Wall clock time and date at job start Wed Apr 1 2020 04:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.46955 * 2 1 4 4 C 1.46498 * 120.00192 * 269.99907 * 3 2 1 5 5 C 1.50702 * 109.47625 * 270.00293 * 4 3 2 6 6 H 1.07999 * 119.99246 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00108 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99828 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00391 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47104 * 90.00062 * 9 7 5 11 11 H 1.48497 * 109.47259 * 210.00296 * 9 7 5 12 12 H 1.48508 * 109.46856 * 330.00073 * 9 7 5 13 13 C 1.34778 * 120.00026 * 90.00224 * 3 2 1 14 14 O 1.21279 * 119.99853 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99837 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47290 * 180.02562 * 15 13 3 17 17 C 1.47440 * 110.99676 * 290.12778 * 16 15 13 18 18 C 1.54317 * 107.23368 * 236.73977 * 17 16 15 19 19 C 1.55144 * 103.01861 * 337.71644 * 18 17 16 20 20 H 1.09000 * 110.99290 * 277.56635 * 19 18 17 21 21 N 1.46503 * 110.99518 * 153.74548 * 19 18 17 22 22 C 1.34767 * 120.00041 * 86.45245 * 21 19 18 23 23 O 1.21282 * 120.00027 * 0.02562 * 22 21 19 24 24 C 1.50699 * 120.00026 * 180.02562 * 22 21 19 25 25 C 1.53002 * 109.47495 * 204.99970 * 24 22 21 26 26 F 1.39895 * 109.47166 * 325.00291 * 24 22 21 27 27 F 1.39905 * 109.46910 * 85.00242 * 24 22 21 28 28 C 1.47842 * 111.00238 * 169.28167 * 16 15 13 29 29 H 1.09001 * 109.47154 * 299.99804 * 1 2 3 30 30 H 1.09002 * 109.47367 * 60.00368 * 1 2 3 31 31 H 1.09008 * 109.46826 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47154 * 240.00196 * 2 1 3 33 33 H 1.09004 * 109.47212 * 120.00153 * 2 1 3 34 34 H 1.09006 * 109.47161 * 30.00311 * 4 3 2 35 35 H 1.08995 * 109.47639 * 149.99819 * 4 3 2 36 36 H 0.96993 * 119.99756 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47267 * 60.00139 * 15 13 3 38 38 H 1.09006 * 109.47446 * 300.00062 * 15 13 3 39 39 H 1.09000 * 109.89463 * 117.33566 * 17 16 15 40 40 H 1.09001 * 110.02673 * 356.21799 * 17 16 15 41 41 H 1.08999 * 110.70846 * 96.09223 * 18 17 16 42 42 H 1.09000 * 110.71111 * 219.33808 * 18 17 16 43 43 H 0.97000 * 119.99567 * 266.45542 * 21 19 18 44 44 H 1.08997 * 109.46709 * 59.99458 * 25 24 22 45 45 H 1.08992 * 109.47376 * 180.02562 * 25 24 22 46 46 H 1.09003 * 109.46737 * 300.00206 * 25 24 22 47 47 H 1.09004 * 110.37187 * 265.19138 * 28 16 15 48 48 H 1.09002 * 110.37256 * 27.42242 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1492 2.3907 -2.8775 8 7 5.3912 2.1836 -3.2574 9 14 3.0129 3.4362 -3.9287 10 1 3.1155 4.8562 -3.5068 11 1 3.4065 3.3140 -5.3553 12 1 1.6133 2.9694 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 3.7619 2.4388 3.6832 18 6 4.2004 2.0220 5.1028 19 6 2.8825 2.1127 5.9164 20 1 2.6878 3.1379 6.2313 21 7 2.9139 1.2089 7.0690 22 6 3.4557 1.6194 8.2327 23 8 3.9169 2.7373 8.3259 24 6 3.4885 0.6895 9.4181 25 6 3.5463 1.5097 10.7084 26 9 2.3359 -0.1034 9.4208 27 9 4.6188 -0.1309 9.3360 28 6 1.8376 1.6450 4.8727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5816 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 5.7171 2.5741 -4.0833 37 1 2.6211 0.4187 2.5302 38 1 0.9431 1.0125 2.5299 39 1 3.9798 3.4947 3.5229 40 1 4.2853 1.8356 2.9414 41 1 4.5842 1.0018 5.1037 42 1 4.9442 2.7152 5.4957 43 1 2.5447 0.3150 6.9945 44 1 2.6658 2.1490 10.7722 45 1 3.5705 0.8372 11.5657 46 1 4.4444 2.1275 10.7062 47 1 0.8517 2.0387 5.1200 48 1 1.8093 0.5564 4.8232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001402160470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:56 Heat of formation + Delta-G solvation = -178.460579 kcal Electronic energy + Delta-G solvation = -31218.284405 eV Core-core repulsion = 26557.469464 eV Total energy + Delta-G solvation = -4660.814941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -50.32885 -48.32436 -41.43163 -40.77589 -39.35774 -36.93711 -35.81922 -34.85669 -32.85829 -32.34489 -31.71486 -30.01654 -29.63599 -27.50886 -25.73667 -24.42954 -23.91745 -22.48268 -22.27762 -21.70901 -19.83625 -19.72797 -19.11269 -18.91448 -18.09619 -17.97024 -17.43255 -17.17186 -16.82537 -16.56268 -16.22280 -15.88349 -15.68429 -15.16613 -15.07826 -14.91896 -14.67911 -14.63681 -14.55000 -14.53498 -14.48746 -14.01314 -13.71956 -13.55756 -13.55318 -13.37139 -13.33031 -13.18212 -13.09081 -12.90484 -12.59698 -12.54337 -12.49616 -12.31451 -12.03626 -11.95013 -11.80123 -11.74469 -11.25412 -10.83877 -10.59638 -10.44512 -9.37716 -9.34929 -8.34885 -6.39273 0.90161 1.31073 1.35625 1.36177 1.43633 1.86450 2.21427 2.29959 2.55166 2.83815 2.99538 3.01045 3.34545 3.38622 3.45428 3.53137 3.77172 3.91795 4.08848 4.16158 4.20444 4.27221 4.34574 4.45209 4.50655 4.52985 4.57045 4.66402 4.75830 4.78840 4.81283 4.89403 4.92935 4.96023 5.02945 5.03885 5.05229 5.17675 5.41545 5.47627 5.66977 5.77478 5.92170 6.03173 6.24893 6.61707 6.67090 6.77438 7.22083 7.50705 8.81982 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.002085 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.955108 B =13428.239336 C =13986.017521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.027 0.973 7 C 0.009 3.991 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.238 1.238 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.047 3.953 16 N -0.526 5.526 17 C 0.059 3.941 18 C -0.144 4.144 19 C 0.142 3.858 20 H 0.096 0.904 21 N -0.689 5.689 22 C 0.485 3.515 23 O -0.530 6.530 24 C 0.287 3.713 25 C -0.183 4.183 26 F -0.184 7.184 27 F -0.188 7.188 28 C 0.046 3.954 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.015 0.985 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.421 0.579 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 -9.533 26.633 30.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.046 0.954 7 C -0.189 4.189 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.161 1.161 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.084 4.084 16 N -0.251 5.251 17 C -0.070 4.070 18 C -0.184 4.184 19 C 0.036 3.964 20 H 0.114 0.886 21 N -0.341 5.341 22 C 0.266 3.734 23 O -0.406 6.406 24 C 0.248 3.752 25 C -0.240 4.240 26 F -0.165 7.165 27 F -0.169 7.169 28 C -0.081 4.081 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.260 0.740 44 H 0.121 0.879 45 H 0.130 0.870 46 H 0.115 0.885 47 H 0.127 0.873 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.035 -7.700 26.423 30.038 hybrid contribution 0.862 -0.580 -1.119 1.527 sum -11.173 -8.279 25.304 28.873 Atomic orbital electron populations 1.22161 0.93848 1.03638 1.02172 1.21773 0.95709 0.81074 1.03848 1.48073 1.64620 1.15209 1.05702 1.19238 0.94635 0.92924 0.82753 1.21551 0.97081 1.31842 1.06537 0.95415 1.25857 0.96716 0.97260 0.99053 1.70051 1.17393 1.46647 1.24492 0.85723 0.80523 0.78954 0.77794 1.20413 1.19990 1.16109 1.21225 0.77249 0.86769 0.86370 1.90648 1.46866 1.20436 1.87806 1.22238 1.05006 0.93625 0.87533 1.63190 1.14092 1.44925 1.02898 1.22539 0.87573 1.01172 0.95669 1.23129 0.98234 1.02760 0.94276 1.22042 0.94981 0.94773 0.84575 0.88553 1.45799 1.59432 1.18790 1.10082 1.21104 0.79156 0.88295 0.84831 1.90807 1.45729 1.20667 1.83369 1.21360 0.72464 0.83544 0.97869 1.22709 1.07163 1.01299 0.92842 1.93077 1.49600 1.76301 1.97549 1.93098 1.51922 1.74522 1.97396 1.23314 0.98831 1.00033 0.85929 0.91673 0.93750 0.88709 0.91244 0.88552 0.93539 0.96714 0.92340 0.90038 0.84602 0.92476 0.94297 0.89841 0.90931 0.74035 0.87879 0.87023 0.88519 0.87328 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 71.98 0.74 -2.46 16 2 C 0.10 2.67 5.93 86.38 0.51 3.19 16 3 N -0.60 -23.77 2.46 -826.17 -2.03 -25.80 16 4 C 0.23 11.08 4.23 85.63 0.36 11.44 16 5 C -0.53 -31.39 9.94 25.60 0.25 -31.14 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 7 C 0.01 0.53 5.47 84.65 0.46 1.00 16 8 N -0.95 -60.26 13.96 21.45 0.30 -59.97 16 9 Si 0.95 45.05 27.47 68.60 1.88 46.94 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 13 C 0.50 19.50 7.32 87.66 0.64 20.14 16 14 O -0.58 -29.11 15.13 -3.03 -0.05 -29.15 16 15 C 0.05 1.18 3.58 85.55 0.31 1.49 16 16 N -0.53 -13.59 4.85 -890.09 -4.32 -17.91 16 17 C 0.06 1.74 5.64 86.65 0.49 2.22 16 18 C -0.14 -3.21 6.64 31.78 0.21 -2.99 16 19 C 0.14 2.53 3.31 46.38 0.15 2.69 16 20 H 0.10 2.07 7.73 -2.39 -0.02 2.05 16 21 N -0.69 -9.58 5.16 -435.99 -2.25 -11.83 16 22 C 0.48 8.43 7.23 87.66 0.63 9.06 16 23 O -0.53 -12.85 15.84 -3.04 -0.05 -12.90 16 24 C 0.29 3.82 2.47 29.85 0.07 3.89 16 25 C -0.18 -1.69 8.92 71.98 0.64 -1.05 16 26 F -0.18 -2.19 16.51 44.97 0.74 -1.45 16 27 F -0.19 -3.04 17.05 44.97 0.77 -2.27 16 28 C 0.05 0.72 6.31 86.77 0.55 1.26 16 29 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 33 H 0.10 2.00 6.44 -2.39 -0.02 1.99 16 34 H 0.05 2.09 7.13 -2.38 -0.02 2.08 16 35 H 0.01 0.78 6.85 -2.39 -0.02 0.77 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.08 1.76 7.22 -2.39 -0.02 1.75 16 38 H 0.14 2.41 7.11 -2.38 -0.02 2.40 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.04 1.30 7.32 -2.39 -0.02 1.28 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.42 3.57 8.07 -92.71 -0.75 2.82 16 44 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 47 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.08 0.83 7.67 -2.39 -0.02 0.81 16 Total: -1.00 -83.30 396.60 1.20 -82.10 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.17 Total: 13.49 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.03 Total: 18.74 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -8.30 Total: -115.50 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.09 Total: -42.05 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 1.51 Total: -3.71 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.94 kcal Total: -83.30 1.20 -82.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001402160470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.362 kcal (2) G-P(sol) polarization free energy of solvation -83.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds