Wall clock time and date at job start Wed Apr 1 2020 04:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.46959 * 2 1 4 4 C 1.46499 * 119.99917 * 269.99847 * 3 2 1 5 5 C 1.50699 * 109.47041 * 270.00264 * 4 3 2 6 6 H 1.08006 * 120.00494 * 359.97438 * 5 4 3 7 7 C 1.37885 * 120.00140 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99755 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47444 * 59.99591 * 9 7 5 11 11 H 1.48495 * 109.47080 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47054 * 299.99545 * 9 7 5 13 13 C 1.34773 * 120.00016 * 89.99849 * 3 2 1 14 14 O 1.21284 * 120.00112 * 179.97438 * 13 3 2 15 15 C 1.50705 * 120.00058 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46943 * 179.97438 * 15 13 3 17 17 C 1.47964 * 111.00124 * 189.99783 * 16 15 13 18 18 C 1.53930 * 86.18111 * 222.41737 * 17 16 15 19 19 C 1.53006 * 113.73342 * 138.07935 * 18 17 16 20 20 H 1.08998 * 109.46505 * 299.99517 * 19 18 17 21 21 C 1.52997 * 109.47127 * 59.99646 * 19 18 17 22 22 N 1.46500 * 109.47249 * 180.02562 * 19 18 17 23 23 C 1.34768 * 120.00056 * 154.99998 * 22 19 18 24 24 O 1.21278 * 120.00079 * 359.97438 * 23 22 19 25 25 C 1.50705 * 120.00177 * 179.97438 * 23 22 19 26 26 F 1.39898 * 109.47204 * 184.99734 * 25 23 22 27 27 F 1.39891 * 109.47159 * 305.00591 * 25 23 22 28 28 C 1.47962 * 111.00253 * 90.63687 * 16 15 13 29 29 H 1.09000 * 109.47574 * 60.00318 * 1 2 3 30 30 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47672 * 299.99978 * 1 2 3 32 32 H 1.09001 * 109.46994 * 239.99702 * 2 1 3 33 33 H 1.09004 * 109.47084 * 119.99630 * 2 1 3 34 34 H 1.08999 * 109.47341 * 29.99622 * 4 3 2 35 35 H 1.08999 * 109.47165 * 150.00282 * 4 3 2 36 36 H 0.96998 * 120.00502 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47199 * 60.00180 * 15 13 3 38 38 H 1.08992 * 109.46668 * 299.99529 * 15 13 3 39 39 H 1.09002 * 113.75767 * 108.09711 * 17 16 15 40 40 H 1.09004 * 113.75675 * 336.73674 * 17 16 15 41 41 H 1.09002 * 113.73766 * 269.25024 * 18 17 16 42 42 H 1.09002 * 109.47153 * 180.02562 * 21 19 18 43 43 H 1.09001 * 109.46832 * 60.00321 * 21 19 18 44 44 H 1.09004 * 109.47261 * 300.00303 * 21 19 18 45 45 H 0.97001 * 119.99547 * 334.99826 * 22 19 18 46 46 H 1.09002 * 109.46473 * 65.00233 * 25 23 22 47 47 H 1.09003 * 113.75515 * 23.26231 * 28 16 15 48 48 H 1.08994 * 113.76563 * 251.90244 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9138 2.0974 -3.4163 10 1 6.1417 0.6409 -3.5941 11 1 6.1613 2.7973 -4.7024 12 1 6.8408 2.6208 -2.3811 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2059 3.5888 17 6 2.3077 1.4758 4.8758 18 6 1.5648 2.6963 5.4485 19 6 0.4129 2.3315 6.3871 20 1 -0.3190 1.7305 5.8474 21 6 0.9552 1.5313 7.5730 22 7 -0.2261 3.5562 6.8750 23 6 -1.5114 3.5305 7.2794 24 8 -2.1393 2.4937 7.2390 25 6 -2.1686 4.7902 7.7818 26 9 -3.4541 4.4922 8.2465 27 9 -1.4084 5.3284 8.8256 28 6 1.1197 2.9801 4.0024 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6754 3.5170 -4.4435 37 1 2.6227 0.4188 2.5299 38 1 0.9444 1.0115 2.5302 39 1 3.3012 1.3279 5.2992 40 1 1.7099 0.5644 4.8622 41 1 2.2258 3.4574 5.8632 42 1 0.1345 1.2710 8.2414 43 1 1.6870 2.1324 8.1126 44 1 1.4303 0.6200 7.2096 45 1 0.2759 4.3855 6.9069 46 1 -2.2347 5.5142 6.9696 47 1 0.1744 2.5087 3.7334 48 1 1.1639 4.0340 3.7281 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001403284436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:52 Heat of formation + Delta-G solvation = -132.002741 kcal Electronic energy + Delta-G solvation = -30926.400824 eV Core-core repulsion = 26267.600446 eV Total energy + Delta-G solvation = -4658.800378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.63335 -47.65849 -40.87397 -39.80270 -38.57356 -35.87221 -35.18272 -32.85516 -32.19015 -30.22098 -29.92812 -28.27704 -27.26495 -26.26669 -25.18734 -23.13249 -22.96104 -21.88747 -21.23525 -20.17834 -18.85508 -18.36910 -18.18981 -17.91273 -16.73060 -16.66431 -16.33080 -16.06204 -15.74841 -15.32700 -15.15737 -14.90551 -14.59703 -14.43910 -14.06094 -13.99700 -13.99114 -13.83934 -13.39965 -13.38217 -12.98929 -12.94397 -12.73806 -12.60854 -12.45732 -12.23482 -12.03317 -11.67854 -11.63227 -11.27128 -11.15479 -11.06179 -10.94980 -10.90214 -10.70621 -10.51157 -10.39981 -10.11631 -9.75468 -9.63463 -9.06919 -8.57876 -8.42287 -7.63554 -6.03245 -4.07740 1.65610 2.06941 3.31900 3.32220 3.36627 3.38262 3.46506 3.54861 3.57893 3.99703 4.06140 4.12462 4.21948 4.25844 4.45990 4.73851 4.86754 4.88444 5.00959 5.08665 5.15356 5.22984 5.24686 5.28380 5.31467 5.43004 5.47061 5.49456 5.60938 5.65561 5.73336 5.76831 5.78868 5.99021 6.01171 6.20874 6.25717 6.44303 6.69391 6.81599 7.11872 7.35769 7.45488 7.57694 7.93622 8.25230 8.45644 8.92359 9.16031 9.57347 11.04799 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.001990 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.891964 B =14065.441544 C =14106.517122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.001 3.999 16 N -0.452 5.452 17 C 0.013 3.987 18 C -0.126 4.126 19 C 0.149 3.851 20 H 0.093 0.907 21 C -0.163 4.163 22 N -0.705 5.705 23 C 0.473 3.527 24 O -0.502 6.502 25 C 0.257 3.743 26 F -0.176 7.176 27 F -0.188 7.188 28 C 0.014 3.986 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.408 0.592 46 H 0.139 0.861 47 H 0.069 0.931 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -2.079 23.144 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.397 6.397 15 C -0.131 4.131 16 N -0.174 5.174 17 C -0.117 4.117 18 C -0.145 4.145 19 C 0.045 3.955 20 H 0.111 0.889 21 C -0.222 4.222 22 N -0.358 5.358 23 C 0.254 3.746 24 O -0.375 6.375 25 C 0.200 3.800 26 F -0.157 7.157 27 F -0.170 7.170 28 C -0.115 4.115 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.243 0.757 46 H 0.156 0.844 47 H 0.087 0.913 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.017 -1.784 22.695 24.485 hybrid contribution 0.416 -0.313 -0.198 0.557 sum -8.601 -2.097 22.497 24.176 Atomic orbital electron populations 1.22224 0.96931 1.01355 1.02190 1.21387 0.93364 0.84438 1.02549 1.48277 1.64278 1.13180 1.07745 1.19226 0.96183 0.93557 0.78103 1.21404 0.96941 1.31847 1.06180 0.92573 1.24936 0.97831 0.94948 0.96422 1.69918 1.35731 1.33472 1.14377 0.86562 0.84873 0.78212 0.77799 1.20289 1.21204 1.20162 1.20040 0.78983 0.87136 0.84531 1.90667 1.44411 1.17825 1.86837 1.22707 1.00828 0.96860 0.92698 1.68414 1.32780 1.15803 1.00421 1.23970 1.01262 0.95318 0.91136 1.23338 0.96627 0.99955 0.94581 1.21202 0.94234 0.85166 0.94899 0.88910 1.22155 1.01578 1.00438 0.97990 1.45998 1.11398 1.13862 1.64515 1.21058 0.83235 0.90480 0.79781 1.90830 1.62989 1.31105 1.52625 1.21678 0.76093 0.94519 0.87747 1.93070 1.38094 1.94407 1.90133 1.93060 1.75693 1.86976 1.61234 1.24061 0.92958 1.01831 0.92680 0.91976 0.92190 0.93373 0.89933 0.92023 0.95144 0.94026 0.92697 0.88566 0.91642 0.88686 0.90976 0.87314 0.92042 0.91916 0.90894 0.75658 0.84382 0.91304 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.55 2.46 -175.06 -0.43 -12.98 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.46 16 5 C -0.52 -14.92 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.43 7.72 -10.98 -0.08 10.35 16 14 O -0.52 -13.20 16.01 5.55 0.09 -13.11 16 15 C 0.00 0.01 3.83 -4.97 -0.02 -0.01 16 16 N -0.45 -6.04 5.65 -239.74 -1.35 -7.40 16 17 C 0.01 0.11 6.57 -2.77 -0.02 0.09 16 18 C -0.13 -0.96 3.49 -89.69 -0.31 -1.27 16 19 C 0.15 1.04 2.41 -67.93 -0.16 0.88 16 20 H 0.09 0.80 7.37 -51.93 -0.38 0.42 16 21 C -0.16 -1.06 9.29 37.16 0.35 -0.71 16 22 N -0.71 -4.34 5.08 -53.81 -0.27 -4.61 16 23 C 0.47 3.90 7.60 -10.99 -0.08 3.82 16 24 O -0.50 -6.22 16.28 5.56 0.09 -6.13 16 25 C 0.26 1.57 5.72 36.01 0.21 1.78 16 26 F -0.18 -1.62 16.95 2.25 0.04 -1.59 16 27 F -0.19 -1.27 17.32 2.25 0.04 -1.23 16 28 C 0.01 0.15 7.51 -2.77 -0.02 0.13 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.10 1.24 7.34 -51.93 -0.38 0.86 16 38 H 0.07 0.79 6.42 -51.93 -0.33 0.46 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 41 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.41 7.43 -51.93 -0.39 0.03 16 45 H 0.41 1.52 8.60 -40.82 -0.35 1.17 16 46 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -37.08 404.99 -7.71 -44.79 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -7.48 Total: -2.55 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.24 Total: 7.73 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -1.32 Total: -50.95 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.18 Total: -19.24 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.08 -7.71 -44.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001403284436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.212 kcal (2) G-P(sol) polarization free energy of solvation -37.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds