * 169.99959 * 16 15 13 18 18 C 1.53937 * 86.18157 * 222.41550 * 17 16 15 19 19 N 1.46494 * 113.73257 * 269.35781 * 18 17 16 20 20 C 1.46505 * 120.00109 * 60.00370 * 19 18 17 21 21 C 1.34782 * 120.00072 * 239.99677 * 19 18 17 22 22 O 1.21270 * 119.99823 * 0.02562 * 21 19 18 23 23 C 1.50700 * 119.99796 * 180.02562 * 21 19 18 24 24 C 1.53002 * 109.46810 * 155.00400 * 23 21 19 25 25 F 1.39893 * 109.47380 * 275.00464 * 23 21 19 26 26 F 1.39903 * 109.47055 * 35.00875 * 23 21 19 27 27 C 1.47961 * 111.00015 * 70.63603 * 16 15 13 28 28 H 1.08994 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47081 * 299.99717 * 1 2 3 30 30 H 1.08996 * 109.47158 * 59.99787 * 1 2 3 31 31 H 1.08991 * 109.46983 * 240.00252 * 2 1 3 32 32 H 1.08998 * 109.47442 * 119.99491 * 2 1 3 33 33 H 1.09001 * 109.47131 * 29.99359 * 4 3 2 34 34 H 1.09000 * 109.47367 * 149.99483 * 4 3 2 35 35 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47366 * 59.99564 * 15 13 3 37 37 H 1.09002 * 109.46903 * 299.99852 * 15 13 3 38 38 H 1.09005 * 113.75866 * 108.09946 * 17 16 15 39 39 H 1.08996 * 113.75657 * 336.74002 * 17 16 15 40 40 H 1.09001 * 113.72893 * 138.08174 * 18 17 16 41 41 H 1.09008 * 109.46984 * 89.99409 * 20 19 18 42 42 H 1.08993 * 109.47005 * 209.99370 * 20 19 18 43 43 H 1.08998 * 109.46819 * 330.00153 * 20 19 18 44 44 H 1.08998 * 109.47423 * 60.00374 * 24 23 21 45 45 H 1.09002 * 109.47315 * 180.02562 * 24 23 21 46 46 H 1.09005 * 109.47268 * 300.00150 * 24 23 21 47 47 H 1.09002 * 113.75838 * 23.27140 * 27 16 15 48 48 H 1.09002 * 113.76303 * 251.90311 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9134 2.0968 -3.4169 10 1 5.9775 0.8755 -4.2592 11 1 6.3919 3.2641 -4.2004 12 1 6.7735 1.9181 -2.2196 13 6 2.2430 2.0167 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3061 2.4723 16 7 2.3109 2.2058 3.5889 17 6 1.8555 1.6357 4.8760 18 6 1.3682 3.0561 5.2148 19 7 2.3693 3.8742 5.9036 20 6 3.6530 4.1590 5.2575 21 6 2.1094 4.3652 7.1316 22 8 1.0470 4.1292 7.6666 23 6 3.1391 5.2073 7.8398 24 6 2.4428 6.1223 8.8492 25 9 4.0416 4.3747 8.5102 26 9 3.8292 5.9852 6.9039 27 6 1.3132 3.2933 3.6948 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0954 3.1411 -1.1384 35 1 3.6748 3.5157 -4.4444 36 1 2.6227 0.4188 2.5299 37 1 0.9444 1.0116 2.5302 38 1 2.6678 1.2864 5.5135 39 1 1.0506 0.9080 4.7736 40 1 0.3917 3.0810 5.6984 41 1 3.5706 5.0761 4.6740 42 1 4.4237 4.2806 6.0185 43 1 3.9196 3.3323 4.5990 44 1 1.9052 5.5163 9.5785 45 1 3.1875 6.7318 9.3612 46 1 1.7397 6.7711 8.3269 47 1 0.3496 3.0504 3.2470 48 1 1.6922 4.2684 3.3886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001402007415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:10 Heat of formation + Delta-G solvation = -107.038102 kcal Electronic energy + Delta-G solvation = -31927.398058 eV Core-core repulsion = 27269.680228 eV Total energy + Delta-G solvation = -4657.717830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.61173 -47.54058 -41.03733 -39.51088 -38.44831 -35.39604 -35.07643 -32.84296 -31.95623 -30.56560 -30.08209 -27.57820 -27.02946 -26.27349 -25.73422 -24.03683 -23.05017 -22.17780 -21.13178 -19.39544 -18.53900 -18.17350 -18.10550 -17.29759 -16.71261 -16.46660 -16.34445 -16.08692 -15.49522 -15.32556 -15.15132 -14.70739 -14.43686 -14.16007 -13.99027 -13.85687 -13.77610 -13.47923 -13.31397 -13.22603 -12.99906 -12.83759 -12.78158 -12.56095 -12.43552 -12.36379 -12.03660 -11.86246 -11.82416 -11.57319 -11.28013 -11.21988 -11.12415 -10.91768 -10.76214 -10.53185 -10.23259 -10.13642 -9.64194 -9.08748 -8.97436 -8.69168 -8.44550 -7.67965 -6.05394 -4.09937 1.76633 2.19072 3.28504 3.29290 3.35218 3.37293 3.43249 3.51821 3.58888 3.97150 3.99800 4.14407 4.30046 4.44212 4.62163 4.91543 4.97784 5.01143 5.05342 5.14483 5.17849 5.22000 5.29297 5.31769 5.35765 5.44959 5.48867 5.54261 5.56280 5.58904 5.70685 5.83886 5.96224 5.96747 6.17727 6.18118 6.23031 6.41397 6.71736 6.89142 7.07566 7.41921 7.42213 7.53501 7.91252 8.22519 8.40335 8.89595 9.09150 9.55365 11.02693 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.002525 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.376286 B =11087.297309 C =12323.204401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.525 6.525 15 C 0.000 4.000 16 N -0.456 5.456 17 C -0.009 4.009 18 C 0.108 3.892 19 N -0.568 5.568 20 C 0.062 3.938 21 C 0.486 3.514 22 O -0.511 6.511 23 C 0.284 3.716 24 C -0.181 4.181 25 F -0.182 7.182 26 F -0.183 7.183 27 C 0.011 3.989 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -1.431 22.101 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.401 6.401 15 C -0.132 4.132 16 N -0.178 5.178 17 C -0.139 4.139 18 C 0.003 3.997 19 N -0.299 5.299 20 C -0.080 4.080 21 C 0.269 3.731 22 O -0.387 6.387 23 C 0.244 3.756 24 C -0.239 4.239 25 F -0.163 7.163 26 F -0.164 7.164 27 C -0.119 4.119 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.113 -0.688 22.033 22.629 hybrid contribution 0.424 -0.622 -0.661 1.002 sum -4.689 -1.310 21.372 21.920 Atomic orbital electron populations 1.22218 0.96885 1.01387 1.02185 1.21401 0.93391 0.84367 1.02641 1.48269 1.63997 1.13201 1.07738 1.19241 0.96240 0.93556 0.78054 1.21428 0.96925 1.31814 1.06181 0.92511 1.24933 0.97847 0.94914 0.96422 1.69931 1.35724 1.33500 1.14318 0.86502 0.84722 0.77647 0.78597 1.20690 1.21095 1.19852 1.20032 0.78996 0.87113 0.84636 1.90669 1.44753 1.17810 1.86877 1.22707 1.00795 0.97524 0.92160 1.68479 1.42628 1.06509 1.00223 1.24480 1.00451 0.96017 0.92923 1.22581 0.92590 0.90740 0.93743 1.47529 1.17866 1.48810 1.15676 1.22393 0.82287 1.04345 0.98977 1.20809 0.88374 0.81352 0.82606 1.90750 1.24249 1.58300 1.65352 1.21270 0.83542 0.85219 0.85573 1.22632 1.02343 0.99912 0.99004 1.93085 1.69474 1.73079 1.80695 1.93086 1.81206 1.75714 1.66419 1.24248 0.95730 0.99253 0.92639 0.92168 0.93346 0.91986 0.89913 0.91910 0.95142 0.93978 0.92736 0.88200 0.91763 0.88751 0.89899 0.86930 0.91289 0.91077 0.87453 0.88113 0.89072 0.88767 0.90085 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.14 2.46 -175.06 -0.43 -12.57 16 4 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 5 C -0.52 -14.72 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 9.97 7.48 -10.98 -0.08 9.89 16 14 O -0.53 -12.59 15.13 5.56 0.08 -12.51 16 15 C 0.00 0.00 3.86 -4.98 -0.02 -0.02 16 16 N -0.46 -6.02 4.07 -239.90 -0.98 -7.00 16 17 C -0.01 -0.09 7.45 -2.77 -0.02 -0.11 16 18 C 0.11 1.19 4.51 -69.63 -0.31 0.87 16 19 N -0.57 -6.59 3.09 -175.28 -0.54 -7.13 16 20 C 0.06 0.72 8.06 59.85 0.48 1.20 16 21 C 0.49 5.69 7.14 -10.98 -0.08 5.61 16 22 O -0.51 -6.87 15.59 5.57 0.09 -6.78 16 23 C 0.28 2.82 1.82 -27.88 -0.05 2.77 16 24 C -0.18 -1.30 8.92 37.16 0.33 -0.97 16 25 F -0.18 -1.94 16.81 2.25 0.04 -1.90 16 26 F -0.18 -1.91 13.85 2.25 0.03 -1.88 16 27 C 0.01 0.13 5.99 -2.77 -0.02 0.12 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.10 1.27 7.40 -51.93 -0.38 0.88 16 37 H 0.06 0.73 6.74 -51.93 -0.35 0.38 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 40 H 0.11 1.20 7.25 -51.93 -0.38 0.82 16 41 H 0.07 0.83 7.99 -51.92 -0.41 0.42 16 42 H 0.07 0.76 5.88 -51.93 -0.31 0.45 16 43 H 0.11 1.39 6.07 -51.93 -0.32 1.07 16 44 H 0.10 0.71 7.87 -51.93 -0.41 0.30 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.95 7.78 -51.93 -0.40 0.55 16 48 H 0.10 1.53 7.77 -51.93 -0.40 1.12 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -33.70 393.13 -7.29 -40.98 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.36 Total: -0.30 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 0.14 Total: 12.12 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -1.21 Total: -52.45 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.17 Total: -19.29 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.07 Total: -3.78 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.70 -7.29 -40.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001402007415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.056 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds