Wall clock time and date at job start Wed Apr 1 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.46955 * 2 1 4 4 C 1.46498 * 120.00192 * 269.99907 * 3 2 1 5 5 C 1.50702 * 109.47625 * 270.00293 * 4 3 2 6 6 H 1.07999 * 119.99246 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00108 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99828 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00391 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47104 * 90.00062 * 9 7 5 11 11 H 1.48497 * 109.47259 * 210.00296 * 9 7 5 12 12 H 1.48508 * 109.46856 * 330.00073 * 9 7 5 13 13 C 1.34778 * 120.00026 * 90.00224 * 3 2 1 14 14 O 1.21279 * 119.99853 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99837 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47290 * 180.02562 * 15 13 3 17 17 C 1.47440 * 110.99676 * 290.12778 * 16 15 13 18 18 C 1.54317 * 107.23368 * 236.73977 * 17 16 15 19 19 C 1.55144 * 103.01861 * 337.71644 * 18 17 16 20 20 H 1.09000 * 110.99290 * 277.56635 * 19 18 17 21 21 N 1.46503 * 110.99518 * 153.74548 * 19 18 17 22 22 C 1.34767 * 120.00041 * 86.45245 * 21 19 18 23 23 O 1.21282 * 120.00027 * 0.02562 * 22 21 19 24 24 C 1.50699 * 120.00026 * 180.02562 * 22 21 19 25 25 C 1.53002 * 109.47495 * 204.99970 * 24 22 21 26 26 F 1.39895 * 109.47166 * 325.00291 * 24 22 21 27 27 F 1.39905 * 109.46910 * 85.00242 * 24 22 21 28 28 C 1.47842 * 111.00238 * 169.28167 * 16 15 13 29 29 H 1.09001 * 109.47154 * 299.99804 * 1 2 3 30 30 H 1.09002 * 109.47367 * 60.00368 * 1 2 3 31 31 H 1.09008 * 109.46826 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47154 * 240.00196 * 2 1 3 33 33 H 1.09004 * 109.47212 * 120.00153 * 2 1 3 34 34 H 1.09006 * 109.47161 * 30.00311 * 4 3 2 35 35 H 1.08995 * 109.47639 * 149.99819 * 4 3 2 36 36 H 0.96993 * 119.99756 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47267 * 60.00139 * 15 13 3 38 38 H 1.09006 * 109.47446 * 300.00062 * 15 13 3 39 39 H 1.09000 * 109.89463 * 117.33566 * 17 16 15 40 40 H 1.09001 * 110.02673 * 356.21799 * 17 16 15 41 41 H 1.08999 * 110.70846 * 96.09223 * 18 17 16 42 42 H 1.09000 * 110.71111 * 219.33808 * 18 17 16 43 43 H 0.97000 * 119.99567 * 266.45542 * 21 19 18 44 44 H 1.08997 * 109.46709 * 59.99458 * 25 24 22 45 45 H 1.08992 * 109.47376 * 180.02562 * 25 24 22 46 46 H 1.09003 * 109.46737 * 300.00206 * 25 24 22 47 47 H 1.09004 * 110.37187 * 265.19138 * 28 16 15 48 48 H 1.09002 * 110.37256 * 27.42242 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1492 2.3907 -2.8775 8 7 5.3912 2.1836 -3.2574 9 14 3.0129 3.4362 -3.9287 10 1 3.1155 4.8562 -3.5068 11 1 3.4065 3.3140 -5.3553 12 1 1.6133 2.9694 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 3.7619 2.4388 3.6832 18 6 4.2004 2.0220 5.1028 19 6 2.8825 2.1127 5.9164 20 1 2.6878 3.1379 6.2313 21 7 2.9139 1.2089 7.0690 22 6 3.4557 1.6194 8.2327 23 8 3.9169 2.7373 8.3259 24 6 3.4885 0.6895 9.4181 25 6 3.5463 1.5097 10.7084 26 9 2.3359 -0.1034 9.4208 27 9 4.6188 -0.1309 9.3360 28 6 1.8376 1.6450 4.8727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5816 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 5.7171 2.5741 -4.0833 37 1 2.6211 0.4187 2.5302 38 1 0.9431 1.0125 2.5299 39 1 3.9798 3.4947 3.5229 40 1 4.2853 1.8356 2.9414 41 1 4.5842 1.0018 5.1037 42 1 4.9442 2.7152 5.4957 43 1 2.5447 0.3150 6.9945 44 1 2.6658 2.1490 10.7722 45 1 3.5705 0.8372 11.5657 46 1 4.4444 2.1275 10.7062 47 1 0.8517 2.0387 5.1200 48 1 1.8093 0.5564 4.8232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001402160470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:00 Heat of formation + Delta-G solvation = -151.449051 kcal Electronic energy + Delta-G solvation = -31217.113097 eV Core-core repulsion = 26557.469464 eV Total energy + Delta-G solvation = -4659.643633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.71751 -47.71263 -40.52777 -39.53167 -38.22314 -35.43801 -34.87690 -32.76628 -32.16287 -31.33628 -30.33119 -28.98434 -28.16679 -26.24307 -24.97226 -22.99956 -22.36716 -21.66955 -21.36276 -20.74079 -19.11661 -18.34134 -18.25823 -17.33172 -16.95132 -16.60748 -16.59257 -16.06370 -15.76264 -15.37068 -15.07571 -14.70503 -14.52159 -14.08256 -14.02920 -14.00553 -13.85391 -13.62871 -13.55219 -13.49797 -13.13151 -12.97959 -12.90533 -12.53161 -12.48275 -12.38328 -12.21685 -11.99557 -11.76257 -11.69131 -11.56996 -11.34365 -10.99620 -10.88223 -10.69277 -10.50787 -10.49055 -10.15561 -9.66142 -9.54751 -9.03048 -8.59137 -8.30596 -7.71268 -6.09265 -4.07870 1.63913 2.06192 3.15472 3.29060 3.34879 3.35803 3.37217 3.39830 3.59004 3.89623 3.99712 4.11223 4.27118 4.39446 4.46702 4.79559 4.87855 4.95237 5.00962 5.06759 5.14840 5.16048 5.24918 5.28240 5.33469 5.36857 5.41118 5.52902 5.57315 5.68124 5.73691 5.84492 5.92503 5.93801 6.12119 6.26451 6.36358 6.65537 6.69774 6.85963 6.86930 6.98647 7.33841 7.36436 7.61281 8.26580 8.46741 8.92551 9.02278 9.51390 11.04103 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.002085 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.955108 B =13428.239336 C =13986.017521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.032 3.968 16 N -0.505 5.505 17 C 0.053 3.947 18 C -0.154 4.154 19 C 0.133 3.867 20 H 0.111 0.889 21 N -0.702 5.702 22 C 0.488 3.512 23 O -0.496 6.496 24 C 0.282 3.718 25 C -0.183 4.183 26 F -0.189 7.189 27 F -0.181 7.181 28 C 0.039 3.961 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.407 0.593 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 -7.623 25.105 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.395 6.395 15 C -0.099 4.099 16 N -0.229 5.229 17 C -0.075 4.075 18 C -0.194 4.194 19 C 0.029 3.971 20 H 0.129 0.871 21 N -0.353 5.353 22 C 0.268 3.732 23 O -0.370 6.370 24 C 0.242 3.758 25 C -0.241 4.241 26 F -0.170 7.170 27 F -0.162 7.162 28 C -0.089 4.089 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.243 0.757 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.121 0.879 47 H 0.109 0.891 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.824 -5.700 24.870 26.998 hybrid contribution -0.202 -1.124 -0.687 1.332 sum -9.026 -6.824 24.183 26.699 Atomic orbital electron populations 1.22239 0.96765 1.01518 1.02306 1.21427 0.93405 0.83993 1.02947 1.47938 1.64654 1.13308 1.06985 1.19622 0.97204 0.93412 0.80041 1.21314 0.95344 1.32822 1.07081 0.90914 1.24863 0.95005 0.95824 0.97390 1.69898 1.15150 1.45022 1.23577 0.86842 0.81441 0.81643 0.79708 1.19893 1.21123 1.19089 1.20082 0.78804 0.87121 0.84613 1.90679 1.44387 1.17638 1.86814 1.22299 1.02449 0.94204 0.90952 1.63305 1.14992 1.43590 1.01031 1.22779 0.86547 1.03621 0.94507 1.23252 0.97547 1.02561 0.95994 1.22284 0.95831 0.94917 0.84104 0.87102 1.45930 1.59980 1.18459 1.10955 1.20725 0.79846 0.88434 0.84195 1.90815 1.44300 1.19127 1.82736 1.21385 0.72632 0.83819 0.97982 1.22648 1.07022 1.01098 0.93306 1.93066 1.49930 1.76452 1.97577 1.93108 1.51393 1.74311 1.97369 1.23246 0.98795 0.98176 0.88703 0.92977 0.92148 0.92034 0.89741 0.91714 0.95346 0.94584 0.92584 0.92082 0.88440 0.89066 0.91877 0.91086 0.89800 0.75691 0.88693 0.89010 0.87934 0.89068 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.15 0.38 -1.64 16 2 C 0.11 1.57 5.93 -4.04 -0.02 1.55 16 3 N -0.60 -11.84 2.46 -175.06 -0.43 -12.27 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -14.99 9.94 -34.44 -0.34 -15.33 16 6 H 0.07 2.27 8.06 -52.49 -0.42 1.84 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 9 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 10.01 7.32 -10.99 -0.08 9.93 16 14 O -0.52 -12.56 15.13 5.56 0.08 -12.48 16 15 C 0.03 0.45 3.58 -4.98 -0.02 0.43 16 16 N -0.50 -6.85 4.85 -232.69 -1.13 -7.98 16 17 C 0.05 0.76 5.64 -2.84 -0.02 0.74 16 18 C -0.15 -1.72 6.64 -24.91 -0.17 -1.89 16 19 C 0.13 1.30 3.31 -65.79 -0.22 1.08 16 20 H 0.11 1.22 7.73 -51.93 -0.40 0.82 16 21 N -0.70 -5.70 5.16 -51.74 -0.27 -5.97 16 22 C 0.49 4.60 7.23 -10.99 -0.08 4.52 16 23 O -0.50 -6.12 15.84 5.56 0.09 -6.03 16 24 C 0.28 2.14 2.47 -27.88 -0.07 2.07 16 25 C -0.18 -1.01 8.92 37.16 0.33 -0.68 16 26 F -0.19 -1.38 16.51 2.25 0.04 -1.34 16 27 F -0.18 -1.61 17.05 2.25 0.04 -1.57 16 28 C 0.04 0.37 6.31 -2.30 -0.01 0.35 16 29 H 0.05 0.58 7.22 -51.93 -0.37 0.20 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 37 H 0.06 0.76 7.22 -51.93 -0.38 0.39 16 38 H 0.10 1.11 7.11 -51.93 -0.37 0.74 16 39 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.06 1.00 7.32 -51.93 -0.38 0.62 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.41 2.43 8.07 -40.82 -0.33 2.10 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.60 7.87 -51.93 -0.41 0.20 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -35.31 396.60 -7.42 -42.73 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.49 Total: 0.52 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -0.43 Total: 8.35 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -1.05 Total: -53.06 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.51 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.31 -7.42 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001402160470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.720 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds