Wall clock time and date at job start Wed Apr 1 2020 04:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47266 * 2 1 4 4 C 1.46501 * 119.99930 * 270.00360 * 3 2 1 5 5 C 1.50703 * 109.47049 * 269.99787 * 4 3 2 6 6 H 1.08004 * 120.00098 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00192 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99570 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99906 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47053 * 90.00228 * 9 7 5 11 11 H 1.48497 * 109.47023 * 209.99980 * 9 7 5 12 12 H 1.48500 * 109.47212 * 330.00164 * 9 7 5 13 13 C 1.34777 * 120.00035 * 90.00142 * 3 2 1 14 14 O 1.21285 * 119.99675 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99999 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47496 * 180.02562 * 15 13 3 17 17 C 1.47955 * 111.00282 * 169.99990 * 16 15 13 18 18 C 1.53939 * 86.17885 * 222.41897 * 17 16 15 19 19 N 1.46497 * 113.73628 * 138.08202 * 18 17 16 20 20 C 1.34772 * 120.00172 * 154.99603 * 19 18 17 21 21 O 1.21556 * 120.00081 * 0.02562 * 20 19 18 22 22 C 1.47830 * 120.00193 * 180.02562 * 20 19 18 23 23 C 1.39951 * 120.94307 * 180.02562 * 22 20 19 24 24 N 1.32141 * 118.92451 * 180.25398 * 23 22 20 25 25 C 1.31876 * 120.97043 * 359.43062 * 24 23 22 26 26 N 1.31871 * 122.09208 * 0.58676 * 25 24 23 27 27 C 1.32151 * 120.96434 * 359.70922 * 26 25 24 28 28 C 1.47961 * 110.99981 * 70.63828 * 16 15 13 29 29 H 1.08998 * 109.47276 * 60.00074 * 1 2 3 30 30 H 1.09001 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47018 * 299.99522 * 1 2 3 32 32 H 1.09006 * 109.47100 * 239.99662 * 2 1 3 33 33 H 1.08998 * 109.47276 * 119.99926 * 2 1 3 34 34 H 1.09000 * 109.47355 * 29.99475 * 4 3 2 35 35 H 1.08995 * 109.47398 * 149.99938 * 4 3 2 36 36 H 0.97003 * 119.99104 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47135 * 60.00005 * 15 13 3 38 38 H 1.09004 * 109.47429 * 300.00342 * 15 13 3 39 39 H 1.09001 * 113.76132 * 108.10259 * 17 16 15 40 40 H 1.09003 * 113.75844 * 336.73032 * 17 16 15 41 41 H 1.09007 * 113.72747 * 269.25571 * 18 17 16 42 42 H 0.96996 * 119.99494 * 335.00219 * 19 18 17 43 43 H 1.08002 * 120.53331 * 359.96987 * 23 22 20 44 44 H 1.07992 * 118.95615 * 180.31617 * 25 24 23 45 45 H 1.08007 * 120.53592 * 179.97438 * 27 26 25 46 46 H 1.09005 * 113.76006 * 23.26695 * 28 16 15 47 47 H 1.09005 * 113.75775 * 251.90978 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8781 8 7 3.3490 3.1256 -3.6181 9 14 5.9135 2.0966 -3.4169 10 1 5.9775 0.8752 -4.2592 11 1 6.3920 3.2637 -4.2004 12 1 6.7736 1.9178 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9924 1.3059 2.4722 16 7 2.3100 2.2061 3.5889 17 6 1.8545 1.6358 4.8759 18 6 1.3659 3.0558 5.2143 19 7 0.0531 3.0885 5.8637 20 6 -0.2830 4.1287 6.6519 21 8 0.5029 5.0400 6.8237 22 6 -1.6075 4.1615 7.3077 23 6 -1.9772 5.2322 8.1297 24 7 -3.1691 5.2181 8.7000 25 6 -4.0079 4.2214 8.4950 26 7 -3.7003 3.1934 7.7284 27 6 -2.5275 3.1231 7.1235 28 6 1.3114 3.2928 3.6944 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6751 3.5161 -4.4440 37 1 2.6230 0.4187 2.5298 38 1 0.9446 1.0113 2.5302 39 1 2.6667 1.2871 5.5137 40 1 1.0500 0.9074 4.7732 41 1 2.1096 3.6646 5.7286 42 1 -0.5741 2.3615 5.7264 43 1 -1.2975 6.0543 8.2988 44 1 -4.9757 4.2456 8.9734 45 1 -2.2827 2.2777 6.4975 46 1 0.3481 3.0491 3.2462 47 1 1.6897 4.2681 3.3881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001404753292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:49 Heat of formation + Delta-G solvation = -0.802189 kcal Electronic energy + Delta-G solvation = -29697.270054 eV Core-core repulsion = 25494.848145 eV Total energy + Delta-G solvation = -4202.421909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.34094 -41.61542 -40.47587 -39.53317 -36.88920 -35.56207 -34.93605 -34.71788 -33.38592 -31.75423 -31.15454 -28.99249 -27.15101 -26.88617 -25.81848 -25.45934 -24.50318 -23.71400 -22.13328 -21.33285 -19.94070 -19.20087 -18.78579 -18.63623 -18.26018 -17.98394 -17.60790 -17.10133 -16.66151 -16.53467 -16.17560 -16.05041 -15.64641 -15.51448 -15.06566 -14.76207 -14.70472 -14.63863 -14.42468 -14.16252 -13.77230 -13.70164 -13.56479 -13.28731 -13.14602 -12.97330 -12.81933 -12.67725 -12.49281 -12.45133 -12.17717 -12.03776 -11.95720 -11.75253 -11.69413 -11.21981 -10.92001 -10.65162 -10.51828 -10.43298 -10.23722 -9.79569 -9.39765 -8.23276 -6.37900 -0.69794 -0.09661 1.34519 1.38193 1.48323 1.64413 1.80132 1.88723 2.28474 2.42034 2.69469 2.92653 3.01333 3.06022 3.07526 3.31661 3.43589 3.52798 3.68508 3.78449 3.83721 4.06761 4.13479 4.26004 4.30375 4.35844 4.44194 4.46353 4.60383 4.65466 4.68738 4.82050 4.92919 4.95488 5.00875 5.06492 5.15914 5.21237 5.29133 5.32998 5.40806 5.58047 5.71770 5.83937 5.94144 6.06730 6.32223 6.70825 6.85018 6.87159 7.00309 7.28786 7.55503 8.83459 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.001951 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.863760 B =14349.403226 C =14769.799280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.492 3.508 14 O -0.586 6.586 15 C 0.021 3.979 16 N -0.489 5.489 17 C 0.014 3.986 18 C 0.128 3.872 19 N -0.694 5.694 20 C 0.572 3.428 21 O -0.568 6.568 22 C -0.249 4.249 23 C 0.200 3.800 24 N -0.540 5.540 25 C 0.315 3.685 26 N -0.533 5.533 27 C 0.196 3.804 28 C 0.000 4.000 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.021 0.979 35 H -0.008 1.008 36 H 0.266 0.734 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.419 0.581 43 H 0.179 0.821 44 H 0.232 0.768 45 H 0.207 0.793 46 H 0.082 0.918 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.659 -10.060 24.588 30.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.199 1.199 13 C 0.280 3.720 14 O -0.466 6.466 15 C -0.110 4.110 16 N -0.213 5.213 17 C -0.114 4.114 18 C 0.022 3.978 19 N -0.347 5.347 20 C 0.359 3.641 21 O -0.447 6.447 22 C -0.257 4.257 23 C 0.034 3.966 24 N -0.253 5.253 25 C 0.029 3.971 26 N -0.246 5.246 27 C 0.029 3.971 28 C -0.130 4.130 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.038 0.962 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.258 0.742 43 H 0.196 0.804 44 H 0.248 0.752 45 H 0.224 0.776 46 H 0.100 0.900 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.123 -8.593 24.864 30.344 hybrid contribution 0.793 0.157 -1.559 1.756 sum -14.330 -8.435 23.305 28.629 Atomic orbital electron populations 1.22149 0.94456 1.03549 1.01608 1.21769 0.95360 0.81240 1.04011 1.48301 1.64197 1.15197 1.06097 1.18630 0.95120 0.91325 0.80654 1.21721 0.97990 1.31845 1.06335 0.92926 1.25882 1.02415 0.94545 0.96564 1.70057 1.37775 1.34279 1.14801 0.85417 0.79018 0.78214 0.78177 1.18594 1.20790 1.19868 1.21287 0.77456 0.86717 0.86500 1.90661 1.47214 1.20821 1.87901 1.22632 1.03451 0.96844 0.88115 1.68388 1.43656 1.07394 1.01812 1.24521 1.01545 0.94924 0.90420 1.22833 0.85087 0.98916 0.90914 1.45694 1.17826 1.23361 1.47799 1.18047 0.85775 0.82070 0.78229 1.90828 1.52687 1.37809 1.63406 1.21655 0.97432 1.00935 1.05665 1.23652 0.91868 0.95347 0.85742 1.68660 1.04120 1.28550 1.23984 1.25970 0.99401 0.82989 0.88702 1.68615 1.19381 1.26600 1.10041 1.24012 0.86562 0.95620 0.90950 1.24316 0.95113 0.97368 0.96206 0.94741 0.88462 0.91823 0.91327 0.87761 0.96150 0.99017 0.92479 0.85666 0.87868 0.86726 0.86649 0.87478 0.74218 0.80379 0.75184 0.77626 0.90038 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.10 2.72 5.93 86.38 0.51 3.23 16 3 N -0.61 -24.80 2.46 -826.17 -2.03 -26.83 16 4 C 0.26 14.33 5.16 85.63 0.44 14.78 16 5 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.00 0.27 5.46 84.66 0.46 0.74 16 8 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 9 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.49 19.76 7.48 87.65 0.66 20.41 16 14 O -0.59 -30.69 15.13 -3.04 -0.05 -30.74 16 15 C 0.02 0.50 3.86 85.55 0.33 0.83 16 16 N -0.49 -12.22 5.95 -912.94 -5.43 -17.65 16 17 C 0.01 0.18 7.73 86.41 0.67 0.85 16 18 C 0.13 2.29 4.43 46.56 0.21 2.50 16 19 N -0.69 -8.43 5.32 -449.05 -2.39 -10.82 16 20 C 0.57 10.19 7.79 86.78 0.68 10.86 16 21 O -0.57 -15.42 16.04 -3.89 -0.06 -15.49 16 22 C -0.25 -3.43 5.91 -19.91 -0.12 -3.55 16 23 C 0.20 3.17 10.88 85.06 0.93 4.10 16 24 N -0.54 -8.20 10.42 -198.98 -2.07 -10.28 16 25 C 0.32 3.51 12.27 180.84 2.22 5.72 16 26 N -0.53 -6.14 10.42 -198.97 -2.07 -8.21 16 27 C 0.20 1.77 10.81 85.06 0.92 2.69 16 28 C 0.00 0.00 6.56 86.40 0.57 0.57 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.15 7.22 -2.39 -0.02 1.14 16 32 H 0.07 2.10 8.07 -2.38 -0.02 2.08 16 33 H 0.10 2.03 6.44 -2.39 -0.02 2.02 16 34 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 35 H -0.01 -0.53 7.42 -2.39 -0.02 -0.54 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.13 2.48 7.40 -2.39 -0.02 2.46 16 38 H 0.10 1.66 6.73 -2.38 -0.02 1.64 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.12 0.57 7.77 -2.39 -0.02 0.55 16 41 H 0.11 2.47 7.46 -2.38 -0.02 2.46 16 42 H 0.42 1.57 6.87 -92.71 -0.64 0.94 16 43 H 0.18 2.79 7.74 -2.91 -0.02 2.77 16 44 H 0.23 0.89 8.06 -2.91 -0.02 0.86 16 45 H 0.21 0.13 6.54 -2.91 -0.02 0.11 16 46 H 0.08 1.81 7.78 -2.38 -0.02 1.80 16 47 H 0.06 1.95 8.09 -2.38 -0.02 1.93 16 Total: -1.00 -90.19 395.99 -1.98 -92.17 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.37 Total: 7.15 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 9.44 Total: 29.79 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -13.71 Total: -130.57 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.11 Total: -46.22 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -90.19 -1.98 -92.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001404753292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.370 kcal (2) G-P(sol) polarization free energy of solvation -90.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds