Wall clock time and date at job start Wed Apr 1 2020 04:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46796 * 2 1 4 4 C 1.46493 * 120.00478 * 270.00155 * 3 2 1 5 5 C 1.50710 * 109.47055 * 270.00353 * 4 3 2 6 6 H 1.07995 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99733 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99598 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46581 * 90.00202 * 9 7 5 11 11 H 1.48499 * 109.46911 * 210.00150 * 9 7 5 12 12 H 1.48497 * 109.47345 * 330.00137 * 9 7 5 13 13 C 1.34779 * 119.99788 * 90.00307 * 3 2 1 14 14 O 1.21279 * 120.00322 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99703 * 0.02562 * 13 3 2 16 16 N 1.46907 * 109.46745 * 180.02562 * 15 13 3 17 17 C 1.46896 * 110.99775 * 179.97438 * 16 15 13 18 18 H 1.09009 * 112.85100 * 23.80351 * 17 16 15 19 19 C 1.53785 * 113.61645 * 154.99564 * 17 16 15 20 20 C 1.53778 * 87.08103 * 140.06553 * 19 17 16 21 21 H 1.08997 * 113.61574 * 89.20019 * 20 19 17 22 22 C 1.53004 * 113.61510 * 220.02113 * 20 19 17 23 23 N 1.46499 * 109.47198 * 183.47206 * 22 20 19 24 24 C 1.34777 * 119.99665 * 180.27868 * 23 22 20 25 25 O 1.21283 * 119.99990 * 359.71991 * 24 23 22 26 26 C 1.50698 * 119.99538 * 179.72653 * 24 23 22 27 27 F 1.39906 * 109.46923 * 184.99981 * 26 24 23 28 28 F 1.39899 * 109.47202 * 304.99316 * 26 24 23 29 29 C 1.53780 * 87.17316 * 334.61382 * 20 19 17 30 30 H 1.09004 * 109.47195 * 299.99566 * 1 2 3 31 31 H 1.08993 * 109.47463 * 60.00020 * 1 2 3 32 32 H 1.09008 * 109.47385 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47195 * 240.00434 * 2 1 3 34 34 H 1.08994 * 109.47150 * 120.00419 * 2 1 3 35 35 H 1.09003 * 109.47312 * 30.00008 * 4 3 2 36 36 H 1.08997 * 109.47256 * 150.00320 * 4 3 2 37 37 H 0.96996 * 119.99621 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47597 * 59.99926 * 15 13 3 39 39 H 1.08999 * 109.47159 * 299.99184 * 15 13 3 40 40 H 1.00904 * 110.99768 * 303.94736 * 16 15 13 41 41 H 1.09003 * 113.60674 * 25.51489 * 19 17 16 42 42 H 1.09003 * 113.61681 * 254.61898 * 19 17 16 43 43 H 1.09009 * 109.46730 * 63.46993 * 22 20 19 44 44 H 1.08998 * 109.46846 * 303.47537 * 22 20 19 45 45 H 0.97001 * 119.99790 * 359.97438 * 23 22 20 46 46 H 1.08996 * 109.47392 * 64.99614 * 26 24 23 47 47 H 1.09004 * 113.61666 * 139.94562 * 29 20 19 48 48 H 1.09001 * 113.61358 * 270.84173 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3899 -2.8779 8 7 3.3489 3.1260 -3.6179 9 14 5.9134 2.0970 -3.4168 10 1 5.9773 0.8757 -4.2592 11 1 6.3919 3.2643 -4.2002 12 1 6.7735 1.9181 -2.2196 13 6 2.2429 2.0165 1.1672 14 8 2.6475 3.1598 1.1674 15 6 1.9923 1.3058 2.4723 16 7 2.3099 2.2060 3.5890 17 6 2.0764 1.5457 4.8802 18 1 2.1227 0.4586 4.8142 19 6 2.9137 2.1291 6.0307 20 6 1.6659 1.9691 6.9152 21 1 1.6005 0.9984 7.4066 22 6 1.4422 3.1381 7.8767 23 7 0.2841 2.8553 8.7282 24 6 -0.1067 3.7533 9.6541 25 8 0.5034 4.7931 9.7859 26 6 -1.3017 3.4651 10.5258 27 9 -1.5786 4.5819 11.3217 28 9 -2.4093 3.1810 9.7197 29 6 0.8333 2.0640 5.6258 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0283 36 1 2.0954 3.1411 -1.1382 37 1 3.6747 3.5159 -4.4441 38 1 2.6229 0.4186 2.5298 39 1 0.9445 1.0113 2.5303 40 1 3.2579 2.5448 3.5219 41 1 3.2077 3.1669 5.8740 42 1 3.7463 1.4929 6.3311 43 1 1.2597 4.0485 7.3055 44 1 2.3271 3.2710 8.4991 45 1 -0.2040 2.0238 8.6225 46 1 -1.0876 2.6080 11.1642 47 1 -0.0114 1.3755 5.5997 48 1 0.5575 3.0841 5.3582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417759318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:55 Heat of formation + Delta-G solvation = -178.478044 kcal Electronic energy + Delta-G solvation = -29881.757896 eV Core-core repulsion = 25220.942198 eV Total energy + Delta-G solvation = -4660.815699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.16678 -48.21432 -41.05897 -40.68569 -39.82976 -36.97090 -36.19765 -35.01826 -34.52899 -31.60918 -30.53687 -29.52563 -27.94538 -26.86730 -26.38727 -24.67305 -23.88135 -22.56287 -22.18231 -20.64351 -19.81993 -19.35349 -18.76479 -18.62398 -18.54361 -17.88409 -17.30363 -17.09335 -16.78898 -16.61607 -16.31436 -16.15839 -15.75170 -15.37903 -15.09134 -15.00801 -14.74764 -14.63786 -14.54904 -14.45174 -14.25204 -14.17056 -13.65903 -13.48551 -13.30026 -13.24484 -13.17832 -13.07674 -12.88998 -12.66376 -12.52320 -12.40494 -12.15281 -11.87263 -11.83557 -11.72185 -11.65815 -11.17108 -11.05055 -10.64826 -10.51396 -10.31098 -9.41704 -9.31177 -8.22474 -6.37754 1.02189 1.35283 1.38742 1.48777 1.56681 1.88857 2.27390 2.42991 2.91767 3.06621 3.09468 3.26673 3.55650 3.60343 3.73280 3.74996 3.79433 3.92668 3.96994 4.11940 4.27070 4.35394 4.41559 4.44408 4.50226 4.67244 4.69994 4.80698 4.92837 4.94770 4.98063 5.00622 5.06260 5.08580 5.17383 5.22591 5.32357 5.40661 5.49883 5.58323 5.87117 6.06524 6.13577 6.16957 6.36918 6.70962 6.84141 6.85686 7.28790 7.54517 8.84439 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.001637 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.060881 B =17097.388609 C =17594.598848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.491 3.509 14 O -0.590 6.590 15 C 0.060 3.940 16 N -0.683 5.683 17 C 0.056 3.944 18 H 0.097 0.903 19 C -0.132 4.132 20 C -0.101 4.101 21 H 0.131 0.869 22 C 0.129 3.871 23 N -0.691 5.691 24 C 0.464 3.536 25 O -0.558 6.558 26 C 0.262 3.738 27 F -0.198 7.198 28 F -0.192 7.192 29 C -0.124 4.124 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.020 0.980 36 H -0.008 1.008 37 H 0.267 0.733 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.343 0.657 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.425 0.575 46 H 0.197 0.803 47 H 0.084 0.916 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -13.854 29.074 33.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.072 4.072 16 N -0.315 5.315 17 C -0.053 4.053 18 H 0.115 0.885 19 C -0.171 4.171 20 C -0.120 4.120 21 H 0.149 0.851 22 C 0.006 3.994 23 N -0.344 5.344 24 C 0.246 3.754 25 O -0.436 6.436 26 C 0.205 3.795 27 F -0.179 7.179 28 F -0.174 7.174 29 C -0.162 4.162 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.038 0.962 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.163 0.837 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.263 0.737 46 H 0.213 0.787 47 H 0.103 0.897 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.825 -12.120 28.947 32.599 hybrid contribution 1.238 -0.044 -1.161 1.698 sum -7.587 -12.165 27.786 31.266 Atomic orbital electron populations 1.22157 0.94697 1.03480 1.01575 1.21746 0.95224 0.81292 1.03936 1.48294 1.64126 1.15129 1.06169 1.18662 0.95259 0.91382 0.80631 1.21713 0.97859 1.31935 1.06463 0.92744 1.25906 1.02512 0.94494 0.96520 1.70063 1.37856 1.34231 1.14761 0.85386 0.78862 0.78157 0.78209 1.18716 1.20815 1.19670 1.21420 0.77279 0.86680 0.86678 1.90640 1.47764 1.20654 1.87966 1.21865 1.04098 0.94141 0.87056 1.60276 1.32036 1.38029 1.01179 1.23228 0.98087 0.97718 0.86308 0.88492 1.23180 0.97102 1.01977 0.94793 1.22572 0.97008 0.99033 0.93408 0.85077 1.21447 0.87715 0.98221 0.92007 1.45800 1.31925 1.22032 1.34603 1.21632 0.86906 0.84410 0.82422 1.90827 1.56968 1.26705 1.69125 1.22067 0.81028 0.89538 0.86836 1.93029 1.93951 1.56859 1.74037 1.93064 1.55578 1.93639 1.75087 1.23204 0.97049 1.01741 0.94221 0.92104 0.94647 0.88490 0.91137 0.87917 0.96235 0.98966 0.92465 0.90153 0.86399 0.83740 0.90633 0.89356 0.93056 0.90869 0.73684 0.78689 0.89747 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 10.24 71.98 0.74 -3.06 16 2 C 0.10 2.90 5.93 86.38 0.51 3.42 16 3 N -0.61 -25.35 2.46 -826.15 -2.03 -27.38 16 4 C 0.26 14.36 5.16 85.64 0.44 14.81 16 5 C -0.54 -31.40 9.39 25.60 0.24 -31.15 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.00 0.26 5.46 84.66 0.46 0.72 16 8 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 9 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 C 0.49 20.16 7.71 87.66 0.68 20.83 16 14 O -0.59 -31.06 15.78 -3.03 -0.05 -31.11 16 15 C 0.06 1.57 4.56 85.56 0.39 1.96 16 16 N -0.68 -17.35 6.19 -492.53 -3.05 -20.40 16 17 C 0.06 0.84 4.14 45.50 0.19 1.03 16 18 H 0.10 1.06 7.87 -2.38 -0.02 1.04 16 19 C -0.13 -1.65 7.22 31.12 0.22 -1.43 16 20 C -0.10 -0.84 3.75 -10.27 -0.04 -0.88 16 21 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 22 C 0.13 1.58 5.50 86.38 0.47 2.06 16 23 N -0.69 -6.18 5.56 -463.05 -2.57 -8.75 16 24 C 0.46 6.87 7.63 87.66 0.67 7.54 16 25 O -0.56 -14.48 16.62 -3.04 -0.05 -14.53 16 26 C 0.26 2.29 5.72 71.24 0.41 2.70 16 27 F -0.20 -3.32 16.95 44.97 0.76 -2.56 16 28 F -0.19 -2.09 17.32 44.97 0.78 -1.31 16 29 C -0.12 -1.63 7.45 31.18 0.23 -1.40 16 30 H 0.06 1.33 7.22 -2.38 -0.02 1.31 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 2.20 8.07 -2.38 -0.02 2.19 16 34 H 0.10 2.15 6.44 -2.39 -0.02 2.14 16 35 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 36 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.08 1.66 7.39 -2.39 -0.02 1.64 16 39 H 0.12 2.50 7.19 -2.39 -0.02 2.49 16 40 H 0.34 9.84 8.25 -89.69 -0.74 9.10 16 41 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 0.94 7.88 -2.38 -0.02 0.92 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.42 0.72 8.47 -92.71 -0.79 -0.07 16 46 H 0.20 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.06 1.28 7.92 -2.39 -0.02 1.26 16 Total: -1.00 -88.07 408.27 1.19 -86.88 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.53 Total: 11.60 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 5.62 Total: 17.15 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -7.37 Total: -113.26 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.10 Total: -45.64 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 1.54 Total: -3.87 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -88.07 1.19 -86.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417759318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.593 kcal (2) G-P(sol) polarization free energy of solvation -88.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds