Wall clock time and date at job start Wed Apr 1 2020 04:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.46959 * 2 1 4 4 C 1.46499 * 119.99917 * 269.99847 * 3 2 1 5 5 C 1.50699 * 109.47041 * 270.00264 * 4 3 2 6 6 H 1.08006 * 120.00494 * 359.97438 * 5 4 3 7 7 C 1.37885 * 120.00140 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99755 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47444 * 59.99591 * 9 7 5 11 11 H 1.48495 * 109.47080 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47054 * 299.99545 * 9 7 5 13 13 C 1.34773 * 120.00016 * 89.99849 * 3 2 1 14 14 O 1.21284 * 120.00112 * 179.97438 * 13 3 2 15 15 C 1.50705 * 120.00058 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46943 * 179.97438 * 15 13 3 17 17 C 1.47964 * 111.00124 * 189.99783 * 16 15 13 18 18 C 1.53930 * 86.18111 * 222.41737 * 17 16 15 19 19 C 1.53006 * 113.73342 * 138.07935 * 18 17 16 20 20 H 1.08998 * 109.46505 * 299.99517 * 19 18 17 21 21 C 1.52997 * 109.47127 * 59.99646 * 19 18 17 22 22 N 1.46500 * 109.47249 * 180.02562 * 19 18 17 23 23 C 1.34768 * 120.00056 * 154.99998 * 22 19 18 24 24 O 1.21278 * 120.00079 * 359.97438 * 23 22 19 25 25 C 1.50705 * 120.00177 * 179.97438 * 23 22 19 26 26 F 1.39898 * 109.47204 * 184.99734 * 25 23 22 27 27 F 1.39891 * 109.47159 * 305.00591 * 25 23 22 28 28 C 1.47962 * 111.00253 * 90.63687 * 16 15 13 29 29 H 1.09000 * 109.47574 * 60.00318 * 1 2 3 30 30 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47672 * 299.99978 * 1 2 3 32 32 H 1.09001 * 109.46994 * 239.99702 * 2 1 3 33 33 H 1.09004 * 109.47084 * 119.99630 * 2 1 3 34 34 H 1.08999 * 109.47341 * 29.99622 * 4 3 2 35 35 H 1.08999 * 109.47165 * 150.00282 * 4 3 2 36 36 H 0.96998 * 120.00502 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47199 * 60.00180 * 15 13 3 38 38 H 1.08992 * 109.46668 * 299.99529 * 15 13 3 39 39 H 1.09002 * 113.75767 * 108.09711 * 17 16 15 40 40 H 1.09004 * 113.75675 * 336.73674 * 17 16 15 41 41 H 1.09002 * 113.73766 * 269.25024 * 18 17 16 42 42 H 1.09002 * 109.47153 * 180.02562 * 21 19 18 43 43 H 1.09001 * 109.46832 * 60.00321 * 21 19 18 44 44 H 1.09004 * 109.47261 * 300.00303 * 21 19 18 45 45 H 0.97001 * 119.99547 * 334.99826 * 22 19 18 46 46 H 1.09002 * 109.46473 * 65.00233 * 25 23 22 47 47 H 1.09003 * 113.75515 * 23.26231 * 28 16 15 48 48 H 1.08994 * 113.76563 * 251.90244 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9138 2.0974 -3.4163 10 1 6.1417 0.6409 -3.5941 11 1 6.1613 2.7973 -4.7024 12 1 6.8408 2.6208 -2.3811 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2059 3.5888 17 6 2.3077 1.4758 4.8758 18 6 1.5648 2.6963 5.4485 19 6 0.4129 2.3315 6.3871 20 1 -0.3190 1.7305 5.8474 21 6 0.9552 1.5313 7.5730 22 7 -0.2261 3.5562 6.8750 23 6 -1.5114 3.5305 7.2794 24 8 -2.1393 2.4937 7.2390 25 6 -2.1686 4.7902 7.7818 26 9 -3.4541 4.4922 8.2465 27 9 -1.4084 5.3284 8.8256 28 6 1.1197 2.9801 4.0024 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6754 3.5170 -4.4435 37 1 2.6227 0.4188 2.5299 38 1 0.9444 1.0115 2.5302 39 1 3.3012 1.3279 5.2992 40 1 1.7099 0.5644 4.8622 41 1 2.2258 3.4574 5.8632 42 1 0.1345 1.2710 8.2414 43 1 1.6870 2.1324 8.1126 44 1 1.4303 0.6200 7.2096 45 1 0.2759 4.3855 6.9069 46 1 -2.2347 5.5142 6.9696 47 1 0.1744 2.5087 3.7334 48 1 1.1639 4.0340 3.7281 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001403284436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:48 Heat of formation + Delta-G solvation = -160.704626 kcal Electronic energy + Delta-G solvation = -30927.645431 eV Core-core repulsion = 26267.600446 eV Total energy + Delta-G solvation = -4660.044985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -50.18027 -48.22313 -41.69424 -40.73349 -39.91937 -36.91202 -36.51089 -34.92446 -32.98665 -31.68153 -30.96521 -28.99068 -28.79505 -27.11865 -26.30115 -24.75286 -24.11287 -22.99096 -21.87380 -20.87597 -19.96300 -19.26018 -18.79733 -18.62163 -18.53167 -17.94136 -17.40287 -17.27658 -16.68232 -16.59276 -16.16303 -16.01986 -15.76907 -15.31836 -15.12944 -15.01215 -14.70471 -14.56809 -14.50875 -14.37315 -14.21075 -13.96163 -13.71578 -13.61181 -13.45629 -13.25124 -13.17531 -13.10273 -12.81055 -12.76078 -12.61948 -12.51145 -12.18436 -11.98956 -11.85946 -11.77797 -11.70700 -11.67769 -11.06113 -10.64504 -10.54263 -10.37096 -9.66010 -9.39799 -8.22226 -6.37173 1.03503 1.35750 1.40325 1.47567 1.52184 1.90055 2.25687 2.41507 2.87623 2.98966 3.06755 3.07672 3.35624 3.56867 3.60576 3.74534 3.77503 4.05808 4.10304 4.13402 4.23819 4.31968 4.38085 4.42457 4.43587 4.48819 4.61669 4.72526 4.76121 4.84496 4.93290 4.93714 4.97530 5.04512 5.11798 5.21220 5.26735 5.36251 5.38754 5.41879 5.58155 5.85868 6.00052 6.07449 6.16261 6.71134 6.81839 6.85634 7.29384 7.57141 8.84538 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.001990 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.891964 B =14065.441544 C =14106.517122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.496 3.504 14 O -0.583 6.583 15 C 0.017 3.983 16 N -0.492 5.492 17 C 0.019 3.981 18 C -0.101 4.101 19 C 0.154 3.846 20 H 0.080 0.920 21 C -0.159 4.159 22 N -0.693 5.693 23 C 0.471 3.529 24 O -0.549 6.549 25 C 0.259 3.741 26 F -0.195 7.195 27 F -0.191 7.191 28 C 0.008 3.992 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.019 0.981 35 H -0.007 1.007 36 H 0.267 0.733 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.422 0.578 46 H 0.186 0.814 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 -3.685 24.819 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.341 5.341 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.284 3.716 14 O -0.462 6.462 15 C -0.114 4.114 16 N -0.215 5.215 17 C -0.109 4.109 18 C -0.120 4.120 19 C 0.050 3.950 20 H 0.098 0.902 21 C -0.217 4.217 22 N -0.345 5.345 23 C 0.254 3.746 24 O -0.427 6.427 25 C 0.203 3.797 26 F -0.177 7.177 27 F -0.172 7.172 28 C -0.121 4.121 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.037 0.963 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.136 0.864 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.259 0.741 46 H 0.203 0.797 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.256 -3.418 24.395 25.980 hybrid contribution 0.173 0.215 -0.718 0.770 sum -8.083 -3.203 23.676 25.222 Atomic orbital electron populations 1.22149 0.94748 1.03442 1.01486 1.21721 0.95132 0.81478 1.03869 1.48325 1.64375 1.15107 1.06263 1.18637 0.95182 0.91348 0.80551 1.21682 0.97892 1.31950 1.06457 0.92951 1.25883 1.02462 0.94498 0.96467 1.70044 1.37847 1.34230 1.14815 0.85469 0.78976 0.79058 0.77327 1.18381 1.20336 1.20340 1.21253 0.77319 0.86718 0.86263 1.90625 1.47067 1.20656 1.87877 1.22604 1.02841 0.96594 0.89335 1.68365 1.34151 1.17160 1.01784 1.24083 1.02429 0.96073 0.88341 1.23138 0.96435 0.99723 0.92692 1.21097 0.93597 0.85338 0.94985 0.90206 1.22115 1.01199 1.01042 0.97322 1.45945 1.10919 1.14384 1.63292 1.21447 0.83404 0.90584 0.79205 1.90809 1.64115 1.32906 1.54838 1.22006 0.74759 0.94413 0.88568 1.93028 1.39534 1.94607 1.90482 1.93055 1.75693 1.86815 1.61623 1.24075 0.92602 1.00477 0.94931 0.94438 0.88606 0.92363 0.91116 0.88152 0.96273 0.98889 0.92426 0.86395 0.88900 0.87635 0.88892 0.86301 0.93728 0.90846 0.89639 0.74051 0.79744 0.90865 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.24 71.98 0.74 -3.13 16 2 C 0.10 2.99 5.93 86.38 0.51 3.50 16 3 N -0.61 -25.77 2.46 -826.16 -2.03 -27.80 16 4 C 0.26 14.51 5.16 85.63 0.44 14.95 16 5 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.33 5.46 84.66 0.46 0.79 16 8 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 9 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 C 0.50 20.59 7.72 87.66 0.68 21.26 16 14 O -0.58 -30.78 16.01 -3.04 -0.05 -30.83 16 15 C 0.02 0.46 3.83 85.56 0.33 0.79 16 16 N -0.49 -12.33 5.65 -912.40 -5.15 -17.48 16 17 C 0.02 0.27 6.57 86.40 0.57 0.84 16 18 C -0.10 -1.29 3.49 -10.15 -0.04 -1.32 16 19 C 0.15 1.83 2.41 44.99 0.11 1.94 16 20 H 0.08 1.23 7.37 -2.39 -0.02 1.22 16 21 C -0.16 -1.66 9.29 71.98 0.67 -1.00 16 22 N -0.69 -7.26 5.08 -442.54 -2.25 -9.51 16 23 C 0.47 7.22 7.60 87.66 0.67 7.89 16 24 O -0.55 -13.47 16.28 -3.02 -0.05 -13.52 16 25 C 0.26 2.76 5.72 71.24 0.41 3.16 16 26 F -0.20 -3.47 16.95 44.97 0.76 -2.71 16 27 F -0.19 -2.24 17.32 44.97 0.78 -1.46 16 28 C 0.01 0.16 7.51 86.41 0.65 0.81 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 32 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 33 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 34 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 35 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.12 2.61 7.34 -2.39 -0.02 2.59 16 38 H 0.09 1.95 6.42 -2.39 -0.02 1.93 16 39 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 0.98 7.85 -2.39 -0.02 0.96 16 41 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.69 7.43 -2.38 -0.02 0.67 16 45 H 0.42 2.17 8.60 -92.71 -0.80 1.37 16 46 H 0.19 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.07 1.43 7.29 -2.39 -0.02 1.41 16 48 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -86.72 404.99 0.93 -85.79 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.18 Total: 7.78 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 6.43 Total: 19.08 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -9.15 Total: -111.49 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.10 Total: -44.35 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 1.54 Total: -4.17 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -86.72 0.93 -85.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001403284436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.916 kcal (2) G-P(sol) polarization free energy of solvation -86.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds