Wall clock time and date at job start Wed Apr 1 2020 04:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46995 * 2 1 4 4 C 1.46492 * 119.99734 * 269.99773 * 3 2 1 5 5 C 1.50700 * 109.47346 * 270.00119 * 4 3 2 6 6 H 1.07997 * 119.99640 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00072 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00078 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00160 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46840 * 60.00213 * 9 7 5 11 11 H 1.48503 * 109.47069 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47019 * 300.00133 * 9 7 5 13 13 C 1.34774 * 119.99815 * 90.00163 * 3 2 1 14 14 O 1.21277 * 119.99898 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00213 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47277 * 179.97438 * 15 13 3 17 17 C 1.46905 * 111.00308 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.47110 * 179.97438 * 17 16 15 19 19 H 1.08999 * 109.47237 * 65.00471 * 18 17 16 20 20 C 1.53000 * 109.46775 * 184.99937 * 18 17 16 21 21 N 1.46493 * 109.47222 * 304.99757 * 18 17 16 22 22 C 1.34784 * 119.99864 * 155.00033 * 21 18 17 23 23 O 1.21283 * 119.99649 * 359.72839 * 22 21 18 24 24 C 1.50694 * 119.99988 * 179.72721 * 22 21 18 25 25 H 1.08997 * 115.55144 * 325.66833 * 24 22 21 26 26 C 1.52998 * 117.50051 * 111.37919 * 24 22 21 27 27 C 1.52999 * 60.00102 * 107.48909 * 26 24 22 28 28 F 1.39904 * 117.49754 * 252.51188 * 27 26 24 29 29 F 1.39897 * 117.51898 * 107.48508 * 27 26 24 30 30 H 1.08999 * 109.47483 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47235 * 299.99604 * 1 2 3 32 32 H 1.09000 * 109.47340 * 60.00198 * 1 2 3 33 33 H 1.08993 * 109.47063 * 239.99894 * 2 1 3 34 34 H 1.09000 * 109.46690 * 120.00184 * 2 1 3 35 35 H 1.09000 * 109.47456 * 30.00484 * 4 3 2 36 36 H 1.09010 * 109.46833 * 150.00085 * 4 3 2 37 37 H 0.97002 * 120.00204 * 179.97438 * 8 7 5 38 38 H 1.09007 * 109.47405 * 59.99883 * 15 13 3 39 39 H 1.09002 * 109.47589 * 299.99883 * 15 13 3 40 40 H 1.00899 * 110.99684 * 303.95619 * 16 15 13 41 41 H 1.08996 * 109.46731 * 59.99760 * 17 16 15 42 42 H 1.08996 * 109.47074 * 300.00506 * 17 16 15 43 43 H 1.09003 * 109.47308 * 299.99973 * 20 18 17 44 44 H 1.09005 * 109.47224 * 60.00408 * 20 18 17 45 45 H 1.09008 * 109.47230 * 180.02562 * 20 18 17 46 46 H 0.97000 * 120.00740 * 334.72725 * 21 18 17 47 47 H 1.09000 * 117.50195 * 214.97657 * 26 24 22 48 48 H 1.09008 * 117.49913 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1493 2.3904 -2.8774 8 7 3.3496 3.1273 -3.6171 9 14 5.9138 2.0975 -3.4164 10 1 6.1416 0.6409 -3.5943 11 1 6.1615 2.7984 -4.7019 12 1 6.8409 2.6208 -2.3811 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3102 2.2061 3.5889 17 6 2.0769 1.5458 4.8803 18 6 2.4199 2.5116 6.0162 19 1 1.7310 3.3561 5.9956 20 6 2.2967 1.7857 7.3574 21 7 3.7919 2.9963 5.8475 22 6 4.1578 4.1813 6.3755 23 8 3.3496 4.8484 6.9860 24 6 5.5708 4.6771 6.2072 25 1 6.3422 3.9070 6.2058 26 6 5.7892 5.8980 5.3114 27 6 5.9239 6.0294 6.8298 28 9 4.9101 6.7110 7.5116 29 9 7.2120 6.1829 7.3536 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.5817 1.6877 -2.0283 36 1 2.0955 3.1411 -1.1384 37 1 3.6758 3.5184 -4.4427 38 1 2.6211 0.4186 2.5302 39 1 0.9432 1.0126 2.5299 40 1 3.2587 2.5435 3.5217 41 1 2.7073 0.6597 4.9543 42 1 1.0294 1.2537 4.9550 43 1 1.2758 1.4250 7.4829 44 1 2.9856 0.9412 7.3781 45 1 2.5406 2.4739 8.1668 46 1 4.4383 2.4628 5.3592 47 1 6.7044 5.9313 4.7202 48 1 4.9108 6.3424 4.8433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001406356541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:38 Heat of formation + Delta-G solvation = -161.145322 kcal Electronic energy + Delta-G solvation = -30881.839280 eV Core-core repulsion = 26221.775184 eV Total energy + Delta-G solvation = -4660.064095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -49.73706 -48.41168 -41.12968 -40.64564 -38.16793 -36.91203 -36.58066 -35.32126 -34.79416 -32.17789 -31.56504 -29.77663 -28.02956 -26.13670 -25.34738 -24.45220 -23.63027 -23.57952 -22.08944 -21.49946 -19.95948 -19.39843 -18.60421 -18.25533 -17.80055 -17.69363 -17.27320 -17.08632 -16.85894 -16.62884 -16.31486 -16.01278 -15.52149 -15.19724 -15.08367 -15.06116 -14.71874 -14.65717 -14.62937 -14.44959 -14.27138 -14.03100 -13.63202 -13.53494 -13.39236 -13.25199 -13.18566 -13.05351 -12.86145 -12.70369 -12.60974 -12.44705 -12.31538 -12.11754 -11.96036 -11.83892 -11.70843 -11.28125 -10.93400 -10.62247 -10.54140 -10.17497 -9.39835 -9.33591 -8.19803 -6.35305 1.18042 1.38490 1.42475 1.50003 1.73279 1.91249 2.02558 2.27120 2.31357 2.44479 3.09474 3.15839 3.19003 3.33944 3.48849 3.76197 3.78731 3.89346 4.13654 4.20670 4.30357 4.40009 4.42893 4.45788 4.52028 4.56585 4.67636 4.69842 4.71787 4.76091 4.78103 4.96414 5.02521 5.06829 5.08386 5.24561 5.28315 5.42371 5.46558 5.60421 5.85805 5.97179 6.09004 6.32018 6.40570 6.73382 6.87830 7.12018 7.31417 7.56635 8.86989 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.002665 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.926232 B =10503.159505 C =12826.358216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.492 3.508 14 O -0.587 6.587 15 C 0.059 3.941 16 N -0.694 5.694 17 C 0.059 3.941 18 C 0.144 3.856 19 H 0.066 0.934 20 C -0.153 4.153 21 N -0.703 5.703 22 C 0.539 3.461 23 O -0.566 6.566 24 C -0.184 4.184 25 H 0.186 0.814 26 C -0.131 4.131 27 C 0.202 3.798 28 F -0.164 7.164 29 F -0.159 7.159 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.017 0.983 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.344 0.656 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.413 0.587 47 H 0.165 0.835 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -9.484 20.760 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.200 1.200 13 C 0.280 3.720 14 O -0.468 6.468 15 C -0.073 4.073 16 N -0.328 5.328 17 C -0.069 4.069 18 C 0.040 3.960 19 H 0.084 0.916 20 C -0.212 4.212 21 N -0.355 5.355 22 C 0.324 3.676 23 O -0.445 6.445 24 C -0.206 4.206 25 H 0.203 0.797 26 C -0.169 4.169 27 C 0.164 3.836 28 F -0.145 7.145 29 F -0.139 7.139 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.035 0.965 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.250 0.750 47 H 0.182 0.818 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.854 -8.026 21.039 22.534 hybrid contribution 1.682 -0.088 -0.774 1.853 sum 2.535 -8.114 20.265 21.976 Atomic orbital electron populations 1.22165 0.94871 1.03431 1.01569 1.21744 0.95090 0.81333 1.04015 1.48285 1.64131 1.15107 1.06183 1.18648 0.95272 0.91352 0.80595 1.21685 0.97803 1.31903 1.06498 0.92493 1.25901 1.02461 0.94498 0.96495 1.70063 1.37936 1.34235 1.14855 0.85455 0.78969 0.78988 0.77322 1.18400 1.20760 1.19957 1.21353 0.77368 0.86676 0.86582 1.90645 1.47702 1.20493 1.87919 1.21828 1.04527 0.94119 0.86824 1.60022 1.32595 1.38879 1.01298 1.22346 1.03847 0.94772 0.85964 1.21057 0.82531 0.97065 0.95389 0.91571 1.22075 1.03905 1.00344 0.94876 1.45831 1.13670 1.20237 1.55775 1.19600 0.88190 0.81320 0.78452 1.90781 1.53807 1.57313 1.42589 1.23768 0.98235 0.94699 1.03884 0.79654 1.24429 1.07952 0.94986 0.89515 1.19839 0.73189 0.97658 0.92869 1.93068 1.58410 1.80981 1.82019 1.93035 1.36109 1.96201 1.88601 0.88603 0.92041 0.94742 0.91200 0.87694 0.96471 0.98976 0.92509 0.89589 0.86165 0.83672 0.91655 0.87817 0.89759 0.90448 0.93948 0.74969 0.81775 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 10.24 71.98 0.74 -2.93 16 2 C 0.10 2.75 5.93 86.38 0.51 3.27 16 3 N -0.61 -24.18 2.46 -826.17 -2.03 -26.21 16 4 C 0.26 13.97 5.16 85.63 0.44 14.41 16 5 C -0.54 -30.30 9.39 25.60 0.24 -30.06 16 6 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.29 5.46 84.65 0.46 0.76 16 8 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 9 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 C 0.49 18.99 7.71 87.66 0.68 19.66 16 14 O -0.59 -29.32 15.78 -3.02 -0.05 -29.36 16 15 C 0.06 1.37 4.72 85.56 0.40 1.77 16 16 N -0.69 -15.93 6.12 -517.93 -3.17 -19.10 16 17 C 0.06 0.82 5.30 86.30 0.46 1.28 16 18 C 0.14 2.42 2.88 44.99 0.13 2.55 16 19 H 0.07 1.60 7.57 -2.39 -0.02 1.58 16 20 C -0.15 -1.98 9.48 71.98 0.68 -1.30 16 21 N -0.70 -11.50 4.35 -442.55 -1.92 -13.42 16 22 C 0.54 11.91 7.58 87.65 0.66 12.58 16 23 O -0.57 -17.87 14.80 -3.04 -0.04 -17.91 16 24 C -0.18 -2.99 6.17 -11.54 -0.07 -3.06 16 25 H 0.19 1.50 8.14 -2.39 -0.02 1.48 16 26 C -0.13 -2.12 10.20 30.59 0.31 -1.81 16 27 C 0.20 4.26 5.19 30.59 0.16 4.42 16 28 F -0.16 -4.75 15.71 44.97 0.71 -4.05 16 29 F -0.16 -3.29 17.60 44.97 0.79 -2.50 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.27 7.22 -2.39 -0.02 1.26 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 34 H 0.10 2.00 6.44 -2.39 -0.02 1.98 16 35 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 36 H -0.01 -0.49 7.42 -2.38 -0.02 -0.51 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.09 1.48 7.40 -2.38 -0.02 1.47 16 39 H 0.12 2.26 7.19 -2.39 -0.02 2.25 16 40 H 0.34 8.52 7.29 -89.69 -0.65 7.86 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.41 4.44 8.17 -92.71 -0.76 3.68 16 47 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -84.80 408.76 1.98 -82.81 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.42 Total: 18.39 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 5.81 Total: 21.53 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -6.84 Total: -114.51 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.09 Total: -47.28 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.50 Total: -6.55 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -84.80 1.98 -82.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001406356541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.333 kcal (2) G-P(sol) polarization free energy of solvation -84.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds