Wall clock time and date at job start Wed Apr 1 2020 04:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47266 * 2 1 4 4 C 1.46501 * 119.99930 * 270.00360 * 3 2 1 5 5 C 1.50703 * 109.47049 * 269.99787 * 4 3 2 6 6 H 1.08004 * 120.00098 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00192 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99570 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99906 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47053 * 90.00228 * 9 7 5 11 11 H 1.48497 * 109.47023 * 209.99980 * 9 7 5 12 12 H 1.48500 * 109.47212 * 330.00164 * 9 7 5 13 13 C 1.34777 * 120.00035 * 90.00142 * 3 2 1 14 14 O 1.21285 * 119.99675 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99999 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47496 * 180.02562 * 15 13 3 17 17 C 1.47955 * 111.00282 * 169.99990 * 16 15 13 18 18 C 1.53939 * 86.17885 * 222.41897 * 17 16 15 19 19 N 1.46497 * 113.73628 * 138.08202 * 18 17 16 20 20 C 1.34772 * 120.00172 * 154.99603 * 19 18 17 21 21 O 1.21556 * 120.00081 * 0.02562 * 20 19 18 22 22 C 1.47830 * 120.00193 * 180.02562 * 20 19 18 23 23 C 1.39951 * 120.94307 * 180.02562 * 22 20 19 24 24 N 1.32141 * 118.92451 * 180.25398 * 23 22 20 25 25 C 1.31876 * 120.97043 * 359.43062 * 24 23 22 26 26 N 1.31871 * 122.09208 * 0.58676 * 25 24 23 27 27 C 1.32151 * 120.96434 * 359.70922 * 26 25 24 28 28 C 1.47961 * 110.99981 * 70.63828 * 16 15 13 29 29 H 1.08998 * 109.47276 * 60.00074 * 1 2 3 30 30 H 1.09001 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47018 * 299.99522 * 1 2 3 32 32 H 1.09006 * 109.47100 * 239.99662 * 2 1 3 33 33 H 1.08998 * 109.47276 * 119.99926 * 2 1 3 34 34 H 1.09000 * 109.47355 * 29.99475 * 4 3 2 35 35 H 1.08995 * 109.47398 * 149.99938 * 4 3 2 36 36 H 0.97003 * 119.99104 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47135 * 60.00005 * 15 13 3 38 38 H 1.09004 * 109.47429 * 300.00342 * 15 13 3 39 39 H 1.09001 * 113.76132 * 108.10259 * 17 16 15 40 40 H 1.09003 * 113.75844 * 336.73032 * 17 16 15 41 41 H 1.09007 * 113.72747 * 269.25571 * 18 17 16 42 42 H 0.96996 * 119.99494 * 335.00219 * 19 18 17 43 43 H 1.08002 * 120.53331 * 359.96987 * 23 22 20 44 44 H 1.07992 * 118.95615 * 180.31617 * 25 24 23 45 45 H 1.08007 * 120.53592 * 179.97438 * 27 26 25 46 46 H 1.09005 * 113.76006 * 23.26695 * 28 16 15 47 47 H 1.09005 * 113.75775 * 251.90978 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8781 8 7 3.3490 3.1256 -3.6181 9 14 5.9135 2.0966 -3.4169 10 1 5.9775 0.8752 -4.2592 11 1 6.3920 3.2637 -4.2004 12 1 6.7736 1.9178 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9924 1.3059 2.4722 16 7 2.3100 2.2061 3.5889 17 6 1.8545 1.6358 4.8759 18 6 1.3659 3.0558 5.2143 19 7 0.0531 3.0885 5.8637 20 6 -0.2830 4.1287 6.6519 21 8 0.5029 5.0400 6.8237 22 6 -1.6075 4.1615 7.3077 23 6 -1.9772 5.2322 8.1297 24 7 -3.1691 5.2181 8.7000 25 6 -4.0079 4.2214 8.4950 26 7 -3.7003 3.1934 7.7284 27 6 -2.5275 3.1231 7.1235 28 6 1.3114 3.2928 3.6944 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6751 3.5161 -4.4440 37 1 2.6230 0.4187 2.5298 38 1 0.9446 1.0113 2.5302 39 1 2.6667 1.2871 5.5137 40 1 1.0500 0.9074 4.7732 41 1 2.1096 3.6646 5.7286 42 1 -0.5741 2.3615 5.7264 43 1 -1.2975 6.0543 8.2988 44 1 -4.9757 4.2456 8.9734 45 1 -2.2827 2.2777 6.4975 46 1 0.3481 3.0491 3.2462 47 1 1.6897 4.2681 3.3881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001404753292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:58 Heat of formation + Delta-G solvation = 29.340598 kcal Electronic energy + Delta-G solvation = -29695.962964 eV Core-core repulsion = 25494.848145 eV Total energy + Delta-G solvation = -4201.114820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.76423 -40.70813 -39.37380 -38.36873 -35.30519 -34.82626 -34.11787 -32.90427 -32.70561 -30.34852 -30.03626 -27.27267 -26.31078 -26.03658 -25.18236 -24.35440 -23.06550 -22.33129 -21.35347 -20.51559 -18.63677 -18.51408 -18.20044 -17.64543 -16.74210 -16.70606 -16.36807 -15.85965 -15.80916 -15.33280 -15.10549 -14.92877 -14.49073 -14.33925 -14.20613 -14.04658 -13.98215 -13.45540 -13.11977 -12.92365 -12.70825 -12.61729 -12.21514 -12.06737 -11.88622 -11.67483 -11.56472 -11.50629 -11.21328 -10.99642 -10.89928 -10.74960 -10.53519 -10.45136 -10.33885 -10.13118 -9.90889 -9.63766 -9.49433 -9.07715 -8.72850 -8.43803 -7.68137 -6.04658 -4.09136 -0.16131 0.42091 2.32208 2.49741 3.23605 3.29936 3.35512 3.37829 3.41673 3.43804 3.54953 3.61686 3.82176 3.94498 4.08378 4.28120 4.34624 4.45321 4.55722 4.71286 4.92534 4.93361 5.09594 5.13532 5.15813 5.26207 5.29901 5.38157 5.46244 5.55920 5.62685 5.64837 5.68282 5.88821 5.94381 6.03615 6.16538 6.22107 6.23976 6.39270 6.74464 6.92201 7.07239 7.37502 7.42730 7.53647 7.64364 7.92011 8.23115 8.39911 8.90313 9.09394 9.56078 11.03420 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.001951 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.863760 B =14349.403226 C =14769.799280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.523 6.523 15 C 0.004 3.996 16 N -0.451 5.451 17 C -0.007 4.007 18 C 0.117 3.883 19 N -0.714 5.714 20 C 0.570 3.430 21 O -0.521 6.521 22 C -0.242 4.242 23 C 0.210 3.790 24 N -0.521 5.521 25 C 0.315 3.685 26 N -0.522 5.522 27 C 0.184 3.816 28 C 0.005 3.995 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.130 0.870 42 H 0.399 0.601 43 H 0.184 0.816 44 H 0.203 0.797 45 H 0.171 0.829 46 H 0.070 0.930 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.559 -6.211 22.944 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.291 3.709 14 O -0.398 6.398 15 C -0.128 4.128 16 N -0.174 5.174 17 C -0.137 4.137 18 C 0.012 3.988 19 N -0.365 5.365 20 C 0.355 3.645 21 O -0.397 6.397 22 C -0.249 4.249 23 C 0.044 3.956 24 N -0.234 5.234 25 C 0.028 3.972 26 N -0.235 5.235 27 C 0.017 3.983 28 C -0.125 4.125 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.148 0.852 42 H 0.234 0.766 43 H 0.200 0.800 44 H 0.220 0.780 45 H 0.188 0.812 46 H 0.088 0.912 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.972 -4.652 23.203 27.482 hybrid contribution 0.521 -1.065 -1.057 1.589 sum -13.450 -5.717 22.146 26.534 Atomic orbital electron populations 1.22220 0.96929 1.01351 1.02150 1.21403 0.93353 0.84397 1.02669 1.48265 1.64066 1.13188 1.07714 1.19247 0.96269 0.93571 0.78017 1.21433 0.96922 1.31880 1.06156 0.92469 1.24942 0.97877 0.94920 0.96439 1.69933 1.35711 1.33452 1.14335 0.86493 0.84704 0.77633 0.78587 1.20689 1.21095 1.19849 1.20026 0.79115 0.87153 0.84645 1.90689 1.44522 1.17796 1.86824 1.22686 1.00586 0.97403 0.92101 1.68442 1.42460 1.06527 0.99958 1.24458 1.00068 0.95547 0.93584 1.23202 0.84532 0.97912 0.93194 1.45944 1.18289 1.23305 1.48990 1.17795 0.85628 0.82522 0.78516 1.90842 1.51193 1.35982 1.61676 1.21846 0.97912 1.00104 1.05058 1.23587 0.91607 0.94996 0.85451 1.68612 1.03921 1.27609 1.23265 1.25335 0.98745 0.83707 0.89373 1.68494 1.19043 1.26420 1.09528 1.23477 0.87567 0.95558 0.91738 1.24397 0.95002 0.99306 0.93783 0.91969 0.92159 0.93439 0.89866 0.91917 0.95109 0.93980 0.92741 0.88072 0.91975 0.88104 0.90855 0.85201 0.76611 0.79956 0.78025 0.81199 0.91187 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.11 1.59 5.93 -4.04 -0.02 1.57 16 3 N -0.60 -12.20 2.46 -175.06 -0.43 -12.63 16 4 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 5 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 10.12 7.48 -10.99 -0.08 10.04 16 14 O -0.52 -12.97 15.13 5.55 0.08 -12.88 16 15 C 0.00 0.06 3.86 -4.98 -0.02 0.04 16 16 N -0.45 -6.04 5.95 -239.91 -1.43 -7.47 16 17 C -0.01 -0.06 7.73 -2.77 -0.02 -0.08 16 18 C 0.12 1.12 4.43 -69.64 -0.31 0.81 16 19 N -0.71 -5.18 5.32 -55.90 -0.30 -5.47 16 20 C 0.57 5.28 7.79 -12.34 -0.10 5.18 16 21 O -0.52 -6.80 16.04 5.32 0.09 -6.71 16 22 C -0.24 -1.81 5.91 -104.69 -0.62 -2.43 16 23 C 0.21 1.67 10.88 -16.78 -0.18 1.49 16 24 N -0.52 -4.16 10.42 -14.24 -0.15 -4.31 16 25 C 0.31 2.05 12.27 -92.02 -1.13 0.92 16 26 N -0.52 -3.70 10.42 -14.24 -0.15 -3.85 16 27 C 0.18 1.10 10.81 -16.77 -0.18 0.92 16 28 C 0.00 0.06 6.56 -2.77 -0.02 0.04 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.53 7.22 -51.93 -0.38 0.16 16 32 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.10 1.26 7.40 -51.93 -0.38 0.87 16 38 H 0.06 0.68 6.73 -51.93 -0.35 0.33 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.44 7.77 -51.93 -0.40 0.04 16 41 H 0.13 1.47 7.46 -51.93 -0.39 1.08 16 42 H 0.40 1.63 6.87 -40.82 -0.28 1.35 16 43 H 0.18 1.31 7.74 -52.49 -0.41 0.90 16 44 H 0.20 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.17 0.46 6.54 -52.48 -0.34 0.11 16 46 H 0.07 0.83 7.78 -51.93 -0.40 0.42 16 47 H 0.10 1.64 8.09 -51.93 -0.42 1.22 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -37.36 395.99 -9.89 -47.25 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.55 Total: -0.62 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -2.75 Total: 9.65 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -1.71 Total: -59.62 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.17 Total: -19.59 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.36 -9.89 -47.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001404753292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.595 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds