Wall clock time and date at job start Wed Apr 1 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40350 * 126.03978 * 2 1 4 4 C 1.31431 * 108.26634 * 179.90881 * 3 2 1 5 5 O 1.35996 * 126.04374 * 179.97438 * 4 3 2 6 6 C 1.39429 * 107.91261 * 359.97184 * 4 3 2 7 7 C 1.34130 * 126.04192 * 179.97438 * 2 1 3 8 8 C 1.50815 * 128.76116 * 0.20681 * 7 2 1 9 9 N 1.47290 * 108.26791 * 163.57507 * 8 7 2 10 10 C 1.46891 * 111.00012 * 175.67018 * 9 8 7 11 11 C 1.50702 * 109.47259 * 170.00079 * 10 9 8 12 12 O 1.21283 * 119.99478 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00430 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00036 * 179.72648 * 13 11 10 15 15 C 1.50703 * 109.47126 * 270.27831 * 14 13 11 16 16 H 1.08002 * 119.99820 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00045 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46767 * 89.99886 * 19 17 15 21 21 H 1.48493 * 109.47240 * 210.00027 * 19 17 15 22 22 H 1.48500 * 109.46974 * 329.99973 * 19 17 15 23 23 C 1.46506 * 119.99969 * 0.02562 * 13 11 10 24 24 C 1.53000 * 109.46992 * 269.72101 * 23 13 11 25 25 C 1.47196 * 109.47137 * 179.97438 * 24 23 13 26 26 N 9.43528 * 86.60647 * 167.46142 * 2 1 3 27 27 C 1.46946 * 111.47960 * 51.36646 * 9 8 7 28 28 C 1.50873 * 128.76631 * 180.27766 * 6 4 3 29 29 H 1.08990 * 109.47572 * 270.01158 * 1 2 3 30 30 H 1.09007 * 109.46593 * 30.01263 * 1 2 3 31 31 H 1.09005 * 109.46533 * 150.00443 * 1 2 3 32 32 H 0.96701 * 113.99820 * 90.01770 * 5 4 3 33 33 H 1.09008 * 109.70405 * 43.88322 * 8 7 2 34 34 H 1.09000 * 109.74063 * 283.29545 * 8 7 2 35 35 H 1.09009 * 109.47292 * 50.00575 * 10 9 8 36 36 H 1.09001 * 109.47406 * 290.00224 * 10 9 8 37 37 H 1.08994 * 109.47173 * 30.28203 * 14 13 11 38 38 H 1.09005 * 109.47077 * 150.28374 * 14 13 11 39 39 H 0.96995 * 119.99689 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46803 * 29.71536 * 23 13 11 41 41 H 1.09000 * 109.47214 * 149.72329 * 23 13 11 42 42 H 1.09000 * 109.47214 * 300.00285 * 24 23 13 43 43 H 1.09008 * 109.47142 * 59.99450 * 24 23 13 44 44 H 1.08997 * 109.44249 * 48.49297 * 27 9 8 45 45 H 1.09001 * 109.43980 * 168.38139 * 27 9 8 46 46 H 1.09007 * 109.78787 * 283.66745 * 28 6 4 47 47 H 1.08996 * 109.79100 * 44.44660 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2908 1.1349 0.0000 4 6 3.5424 0.7337 0.0020 5 8 4.6401 1.5366 0.0022 6 6 3.5458 -0.6606 0.0039 7 6 2.2543 -1.0846 0.0005 8 6 1.8589 -2.5400 -0.0031 9 7 3.0337 -3.3365 -0.3965 10 6 2.7440 -4.7746 -0.3206 11 6 3.8699 -5.5481 -0.9572 12 8 4.8202 -4.9593 -1.4274 13 7 3.8212 -6.8942 -1.0032 14 6 4.9128 -7.6458 -1.6274 15 6 4.6208 -7.8306 -3.0943 16 1 3.7127 -7.4288 -3.5190 17 6 5.5125 -8.5136 -3.8939 18 7 6.6181 -9.0033 -3.3767 19 14 5.1504 -8.7434 -5.7121 20 1 5.7185 -7.6049 -6.4776 21 1 5.7635 -10.0114 -6.1825 22 1 3.6811 -8.7966 -5.9212 23 6 2.6735 -7.6055 -0.4347 24 6 2.9499 -7.9271 1.0354 25 6 1.7966 -8.6412 1.6067 26 7 0.9066 -9.1941 2.0448 27 6 4.2118 -2.9932 0.4119 28 6 4.7244 -1.6024 0.0123 29 1 -0.3634 0.0002 1.0275 30 1 -0.3633 0.8900 -0.5141 31 1 -0.3632 -0.8901 -0.5138 32 1 4.9566 1.7697 0.8856 33 1 1.0508 -2.6996 -0.7171 34 1 1.5318 -2.8351 0.9939 35 1 1.8140 -4.9863 -0.8482 36 1 2.6448 -5.0707 0.7237 37 1 5.8465 -7.0960 -1.5092 38 1 5.0024 -8.6212 -1.1491 39 1 7.2452 -9.4841 -3.9392 40 1 1.7847 -6.9788 -0.5086 41 1 2.5114 -8.5323 -0.9851 42 1 3.8388 -8.5537 1.1093 43 1 3.1121 -7.0002 1.5858 44 1 3.9392 -2.9901 1.4673 45 1 4.9957 -3.7314 0.2425 46 1 5.1700 -1.6448 -0.9816 47 1 5.4655 -1.2598 0.7344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001422161005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:27 Heat of formation + Delta-G solvation = 25.149672 kcal Electronic energy + Delta-G solvation = -30575.018424 eV Core-core repulsion = 26373.721872 eV Total energy + Delta-G solvation = -4201.296552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.62990 -40.82837 -38.63075 -38.17659 -37.78582 -36.51851 -34.83552 -34.18841 -32.80390 -32.07613 -31.08224 -29.79050 -27.93365 -27.17676 -25.29822 -25.12032 -24.16100 -23.16500 -22.10439 -19.93888 -19.88976 -18.87420 -18.68523 -18.26323 -17.90140 -17.56026 -17.06026 -16.64981 -16.43762 -16.20570 -15.72089 -15.62626 -15.51105 -15.37293 -15.05226 -14.70405 -14.48864 -14.39703 -14.24222 -14.05398 -13.58371 -13.50108 -13.49236 -13.37954 -13.22197 -13.03768 -12.86660 -12.74089 -12.68989 -12.64508 -12.49919 -12.14029 -12.12892 -11.92629 -11.74340 -11.58494 -11.11968 -10.54783 -10.38597 -10.14771 -9.38507 -9.23319 -9.13857 -8.13681 -6.24983 0.71031 1.30015 1.41635 1.44891 1.52435 1.58240 1.76264 1.90289 2.01415 2.29717 2.46763 2.89222 3.02676 3.17474 3.24099 3.53002 3.81670 3.94080 4.05895 4.11821 4.19798 4.29908 4.35948 4.38244 4.39942 4.48587 4.54627 4.57074 4.66859 4.68503 4.73599 4.88330 4.92133 5.04800 5.13443 5.15786 5.19015 5.26542 5.41495 5.41688 5.68316 5.90322 5.97405 6.05506 6.15907 6.19387 6.56579 6.66974 6.74064 6.83928 6.92415 7.41229 7.67305 8.92576 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.002955 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.456953 B = 9472.264651 C =11198.283797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.346 5.346 3 N -0.343 5.343 4 C 0.249 3.751 5 O -0.472 6.472 6 C -0.266 4.266 7 C 0.099 3.901 8 C 0.128 3.872 9 N -0.545 5.545 10 C 0.048 3.952 11 C 0.500 3.500 12 O -0.569 6.569 13 N -0.600 5.600 14 C 0.262 3.738 15 C -0.535 4.535 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.953 3.047 20 H -0.286 1.286 21 H -0.280 1.280 22 H -0.262 1.262 23 C 0.113 3.887 24 C -0.038 4.038 25 C 0.247 3.753 26 N -0.491 5.491 27 C 0.062 3.938 28 C -0.024 4.024 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.415 0.585 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.003 0.997 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 13.303 13.977 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.131 5.131 3 N -0.178 5.178 4 C 0.046 3.954 5 O -0.278 6.278 6 C -0.279 4.279 7 C -0.032 4.032 8 C -0.001 4.001 9 N -0.271 5.271 10 C -0.082 4.082 11 C 0.289 3.711 12 O -0.448 6.448 13 N -0.331 5.331 14 C 0.141 3.859 15 C -0.574 4.574 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.567 5.567 19 Si 0.779 3.221 20 H -0.213 1.213 21 H -0.206 1.206 22 H -0.187 1.187 23 C -0.011 4.011 24 C -0.079 4.079 25 C -0.070 4.070 26 N -0.170 5.170 27 C -0.066 4.066 28 C -0.063 4.063 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.274 0.726 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.021 0.979 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.129 0.871 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.156 0.844 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.205 13.801 13.258 24.443 hybrid contribution 1.460 -0.652 -0.341 1.635 sum -13.745 13.149 12.917 22.993 Atomic orbital electron populations 1.22372 0.70916 1.06317 1.05429 1.48034 1.07549 1.01560 1.55942 1.77496 1.01647 1.08751 1.29893 1.19689 0.86358 0.88666 1.00677 1.84845 1.39169 1.68415 1.35390 1.20270 0.96057 0.93001 1.18534 1.20996 0.90232 0.91868 1.00106 1.20832 0.92958 0.83555 1.02707 1.61330 1.04432 1.03989 1.57343 1.22071 0.97362 0.86482 1.02297 1.21133 0.88269 0.82146 0.79576 1.90685 1.37071 1.69020 1.47974 1.48080 1.22326 1.05654 1.57089 1.18733 0.85265 0.90551 0.91345 1.21788 1.05880 1.34164 0.95597 0.92813 1.25686 0.94862 0.95597 1.02673 1.70018 1.11204 1.38058 1.37408 0.85629 0.78793 0.77195 0.80478 1.21263 1.20587 1.18655 1.21526 0.88832 0.99452 0.91328 1.19847 0.90797 1.01510 0.95739 1.29154 0.93579 0.92241 0.92072 1.81251 1.13070 1.11462 1.11168 1.22162 0.93071 0.96926 0.94408 1.19846 0.93762 0.91809 1.00898 0.88276 0.88882 0.86490 0.72560 0.86416 0.88835 0.85178 0.87894 0.97906 0.94933 0.92729 0.87054 0.90160 0.86511 0.84386 0.92711 0.90803 0.93613 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.33 127.77 1.45 2.22 16 2 N -0.35 -6.87 4.00 -356.00 -1.42 -8.30 16 3 N -0.34 -9.14 12.61 -170.72 -2.15 -11.29 16 4 C 0.25 6.76 8.45 85.04 0.72 7.48 16 5 O -0.47 -11.25 13.66 -93.51 -1.28 -12.53 16 6 C -0.27 -6.93 6.00 -20.06 -0.12 -7.05 16 7 C 0.10 2.07 6.81 41.71 0.28 2.35 16 8 C 0.13 1.86 5.45 85.52 0.47 2.33 16 9 N -0.55 -12.19 4.36 -902.88 -3.94 -16.13 16 10 C 0.05 0.91 4.00 85.56 0.34 1.25 16 11 C 0.50 16.30 7.23 87.66 0.63 16.93 16 12 O -0.57 -25.46 14.00 -3.04 -0.04 -25.50 16 13 N -0.60 -19.53 2.46 -826.14 -2.03 -21.56 16 14 C 0.26 12.15 5.16 85.63 0.44 12.59 16 15 C -0.54 -28.27 9.38 25.60 0.24 -28.03 16 16 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 17 C 0.01 0.59 5.46 84.65 0.46 1.05 16 18 N -0.93 -53.38 13.29 21.45 0.28 -53.10 16 19 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 23 C 0.11 2.34 5.17 86.38 0.45 2.79 16 24 C -0.04 -0.55 6.03 28.79 0.17 -0.38 16 25 C 0.25 4.59 15.43 89.44 1.38 5.97 16 26 N -0.49 -12.26 18.54 20.00 0.37 -11.89 16 27 C 0.06 1.48 5.08 86.47 0.44 1.92 16 28 C -0.02 -0.65 6.51 30.08 0.20 -0.45 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.80 8.14 -2.38 -0.02 0.79 16 31 H 0.12 0.39 7.65 -2.38 -0.02 0.37 16 32 H 0.42 5.18 9.06 -74.06 -0.67 4.51 16 33 H 0.12 1.20 7.83 -2.38 -0.02 1.18 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.13 1.77 7.34 -2.38 -0.02 1.75 16 36 H 0.10 1.09 7.20 -2.39 -0.02 1.08 16 37 H 0.00 0.15 7.42 -2.39 -0.02 0.14 16 38 H 0.03 1.50 8.07 -2.38 -0.02 1.48 16 39 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.11 1.51 6.43 -2.39 -0.02 1.49 16 41 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 42 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.14 1.19 7.25 -2.38 -0.02 1.17 16 44 H 0.05 1.01 8.07 -2.39 -0.02 0.99 16 45 H 0.07 2.23 5.74 -2.39 -0.01 2.21 16 46 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -86.54 396.41 -0.28 -86.82 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.35 Total: 6.98 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 7.55 Total: 20.96 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -8.89 Total: -122.27 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.32 Total: -38.03 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -86.54 -0.28 -86.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422161005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.968 kcal (2) G-P(sol) polarization free energy of solvation -86.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds