Wall clock time and date at job start Wed Apr 1 2020 05:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40350 * 126.03978 * 2 1 4 4 C 1.31431 * 108.26634 * 179.90881 * 3 2 1 5 5 O 1.35996 * 126.04374 * 179.97438 * 4 3 2 6 6 C 1.39429 * 107.91261 * 359.97184 * 4 3 2 7 7 C 1.34130 * 126.04192 * 179.97438 * 2 1 3 8 8 C 1.50815 * 128.76116 * 0.20681 * 7 2 1 9 9 N 1.47290 * 108.26791 * 163.57507 * 8 7 2 10 10 C 1.46891 * 111.00012 * 175.67018 * 9 8 7 11 11 C 1.50702 * 109.47259 * 170.00079 * 10 9 8 12 12 O 1.21283 * 119.99478 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00430 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00036 * 179.72648 * 13 11 10 15 15 C 1.50703 * 109.47126 * 270.27831 * 14 13 11 16 16 H 1.08002 * 119.99820 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00045 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46767 * 89.99886 * 19 17 15 21 21 H 1.48493 * 109.47240 * 210.00027 * 19 17 15 22 22 H 1.48500 * 109.46974 * 329.99973 * 19 17 15 23 23 C 1.46506 * 119.99969 * 0.02562 * 13 11 10 24 24 C 1.53000 * 109.46992 * 269.72101 * 23 13 11 25 25 C 1.47196 * 109.47137 * 179.97438 * 24 23 13 26 26 N 9.43528 * 86.60647 * 167.46142 * 2 1 3 27 27 C 1.46946 * 111.47960 * 51.36646 * 9 8 7 28 28 C 1.50873 * 128.76631 * 180.27766 * 6 4 3 29 29 H 1.08990 * 109.47572 * 270.01158 * 1 2 3 30 30 H 1.09007 * 109.46593 * 30.01263 * 1 2 3 31 31 H 1.09005 * 109.46533 * 150.00443 * 1 2 3 32 32 H 0.96701 * 113.99820 * 90.01770 * 5 4 3 33 33 H 1.09008 * 109.70405 * 43.88322 * 8 7 2 34 34 H 1.09000 * 109.74063 * 283.29545 * 8 7 2 35 35 H 1.09009 * 109.47292 * 50.00575 * 10 9 8 36 36 H 1.09001 * 109.47406 * 290.00224 * 10 9 8 37 37 H 1.08994 * 109.47173 * 30.28203 * 14 13 11 38 38 H 1.09005 * 109.47077 * 150.28374 * 14 13 11 39 39 H 0.96995 * 119.99689 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46803 * 29.71536 * 23 13 11 41 41 H 1.09000 * 109.47214 * 149.72329 * 23 13 11 42 42 H 1.09000 * 109.47214 * 300.00285 * 24 23 13 43 43 H 1.09008 * 109.47142 * 59.99450 * 24 23 13 44 44 H 1.08997 * 109.44249 * 48.49297 * 27 9 8 45 45 H 1.09001 * 109.43980 * 168.38139 * 27 9 8 46 46 H 1.09007 * 109.78787 * 283.66745 * 28 6 4 47 47 H 1.08996 * 109.79100 * 44.44660 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2908 1.1349 0.0000 4 6 3.5424 0.7337 0.0020 5 8 4.6401 1.5366 0.0022 6 6 3.5458 -0.6606 0.0039 7 6 2.2543 -1.0846 0.0005 8 6 1.8589 -2.5400 -0.0031 9 7 3.0337 -3.3365 -0.3965 10 6 2.7440 -4.7746 -0.3206 11 6 3.8699 -5.5481 -0.9572 12 8 4.8202 -4.9593 -1.4274 13 7 3.8212 -6.8942 -1.0032 14 6 4.9128 -7.6458 -1.6274 15 6 4.6208 -7.8306 -3.0943 16 1 3.7127 -7.4288 -3.5190 17 6 5.5125 -8.5136 -3.8939 18 7 6.6181 -9.0033 -3.3767 19 14 5.1504 -8.7434 -5.7121 20 1 5.7185 -7.6049 -6.4776 21 1 5.7635 -10.0114 -6.1825 22 1 3.6811 -8.7966 -5.9212 23 6 2.6735 -7.6055 -0.4347 24 6 2.9499 -7.9271 1.0354 25 6 1.7966 -8.6412 1.6067 26 7 0.9066 -9.1941 2.0448 27 6 4.2118 -2.9932 0.4119 28 6 4.7244 -1.6024 0.0123 29 1 -0.3634 0.0002 1.0275 30 1 -0.3633 0.8900 -0.5141 31 1 -0.3632 -0.8901 -0.5138 32 1 4.9566 1.7697 0.8856 33 1 1.0508 -2.6996 -0.7171 34 1 1.5318 -2.8351 0.9939 35 1 1.8140 -4.9863 -0.8482 36 1 2.6448 -5.0707 0.7237 37 1 5.8465 -7.0960 -1.5092 38 1 5.0024 -8.6212 -1.1491 39 1 7.2452 -9.4841 -3.9392 40 1 1.7847 -6.9788 -0.5086 41 1 2.5114 -8.5323 -0.9851 42 1 3.8388 -8.5537 1.1093 43 1 3.1121 -7.0002 1.5858 44 1 3.9392 -2.9901 1.4673 45 1 4.9957 -3.7314 0.2425 46 1 5.1700 -1.6448 -0.9816 47 1 5.4655 -1.2598 0.7344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001422161005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:28 Heat of formation + Delta-G solvation = 55.665626 kcal Electronic energy + Delta-G solvation = -30573.695153 eV Core-core repulsion = 26373.721872 eV Total energy + Delta-G solvation = -4199.973281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77563 -39.60595 -37.69088 -37.28080 -36.78556 -35.21382 -33.42546 -32.91532 -31.86000 -30.89394 -30.28428 -28.40521 -26.56777 -26.49982 -24.14135 -23.98083 -22.93777 -22.03064 -21.24107 -19.07900 -18.68118 -17.94464 -17.62561 -16.81303 -16.71063 -16.47106 -15.99582 -15.62864 -15.41378 -14.87323 -14.75435 -14.58220 -14.49147 -14.32674 -13.92911 -13.74511 -13.64534 -13.59196 -12.97490 -12.90022 -12.75927 -12.51518 -12.47313 -12.29360 -12.02970 -11.94090 -11.84910 -11.74371 -11.30828 -11.24718 -11.01220 -10.98447 -10.84892 -10.62953 -10.22244 -10.17635 -9.70322 -9.31932 -9.03857 -8.47397 -8.36186 -8.31266 -7.85538 -6.09392 -4.13780 1.55337 2.03039 2.47152 2.66996 2.75133 3.23391 3.30251 3.36774 3.37491 3.40665 3.77331 3.85328 4.18627 4.28130 4.42126 4.51272 4.79406 4.84468 4.90624 4.92813 5.03346 5.04360 5.08909 5.15485 5.17829 5.21155 5.26408 5.34684 5.39515 5.47245 5.54694 5.71627 5.77090 5.97496 6.02970 6.10068 6.15528 6.35915 6.66999 6.82850 6.94430 7.00587 7.33761 7.41271 7.42092 7.48417 7.51393 7.86897 8.16240 8.23135 8.83527 8.97984 9.52054 10.98711 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.002955 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.456953 B = 9472.264651 C =11198.283797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.351 5.351 3 N -0.311 5.311 4 C 0.263 3.737 5 O -0.458 6.458 6 C -0.235 4.235 7 C 0.093 3.907 8 C 0.124 3.876 9 N -0.514 5.514 10 C 0.035 3.965 11 C 0.508 3.492 12 O -0.509 6.509 13 N -0.598 5.598 14 C 0.247 3.753 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.118 3.882 24 C -0.050 4.050 25 C 0.217 3.783 26 N -0.445 5.445 27 C 0.054 3.946 28 C -0.029 4.029 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.395 0.605 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.029 0.971 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 13.269 12.748 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.137 5.137 3 N -0.145 5.145 4 C 0.059 3.941 5 O -0.261 6.261 6 C -0.247 4.247 7 C -0.036 4.036 8 C -0.006 4.006 9 N -0.239 5.239 10 C -0.096 4.096 11 C 0.294 3.706 12 O -0.384 6.384 13 N -0.331 5.331 14 C 0.128 3.872 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.009 4.009 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.123 5.123 27 C -0.074 4.074 28 C -0.068 4.068 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.251 0.749 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.122 0.878 44 H 0.048 0.952 45 H 0.122 0.878 46 H 0.103 0.897 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.822 13.761 11.988 21.745 hybrid contribution 0.431 -0.696 0.039 0.819 sum -11.391 13.065 12.027 21.097 Atomic orbital electron populations 1.21914 0.73702 1.04841 1.03490 1.47642 1.06147 1.02467 1.57413 1.77574 1.01300 1.07056 1.28572 1.19474 0.86014 0.88214 1.00441 1.84916 1.39340 1.68506 1.33321 1.20158 0.95176 0.93064 1.16312 1.20614 0.90631 0.90591 1.01747 1.20652 0.93958 0.85859 1.00083 1.61476 1.03303 1.03061 1.56103 1.22099 0.99495 0.87811 1.00194 1.20066 0.87608 0.82416 0.80548 1.90696 1.34382 1.67904 1.45398 1.48229 1.22344 1.05281 1.57273 1.19334 0.84745 0.90764 0.92351 1.21413 1.06375 1.35175 0.93727 0.92367 1.24905 0.94838 0.95431 0.98748 1.69914 1.10293 1.36992 1.36081 0.86529 0.78417 0.77526 0.85140 1.20514 1.21229 1.19947 1.21296 0.89601 0.99723 0.90286 1.19910 0.91735 1.00158 0.97396 1.29104 0.94312 0.93436 0.93300 1.81201 1.11553 1.09933 1.09574 1.22347 0.93400 0.98543 0.93079 1.19969 0.93247 0.90782 1.02755 0.90501 0.89040 0.89202 0.74914 0.88789 0.92448 0.88060 0.92252 0.93530 0.94775 0.92682 0.90797 0.88699 0.86414 0.87762 0.95249 0.87848 0.89747 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.33 59.85 0.68 1.30 16 2 N -0.35 -3.92 4.00 -63.87 -0.26 -4.17 16 3 N -0.31 -4.26 12.61 30.44 0.38 -3.87 16 4 C 0.26 3.55 8.45 -17.28 -0.15 3.40 16 5 O -0.46 -5.31 13.66 -19.73 -0.27 -5.58 16 6 C -0.23 -3.12 6.00 -104.92 -0.63 -3.74 16 7 C 0.09 1.09 6.81 -82.36 -0.56 0.53 16 8 C 0.12 1.19 5.45 -4.71 -0.03 1.17 16 9 N -0.51 -6.51 4.36 -236.73 -1.03 -7.54 16 10 C 0.04 0.41 4.00 -4.98 -0.02 0.39 16 11 C 0.51 8.59 7.23 -10.99 -0.08 8.52 16 12 O -0.51 -11.05 14.00 5.55 0.08 -10.97 16 13 N -0.60 -10.10 2.46 -175.05 -0.43 -10.53 16 14 C 0.25 5.58 5.16 -5.19 -0.03 5.55 16 15 C -0.53 -13.75 9.38 -34.44 -0.32 -14.08 16 16 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 19 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.12 1.40 5.17 -4.04 -0.02 1.38 16 24 C -0.05 -0.46 6.03 -29.52 -0.18 -0.64 16 25 C 0.22 2.37 15.43 -20.77 -0.32 2.05 16 26 N -0.45 -6.10 18.54 42.14 0.78 -5.32 16 27 C 0.05 0.68 5.08 -3.53 -0.02 0.66 16 28 C -0.03 -0.37 6.51 -27.53 -0.18 -0.55 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.09 0.37 7.65 -51.93 -0.40 -0.03 16 32 H 0.40 2.39 9.06 45.56 0.41 2.80 16 33 H 0.09 0.76 7.83 -51.92 -0.41 0.35 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 1.00 7.34 -51.92 -0.38 0.62 16 36 H 0.06 0.51 7.20 -51.93 -0.37 0.14 16 37 H 0.05 1.21 7.42 -51.93 -0.39 0.83 16 38 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 41 H 0.09 1.24 8.07 -51.93 -0.42 0.83 16 42 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.10 0.73 7.25 -51.92 -0.38 0.36 16 44 H 0.03 0.32 8.07 -51.93 -0.42 -0.10 16 45 H 0.10 1.53 5.74 -51.93 -0.30 1.23 16 46 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -36.88 396.41 -6.88 -43.76 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.88 Total: -0.94 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.95 Total: 7.54 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.18 Total: -55.83 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.19 Total: -16.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.88 -6.88 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422161005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.427 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds