Wall clock time and date at job start Wed Apr 1 2020 04:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46796 * 2 1 4 4 C 1.46493 * 120.00478 * 270.00155 * 3 2 1 5 5 C 1.50710 * 109.47055 * 270.00353 * 4 3 2 6 6 H 1.07995 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99733 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99598 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46581 * 90.00202 * 9 7 5 11 11 H 1.48499 * 109.46911 * 210.00150 * 9 7 5 12 12 H 1.48497 * 109.47345 * 330.00137 * 9 7 5 13 13 C 1.34779 * 119.99788 * 90.00307 * 3 2 1 14 14 O 1.21279 * 120.00322 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99703 * 0.02562 * 13 3 2 16 16 N 1.46907 * 109.46745 * 180.02562 * 15 13 3 17 17 C 1.46896 * 110.99775 * 179.97438 * 16 15 13 18 18 H 1.09009 * 112.85100 * 23.80351 * 17 16 15 19 19 C 1.53785 * 113.61645 * 154.99564 * 17 16 15 20 20 C 1.53778 * 87.08103 * 140.06553 * 19 17 16 21 21 H 1.08997 * 113.61574 * 89.20019 * 20 19 17 22 22 C 1.53004 * 113.61510 * 220.02113 * 20 19 17 23 23 N 1.46499 * 109.47198 * 183.47206 * 22 20 19 24 24 C 1.34777 * 119.99665 * 180.27868 * 23 22 20 25 25 O 1.21283 * 119.99990 * 359.71991 * 24 23 22 26 26 C 1.50698 * 119.99538 * 179.72653 * 24 23 22 27 27 F 1.39906 * 109.46923 * 184.99981 * 26 24 23 28 28 F 1.39899 * 109.47202 * 304.99316 * 26 24 23 29 29 C 1.53780 * 87.17316 * 334.61382 * 20 19 17 30 30 H 1.09004 * 109.47195 * 299.99566 * 1 2 3 31 31 H 1.08993 * 109.47463 * 60.00020 * 1 2 3 32 32 H 1.09008 * 109.47385 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47195 * 240.00434 * 2 1 3 34 34 H 1.08994 * 109.47150 * 120.00419 * 2 1 3 35 35 H 1.09003 * 109.47312 * 30.00008 * 4 3 2 36 36 H 1.08997 * 109.47256 * 150.00320 * 4 3 2 37 37 H 0.96996 * 119.99621 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47597 * 59.99926 * 15 13 3 39 39 H 1.08999 * 109.47159 * 299.99184 * 15 13 3 40 40 H 1.00904 * 110.99768 * 303.94736 * 16 15 13 41 41 H 1.09003 * 113.60674 * 25.51489 * 19 17 16 42 42 H 1.09003 * 113.61681 * 254.61898 * 19 17 16 43 43 H 1.09009 * 109.46730 * 63.46993 * 22 20 19 44 44 H 1.08998 * 109.46846 * 303.47537 * 22 20 19 45 45 H 0.97001 * 119.99790 * 359.97438 * 23 22 20 46 46 H 1.08996 * 109.47392 * 64.99614 * 26 24 23 47 47 H 1.09004 * 113.61666 * 139.94562 * 29 20 19 48 48 H 1.09001 * 113.61358 * 270.84173 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3899 -2.8779 8 7 3.3489 3.1260 -3.6179 9 14 5.9134 2.0970 -3.4168 10 1 5.9773 0.8757 -4.2592 11 1 6.3919 3.2643 -4.2002 12 1 6.7735 1.9181 -2.2196 13 6 2.2429 2.0165 1.1672 14 8 2.6475 3.1598 1.1674 15 6 1.9923 1.3058 2.4723 16 7 2.3099 2.2060 3.5890 17 6 2.0764 1.5457 4.8802 18 1 2.1227 0.4586 4.8142 19 6 2.9137 2.1291 6.0307 20 6 1.6659 1.9691 6.9152 21 1 1.6005 0.9984 7.4066 22 6 1.4422 3.1381 7.8767 23 7 0.2841 2.8553 8.7282 24 6 -0.1067 3.7533 9.6541 25 8 0.5034 4.7931 9.7859 26 6 -1.3017 3.4651 10.5258 27 9 -1.5786 4.5819 11.3217 28 9 -2.4093 3.1810 9.7197 29 6 0.8333 2.0640 5.6258 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0283 36 1 2.0954 3.1411 -1.1382 37 1 3.6747 3.5159 -4.4441 38 1 2.6229 0.4186 2.5298 39 1 0.9445 1.0113 2.5303 40 1 3.2579 2.5448 3.5219 41 1 3.2077 3.1669 5.8740 42 1 3.7463 1.4929 6.3311 43 1 1.2597 4.0485 7.3055 44 1 2.3271 3.2710 8.4991 45 1 -0.2040 2.0238 8.6225 46 1 -1.0876 2.6080 11.1642 47 1 -0.0114 1.3755 5.5997 48 1 0.5575 3.0841 5.3582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417759318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:59 Heat of formation + Delta-G solvation = -150.263475 kcal Electronic energy + Delta-G solvation = -29880.534421 eV Core-core repulsion = 25220.942198 eV Total energy + Delta-G solvation = -4659.592223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -49.66837 -47.69538 -40.38405 -39.49226 -38.81179 -35.58515 -35.20923 -33.77425 -32.74086 -30.11718 -29.86528 -28.08514 -26.95286 -26.06703 -25.33747 -23.03324 -22.50488 -21.75957 -21.60236 -19.96044 -18.85904 -18.33057 -18.31099 -18.00302 -16.69325 -16.48467 -16.31696 -16.07867 -15.75059 -15.63462 -15.31380 -15.11532 -14.54195 -14.42690 -14.38272 -14.04934 -13.96438 -13.67922 -13.59427 -13.33110 -13.19592 -12.78019 -12.68074 -12.64090 -12.37588 -12.02436 -11.94055 -11.80862 -11.49097 -11.20766 -11.17847 -11.03549 -10.90862 -10.74830 -10.60959 -10.51735 -10.42197 -10.13536 -9.72640 -9.63672 -8.90294 -8.44057 -8.36606 -7.64929 -6.04592 -4.09438 1.61958 2.06732 3.26340 3.28614 3.35437 3.38424 3.45943 3.53900 3.72911 3.98987 4.12646 4.16850 4.19918 4.34120 4.43664 4.51368 4.62829 4.78416 5.01454 5.10314 5.22548 5.26185 5.29899 5.39545 5.41526 5.49732 5.51739 5.57014 5.64037 5.65013 5.75056 5.79701 5.93704 6.00604 6.10505 6.21824 6.46999 6.64761 6.91395 7.13996 7.32253 7.38064 7.46748 7.56303 7.92095 8.23608 8.44425 8.90415 9.12501 9.55664 11.03398 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.001637 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.060881 B =17097.388609 C =17594.598848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.529 6.529 15 C 0.041 3.959 16 N -0.660 5.660 17 C 0.060 3.940 18 H 0.073 0.927 19 C -0.131 4.131 20 C -0.126 4.126 21 H 0.097 0.903 22 C 0.129 3.871 23 N -0.709 5.709 24 C 0.469 3.531 25 O -0.501 6.501 26 C 0.258 3.742 27 F -0.176 7.176 28 F -0.187 7.187 29 C -0.122 4.122 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.354 0.646 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.407 0.593 46 H 0.137 0.863 47 H 0.065 0.935 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 -9.892 27.024 30.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.405 6.405 15 C -0.091 4.091 16 N -0.293 5.293 17 C -0.050 4.050 18 H 0.091 0.909 19 C -0.169 4.169 20 C -0.145 4.145 21 H 0.115 0.885 22 C 0.006 3.994 23 N -0.362 5.362 24 C 0.250 3.750 25 O -0.374 6.374 26 C 0.201 3.799 27 F -0.157 7.157 28 F -0.169 7.169 29 C -0.160 4.160 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.174 0.826 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.242 0.758 46 H 0.154 0.846 47 H 0.084 0.916 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.742 -8.055 26.885 29.396 hybrid contribution 1.277 -1.285 -0.501 1.879 sum -7.465 -9.340 26.384 28.966 Atomic orbital electron populations 1.22226 0.96814 1.01316 1.02409 1.21395 0.93508 0.84335 1.02489 1.48254 1.64040 1.13166 1.07740 1.19252 0.96157 0.93690 0.78133 1.21428 0.96962 1.31882 1.06214 0.92589 1.24942 0.97826 0.94942 0.96451 1.69931 1.35683 1.33381 1.14285 0.86503 0.84716 0.77662 0.78550 1.20684 1.21076 1.19972 1.20200 0.78909 0.87096 0.84909 1.90677 1.45135 1.17749 1.86938 1.21964 1.02190 0.94325 0.90667 1.60254 1.32532 1.36905 0.99625 1.23002 0.97131 0.96645 0.88241 0.90936 1.23200 0.95968 1.02846 0.94935 1.22660 0.99010 0.98194 0.94657 0.88530 1.21554 0.87338 0.98599 0.91918 1.45921 1.32524 1.21793 1.35964 1.21075 0.86538 0.85095 0.82294 1.90850 1.54842 1.24363 1.67364 1.21651 0.82605 0.88646 0.87020 1.93076 1.93890 1.55181 1.73541 1.93074 1.55394 1.93714 1.74693 1.23248 0.96514 1.03018 0.93257 0.93035 0.92002 0.92264 0.90013 0.91994 0.95086 0.93884 0.92721 0.93016 0.88872 0.82562 0.88610 0.91002 0.90291 0.90742 0.75811 0.84584 0.91602 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.38 2.46 -175.06 -0.43 -12.81 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 5 C -0.53 -14.83 9.39 -34.43 -0.32 -15.15 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.50 10.21 7.71 -10.98 -0.08 10.13 16 14 O -0.53 -13.22 15.78 5.56 0.09 -13.13 16 15 C 0.04 0.58 4.56 -4.97 -0.02 0.56 16 16 N -0.66 -8.71 6.19 -107.03 -0.66 -9.37 16 17 C 0.06 0.54 4.14 -66.81 -0.28 0.26 16 18 H 0.07 0.58 7.87 -51.92 -0.41 0.17 16 19 C -0.13 -0.94 7.22 -25.92 -0.19 -1.13 16 20 C -0.13 -0.70 3.75 -89.81 -0.34 -1.04 16 21 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 22 C 0.13 0.85 5.50 -4.04 -0.02 0.83 16 23 N -0.71 -3.88 5.56 -60.29 -0.33 -4.21 16 24 C 0.47 3.70 7.63 -10.99 -0.08 3.62 16 25 O -0.50 -6.31 16.62 5.55 0.09 -6.22 16 26 C 0.26 1.40 5.72 36.00 0.21 1.61 16 27 F -0.18 -1.54 16.95 2.25 0.04 -1.50 16 28 F -0.19 -1.22 17.32 2.25 0.04 -1.18 16 29 C -0.12 -0.94 7.45 -25.83 -0.19 -1.14 16 30 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.05 0.64 7.39 -51.93 -0.38 0.26 16 39 H 0.09 1.16 7.19 -51.93 -0.37 0.79 16 40 H 0.35 5.02 8.25 -39.29 -0.32 4.69 16 41 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.68 7.88 -51.92 -0.41 0.27 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.41 1.06 8.47 -40.82 -0.35 0.72 16 46 H 0.14 0.09 8.14 -51.93 -0.42 -0.33 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.93 7.92 -51.93 -0.41 0.52 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -36.66 408.27 -7.91 -44.56 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.51 Total: 0.40 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -1.09 Total: 6.38 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.69 Total: -52.23 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.18 Total: -19.35 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.66 -7.91 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417759318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.701 kcal (2) G-P(sol) polarization free energy of solvation -36.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds