Wall clock time and date at job start Wed Apr 1 2020 04:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47264 * 2 1 4 4 C 1.46496 * 119.99999 * 270.00433 * 3 2 1 5 5 C 1.50701 * 109.47152 * 269.99683 * 4 3 2 6 6 H 1.08006 * 119.99893 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00273 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99851 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47200 * 90.00381 * 9 7 5 11 11 H 1.48501 * 109.46909 * 210.00172 * 9 7 5 12 12 H 1.48500 * 109.47103 * 330.00095 * 9 7 5 13 13 C 1.34777 * 120.00148 * 89.99816 * 3 2 1 14 14 O 1.21276 * 120.00292 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99853 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47363 * 179.97438 * 15 13 3 17 17 C 1.47955 * 111.00525 * 169.99959 * 16 15 13 18 18 C 1.53937 * 86.18157 * 222.41550 * 17 16 15 19 19 N 1.46494 * 113.73257 * 269.35781 * 18 17 16 20 20 C 1.46505 * 120.00109 * 60.00370 * 19 18 17 21 21 C 1.34782 * 120.00072 * 239.99677 * 19 18 17 22 22 O 1.21270 * 119.99823 * 0.02562 * 21 19 18 23 23 C 1.50700 * 119.99796 * 180.02562 * 21 19 18 24 24 C 1.53002 * 109.46810 * 155.00400 * 23 21 19 25 25 F 1.39893 * 109.47380 * 275.00464 * 23 21 19 26 26 F 1.39903 * 109.47055 * 35.00875 * 23 21 19 27 27 C 1.47961 * 111.00015 * 70.63603 * 16 15 13 28 28 H 1.08994 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47081 * 299.99717 * 1 2 3 30 30 H 1.08996 * 109.47158 * 59.99787 * 1 2 3 31 31 H 1.08991 * 109.46983 * 240.00252 * 2 1 3 32 32 H 1.08998 * 109.47442 * 119.99491 * 2 1 3 33 33 H 1.09001 * 109.47131 * 29.99359 * 4 3 2 34 34 H 1.09000 * 109.47367 * 149.99483 * 4 3 2 35 35 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47366 * 59.99564 * 15 13 3 37 37 H 1.09002 * 109.46903 * 299.99852 * 15 13 3 38 38 H 1.09005 * 113.75866 * 108.09946 * 17 16 15 39 39 H 1.08996 * 113.75657 * 336.74002 * 17 16 15 40 40 H 1.09001 * 113.72893 * 138.08174 * 18 17 16 41 41 H 1.09008 * 109.46984 * 89.99409 * 20 19 18 42 42 H 1.08993 * 109.47005 * 209.99370 * 20 19 18 43 43 H 1.08998 * 109.46819 * 330.00153 * 20 19 18 44 44 H 1.08998 * 109.47423 * 60.00374 * 24 23 21 45 45 H 1.09002 * 109.47315 * 180.02562 * 24 23 21 46 46 H 1.09005 * 109.47268 * 300.00150 * 24 23 21 47 47 H 1.09002 * 113.75838 * 23.27140 * 27 16 15 48 48 H 1.09002 * 113.76303 * 251.90311 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9134 2.0968 -3.4169 10 1 5.9775 0.8755 -4.2592 11 1 6.3919 3.2641 -4.2004 12 1 6.7735 1.9181 -2.2196 13 6 2.2430 2.0167 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3061 2.4723 16 7 2.3109 2.2058 3.5889 17 6 1.8555 1.6357 4.8760 18 6 1.3682 3.0561 5.2148 19 7 2.3693 3.8742 5.9036 20 6 3.6530 4.1590 5.2575 21 6 2.1094 4.3652 7.1316 22 8 1.0470 4.1292 7.6666 23 6 3.1391 5.2073 7.8398 24 6 2.4428 6.1223 8.8492 25 9 4.0416 4.3747 8.5102 26 9 3.8292 5.9852 6.9039 27 6 1.3132 3.2933 3.6948 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0954 3.1411 -1.1384 35 1 3.6748 3.5157 -4.4444 36 1 2.6227 0.4188 2.5299 37 1 0.9444 1.0116 2.5302 38 1 2.6678 1.2864 5.5135 39 1 1.0506 0.9080 4.7736 40 1 0.3917 3.0810 5.6984 41 1 3.5706 5.0761 4.6740 42 1 4.4237 4.2806 6.0185 43 1 3.9196 3.3323 4.5990 44 1 1.9052 5.5163 9.5785 45 1 3.1875 6.7318 9.3612 46 1 1.7397 6.7711 8.3269 47 1 0.3496 3.0504 3.2470 48 1 1.6922 4.2684 3.3886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001402007415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:08 Heat of formation + Delta-G solvation = -130.005340 kcal Electronic energy + Delta-G solvation = -31928.393992 eV Core-core repulsion = 27269.680228 eV Total energy + Delta-G solvation = -4658.713764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.42231 -48.35581 -42.01848 -40.71356 -39.71632 -36.89735 -36.15106 -34.91202 -32.67451 -31.88176 -31.34449 -29.15284 -28.15549 -27.22225 -26.78587 -25.33437 -24.45474 -23.62392 -21.99951 -20.28216 -19.96206 -19.11965 -18.92618 -18.62692 -18.17451 -17.96365 -17.48867 -17.16564 -16.75015 -16.46403 -16.31202 -16.21627 -15.53851 -15.31736 -15.17449 -14.86873 -14.68880 -14.63017 -14.49171 -14.22846 -14.12296 -13.92076 -13.60285 -13.53482 -13.43384 -13.37392 -13.27709 -13.24685 -13.11942 -12.81271 -12.74606 -12.67032 -12.51160 -12.24718 -12.16656 -12.09709 -11.81332 -11.70536 -11.14139 -10.64414 -10.50211 -9.97088 -9.75898 -9.39032 -8.22497 -6.37092 0.85456 1.33988 1.35497 1.38627 1.48889 1.89148 2.25858 2.41112 2.43905 2.78471 2.87471 3.06972 3.24209 3.32841 3.45986 3.67281 3.72901 4.07237 4.11302 4.11953 4.29753 4.33530 4.43979 4.45461 4.48582 4.51020 4.54414 4.58527 4.64481 4.72473 4.80812 4.92911 4.94541 4.99754 5.00548 5.06065 5.20662 5.26084 5.27465 5.39086 5.58475 5.77974 5.89481 5.98960 6.07456 6.50398 6.71476 6.85347 7.29586 7.55537 8.84307 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.002525 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.376286 B =11087.297309 C =12323.204401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.496 3.504 14 O -0.581 6.581 15 C 0.016 3.984 16 N -0.480 5.480 17 C 0.007 3.993 18 C 0.110 3.890 19 N -0.572 5.572 20 C 0.072 3.928 21 C 0.483 3.517 22 O -0.529 6.529 23 C 0.282 3.718 24 C -0.178 4.178 25 F -0.186 7.186 26 F -0.188 7.188 27 C 0.010 3.990 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.019 0.981 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 -3.587 23.994 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.284 3.716 14 O -0.460 6.460 15 C -0.115 4.115 16 N -0.203 5.203 17 C -0.122 4.122 18 C 0.006 3.994 19 N -0.302 5.302 20 C -0.070 4.070 21 C 0.267 3.733 22 O -0.406 6.406 23 C 0.243 3.757 24 C -0.235 4.235 25 F -0.167 7.167 26 F -0.169 7.169 27 C -0.120 4.120 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.037 0.963 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.117 0.883 47 H 0.109 0.891 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.151 -2.897 23.945 24.664 hybrid contribution 0.397 0.067 -1.260 1.323 sum -4.754 -2.829 22.685 23.350 Atomic orbital electron populations 1.22146 0.94593 1.03453 1.01602 1.21732 0.95244 0.81426 1.03863 1.48297 1.64247 1.15102 1.06222 1.18632 0.95071 0.91409 0.80549 1.21706 0.97954 1.31765 1.06366 0.93003 1.25851 1.02311 0.94522 0.96516 1.70052 1.37783 1.34339 1.14791 0.85434 0.79137 0.78160 0.78203 1.18813 1.20734 1.19774 1.21149 0.77450 0.86720 0.86233 1.90642 1.47077 1.20469 1.87831 1.22638 1.03227 0.97080 0.88568 1.68473 1.43528 1.07047 1.01299 1.24523 1.01372 0.95701 0.90609 1.22604 0.92906 0.91451 0.92419 1.47631 1.17844 1.48882 1.15817 1.22243 0.82711 1.03244 0.98845 1.21124 0.88548 0.81149 0.82488 1.90735 1.25031 1.59015 1.65770 1.21437 0.83150 0.85291 0.85848 1.22689 1.02803 0.99649 0.98386 1.93077 1.69617 1.73354 1.80677 1.93079 1.81300 1.75711 1.66810 1.24174 0.95833 0.97875 0.94075 0.88673 0.92003 0.94541 0.91297 0.88060 0.96314 0.98737 0.92469 0.86109 0.88304 0.88300 0.86725 0.86150 0.92452 0.90185 0.88626 0.87818 0.87053 0.88255 0.89075 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.24 71.98 0.74 -2.88 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.61 -24.77 2.46 -826.17 -2.03 -26.80 16 4 C 0.27 14.23 5.16 85.63 0.44 14.67 16 5 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 9 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.50 19.57 7.48 87.66 0.66 20.22 16 14 O -0.58 -29.11 15.13 -3.02 -0.05 -29.15 16 15 C 0.02 0.39 3.86 85.56 0.33 0.72 16 16 N -0.48 -11.93 4.07 -912.90 -3.72 -15.65 16 17 C 0.01 0.12 7.45 86.41 0.64 0.76 16 18 C 0.11 2.26 4.51 46.56 0.21 2.47 16 19 N -0.57 -12.86 3.09 -826.84 -2.56 -15.42 16 20 C 0.07 1.67 8.06 127.77 1.03 2.70 16 21 C 0.48 10.87 7.14 87.66 0.63 11.50 16 22 O -0.53 -13.56 15.59 -3.00 -0.05 -13.61 16 23 C 0.28 5.31 1.82 29.85 0.05 5.37 16 24 C -0.18 -2.28 8.92 71.98 0.64 -1.64 16 25 F -0.19 -3.74 16.81 44.97 0.76 -2.98 16 26 F -0.19 -3.82 13.85 44.97 0.62 -3.20 16 27 C 0.01 0.25 5.99 86.41 0.52 0.77 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.24 7.22 -2.38 -0.02 1.22 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 32 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 33 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 34 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.12 2.56 7.40 -2.39 -0.02 2.54 16 37 H 0.10 1.81 6.74 -2.39 -0.02 1.79 16 38 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.11 1.27 7.79 -2.39 -0.02 1.25 16 40 H 0.12 2.32 7.25 -2.39 -0.02 2.30 16 41 H 0.06 1.45 7.99 -2.38 -0.02 1.44 16 42 H 0.08 1.69 5.88 -2.39 -0.01 1.68 16 43 H 0.10 2.49 6.07 -2.39 -0.01 2.48 16 44 H 0.10 1.29 7.87 -2.39 -0.02 1.27 16 45 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.09 2.03 7.78 -2.39 -0.02 2.02 16 48 H 0.07 2.22 7.77 -2.39 -0.02 2.20 16 Total: -1.00 -77.62 393.13 3.36 -74.26 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.97 Total: 13.71 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 7.10 Total: 27.97 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -8.02 Total: -114.21 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.09 Total: -42.76 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 1.38 Total: -6.18 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -77.62 3.36 -74.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001402007415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.749 kcal (2) G-P(sol) polarization free energy of solvation -77.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds