Wall clock time and date at job start Wed Apr 1 2020 04:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47365 * 2 1 4 4 C 1.46499 * 119.99824 * 270.00089 * 3 2 1 5 5 C 1.50699 * 109.47251 * 269.99874 * 4 3 2 6 6 H 1.07996 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00238 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00328 * 179.97438 * 7 5 4 9 9 Si 1.86810 * 119.99982 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47023 * 89.99684 * 9 7 5 11 11 H 1.48499 * 109.47146 * 210.00163 * 9 7 5 12 12 H 1.48500 * 109.46664 * 330.00056 * 9 7 5 13 13 C 1.34774 * 120.00002 * 90.00105 * 3 2 1 14 14 O 1.21288 * 119.99830 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00125 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46940 * 180.02562 * 15 13 3 17 17 C 1.46903 * 110.99652 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46734 * 179.97438 * 17 16 15 19 19 H 1.08998 * 112.85273 * 316.19358 * 18 17 16 20 20 C 1.53777 * 113.61195 * 87.50708 * 18 17 16 21 21 C 1.53785 * 87.08241 * 139.97738 * 20 18 17 22 22 H 1.09002 * 113.61570 * 220.01842 * 21 20 18 23 23 N 1.46500 * 113.68813 * 89.12417 * 21 20 18 24 24 C 1.34781 * 119.99985 * 105.94035 * 23 21 20 25 25 O 1.21280 * 119.99799 * 359.97438 * 24 23 21 26 26 C 1.50701 * 119.99932 * 179.97438 * 24 23 21 27 27 F 1.39898 * 109.46754 * 184.99891 * 26 24 23 28 28 F 1.39901 * 109.47308 * 304.99731 * 26 24 23 29 29 C 1.53781 * 87.08241 * 334.56547 * 21 20 18 30 30 H 1.09002 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47169 * 300.00393 * 1 2 3 32 32 H 1.08999 * 109.47345 * 59.99777 * 1 2 3 33 33 H 1.09001 * 109.47169 * 239.99607 * 2 1 3 34 34 H 1.08999 * 109.47345 * 120.00223 * 2 1 3 35 35 H 1.09006 * 109.47165 * 30.00195 * 4 3 2 36 36 H 1.09004 * 109.46968 * 149.99658 * 4 3 2 37 37 H 0.96996 * 119.99813 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47009 * 60.00340 * 15 13 3 39 39 H 1.08995 * 109.47104 * 300.00118 * 15 13 3 40 40 H 1.00893 * 110.99589 * 56.04991 * 16 15 13 41 41 H 1.09005 * 109.46863 * 60.00498 * 17 16 15 42 42 H 1.08994 * 109.47377 * 299.99972 * 17 16 15 43 43 H 1.08999 * 113.61947 * 25.43164 * 20 18 17 44 44 H 1.08997 * 113.61348 * 254.52379 * 20 18 17 45 45 H 0.96998 * 120.00149 * 285.93056 * 23 21 20 46 46 H 1.08996 * 109.47014 * 64.99680 * 26 24 23 47 47 H 1.09000 * 113.61578 * 139.97748 * 29 21 20 48 48 H 1.08997 * 113.61673 * 270.88717 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1841 -3.2569 9 14 3.0130 3.4359 -3.9288 10 1 3.1156 4.8559 -3.5070 11 1 3.4067 3.3136 -5.3555 12 1 1.6135 2.9692 -3.7597 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9913 1.3063 2.4723 16 7 2.3091 2.2066 3.5888 17 6 2.0757 1.5463 4.8802 18 6 2.4175 2.5126 6.0161 19 1 3.3470 3.0555 5.8447 20 6 1.2432 3.4139 6.4324 21 6 1.6977 3.2010 7.8861 22 1 0.8730 3.0683 8.5864 23 7 2.6814 4.1846 8.3452 24 6 2.3119 5.1587 9.2004 25 8 1.1649 5.2210 9.5894 26 6 3.3240 6.1702 9.6732 27 9 2.7381 7.0025 10.6330 28 9 4.4185 5.5062 10.2374 29 6 2.3235 1.8780 7.4139 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5816 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 5.7176 2.5746 -4.0828 38 1 2.6212 0.4186 2.5302 39 1 0.9433 1.0126 2.5298 40 1 1.7841 3.0655 3.5214 41 1 2.7069 0.6607 4.9547 42 1 1.0285 1.2535 4.9545 43 1 0.2650 2.9855 6.2137 44 1 1.3412 4.4443 6.0908 45 1 3.5987 4.1349 8.0339 46 1 3.6597 6.7707 8.8278 47 1 3.2937 1.6686 7.8644 48 1 1.6408 1.0298 7.4632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001422878678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:45 Heat of formation + Delta-G solvation = -143.795881 kcal Electronic energy + Delta-G solvation = -30015.567865 eV Core-core repulsion = 25356.256098 eV Total energy + Delta-G solvation = -4659.311767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.66098 -47.68580 -40.78271 -39.31955 -38.82959 -35.81000 -35.19301 -33.79897 -32.70315 -30.41546 -29.54907 -28.50211 -27.35416 -26.19635 -24.97029 -23.01524 -22.62337 -21.86873 -21.83565 -19.76197 -19.05466 -18.39431 -18.27581 -17.84538 -17.02536 -16.78059 -16.39352 -16.16072 -15.86997 -15.37368 -15.29942 -14.76621 -14.74106 -14.45882 -14.20856 -14.04388 -14.01415 -13.81126 -13.61564 -13.52140 -13.21677 -12.92456 -12.79711 -12.64929 -12.63071 -12.34318 -12.08764 -11.93968 -11.72886 -11.43832 -11.27138 -11.00800 -10.89977 -10.72851 -10.57067 -10.51417 -10.47651 -10.16827 -9.69908 -9.54531 -9.02864 -8.59377 -8.41455 -7.73292 -6.08962 -4.07510 1.59214 2.01169 3.27948 3.29282 3.32352 3.33964 3.35683 3.53387 3.60156 4.00952 4.02084 4.05110 4.17182 4.33356 4.38838 4.41123 4.59608 4.95492 5.06615 5.16249 5.18451 5.22239 5.24856 5.28371 5.32918 5.37777 5.45037 5.50941 5.57318 5.61382 5.67306 5.73151 5.73755 5.92475 6.09470 6.10746 6.34350 6.64630 6.65372 6.86550 6.97030 7.30726 7.33848 7.35590 7.60936 8.24776 8.46905 8.93194 8.99413 9.51342 11.04450 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.001788 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.395655 B =15654.625805 C =16686.567959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.506 3.494 14 O -0.528 6.528 15 C 0.043 3.957 16 N -0.671 5.671 17 C 0.070 3.930 18 C -0.108 4.108 19 H 0.103 0.897 20 C -0.149 4.149 21 C 0.116 3.884 22 H 0.105 0.895 23 N -0.694 5.694 24 C 0.476 3.524 25 O -0.501 6.501 26 C 0.258 3.742 27 F -0.175 7.175 28 F -0.188 7.188 29 C -0.137 4.137 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.349 0.651 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.409 0.591 46 H 0.140 0.860 47 H 0.077 0.923 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 -1.333 23.818 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.404 6.404 15 C -0.090 4.090 16 N -0.304 5.304 17 C -0.060 4.060 18 C -0.126 4.126 19 H 0.121 0.879 20 C -0.188 4.188 21 C 0.012 3.988 22 H 0.123 0.877 23 N -0.346 5.346 24 C 0.257 3.743 25 O -0.374 6.374 26 C 0.201 3.799 27 F -0.156 7.156 28 F -0.169 7.169 29 C -0.176 4.176 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.169 0.831 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.245 0.755 46 H 0.157 0.843 47 H 0.096 0.904 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.228 -0.771 23.961 25.346 hybrid contribution -0.853 0.403 -0.783 1.227 sum -9.081 -0.368 23.178 24.896 Atomic orbital electron populations 1.22234 0.96870 1.01549 1.02122 1.21430 0.93274 0.83965 1.03117 1.47939 1.64368 1.13374 1.07022 1.19628 0.97300 0.93323 0.80080 1.21328 0.95339 1.32819 1.07077 0.90759 1.24867 0.94999 0.95836 0.97387 1.69897 1.15106 1.45025 1.23558 0.86849 0.81423 0.81619 0.79763 1.19935 1.21093 1.19144 1.20224 0.78554 0.87104 0.84898 1.90672 1.44726 1.18079 1.86940 1.21878 0.99889 0.96819 0.90377 1.60080 1.63057 1.07115 1.00130 1.21947 0.98689 0.96990 0.88329 1.22668 0.99606 0.97084 0.93279 0.87929 1.23540 0.99033 1.01271 0.94943 1.21948 0.92085 0.88473 0.96324 0.87719 1.45582 1.14170 1.28736 1.46107 1.21076 0.89848 0.83012 0.80383 1.90830 1.19090 1.71819 1.55687 1.21661 0.81229 0.87905 0.89134 1.93072 1.84618 1.71535 1.66421 1.93069 1.54782 1.81811 1.87227 1.23343 1.02105 0.96271 0.95852 0.91977 0.93180 0.92203 0.89686 0.91484 0.95347 0.94691 0.92586 0.88560 0.93035 0.83130 0.90719 0.95168 0.88929 0.90658 0.75480 0.84266 0.90392 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.57 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.22 5.23 4.23 -5.19 -0.02 5.21 16 5 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 13 C 0.51 9.91 7.71 -10.99 -0.08 9.83 16 14 O -0.53 -12.69 15.78 5.55 0.09 -12.61 16 15 C 0.04 0.58 4.72 -4.97 -0.02 0.56 16 16 N -0.67 -8.55 6.13 -115.06 -0.70 -9.25 16 17 C 0.07 0.60 5.52 -3.82 -0.02 0.58 16 18 C -0.11 -0.75 3.79 -89.80 -0.34 -1.09 16 19 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.15 -1.03 7.43 -25.92 -0.19 -1.23 16 21 C 0.12 0.76 4.30 -67.12 -0.29 0.47 16 22 H 0.10 0.81 7.50 -51.93 -0.39 0.42 16 23 N -0.69 -4.17 5.27 -53.01 -0.28 -4.45 16 24 C 0.48 3.86 7.63 -10.98 -0.08 3.78 16 25 O -0.50 -6.17 16.24 5.56 0.09 -6.08 16 26 C 0.26 1.56 5.72 36.01 0.21 1.76 16 27 F -0.18 -1.59 16.95 2.25 0.04 -1.55 16 28 F -0.19 -1.27 17.32 2.25 0.04 -1.23 16 29 C -0.14 -0.72 7.38 -25.91 -0.19 -0.91 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.56 7.22 -51.93 -0.37 0.18 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 35 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 36 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.10 1.22 7.40 -51.93 -0.38 0.84 16 39 H 0.05 0.58 7.18 -51.93 -0.37 0.21 16 40 H 0.35 4.61 8.43 -39.30 -0.33 4.28 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.23 7.84 -51.93 -0.41 -0.17 16 43 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.41 1.56 8.71 -40.82 -0.36 1.20 16 46 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 0.44 8.10 -51.93 -0.42 0.02 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -37.19 404.47 -7.56 -44.75 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.47 Total: 1.07 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.13 Total: 5.47 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.64 Total: -52.73 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.18 Total: -18.68 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.19 -7.56 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422878678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.045 kcal (2) G-P(sol) polarization free energy of solvation -37.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds