Wall clock time and date at job start Wed Apr 1 2020 04:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47365 * 2 1 4 4 C 1.46499 * 119.99824 * 270.00089 * 3 2 1 5 5 C 1.50699 * 109.47251 * 269.99874 * 4 3 2 6 6 H 1.07996 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00238 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00328 * 179.97438 * 7 5 4 9 9 Si 1.86810 * 119.99982 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47023 * 89.99684 * 9 7 5 11 11 H 1.48499 * 109.47146 * 210.00163 * 9 7 5 12 12 H 1.48500 * 109.46664 * 330.00056 * 9 7 5 13 13 C 1.34774 * 120.00002 * 90.00105 * 3 2 1 14 14 O 1.21288 * 119.99830 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00125 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46940 * 180.02562 * 15 13 3 17 17 C 1.46903 * 110.99652 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46734 * 179.97438 * 17 16 15 19 19 H 1.08998 * 112.85273 * 316.19358 * 18 17 16 20 20 C 1.53777 * 113.61195 * 87.50708 * 18 17 16 21 21 C 1.53785 * 87.08241 * 139.97738 * 20 18 17 22 22 H 1.09002 * 113.61570 * 220.01842 * 21 20 18 23 23 N 1.46500 * 113.68813 * 89.12417 * 21 20 18 24 24 C 1.34781 * 119.99985 * 105.94035 * 23 21 20 25 25 O 1.21280 * 119.99799 * 359.97438 * 24 23 21 26 26 C 1.50701 * 119.99932 * 179.97438 * 24 23 21 27 27 F 1.39898 * 109.46754 * 184.99891 * 26 24 23 28 28 F 1.39901 * 109.47308 * 304.99731 * 26 24 23 29 29 C 1.53781 * 87.08241 * 334.56547 * 21 20 18 30 30 H 1.09002 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47169 * 300.00393 * 1 2 3 32 32 H 1.08999 * 109.47345 * 59.99777 * 1 2 3 33 33 H 1.09001 * 109.47169 * 239.99607 * 2 1 3 34 34 H 1.08999 * 109.47345 * 120.00223 * 2 1 3 35 35 H 1.09006 * 109.47165 * 30.00195 * 4 3 2 36 36 H 1.09004 * 109.46968 * 149.99658 * 4 3 2 37 37 H 0.96996 * 119.99813 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47009 * 60.00340 * 15 13 3 39 39 H 1.08995 * 109.47104 * 300.00118 * 15 13 3 40 40 H 1.00893 * 110.99589 * 56.04991 * 16 15 13 41 41 H 1.09005 * 109.46863 * 60.00498 * 17 16 15 42 42 H 1.08994 * 109.47377 * 299.99972 * 17 16 15 43 43 H 1.08999 * 113.61947 * 25.43164 * 20 18 17 44 44 H 1.08997 * 113.61348 * 254.52379 * 20 18 17 45 45 H 0.96998 * 120.00149 * 285.93056 * 23 21 20 46 46 H 1.08996 * 109.47014 * 64.99680 * 26 24 23 47 47 H 1.09000 * 113.61578 * 139.97748 * 29 21 20 48 48 H 1.08997 * 113.61673 * 270.88717 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1841 -3.2569 9 14 3.0130 3.4359 -3.9288 10 1 3.1156 4.8559 -3.5070 11 1 3.4067 3.3136 -5.3555 12 1 1.6135 2.9692 -3.7597 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9913 1.3063 2.4723 16 7 2.3091 2.2066 3.5888 17 6 2.0757 1.5463 4.8802 18 6 2.4175 2.5126 6.0161 19 1 3.3470 3.0555 5.8447 20 6 1.2432 3.4139 6.4324 21 6 1.6977 3.2010 7.8861 22 1 0.8730 3.0683 8.5864 23 7 2.6814 4.1846 8.3452 24 6 2.3119 5.1587 9.2004 25 8 1.1649 5.2210 9.5894 26 6 3.3240 6.1702 9.6732 27 9 2.7381 7.0025 10.6330 28 9 4.4185 5.5062 10.2374 29 6 2.3235 1.8780 7.4139 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5816 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1384 37 1 5.7176 2.5746 -4.0828 38 1 2.6212 0.4186 2.5302 39 1 0.9433 1.0126 2.5298 40 1 1.7841 3.0655 3.5214 41 1 2.7069 0.6607 4.9547 42 1 1.0285 1.2535 4.9545 43 1 0.2650 2.9855 6.2137 44 1 1.3412 4.4443 6.0908 45 1 3.5987 4.1349 8.0339 46 1 3.6597 6.7707 8.8278 47 1 3.2937 1.6686 7.8644 48 1 1.6408 1.0298 7.4632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001422878678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:44 Heat of formation + Delta-G solvation = -172.558094 kcal Electronic energy + Delta-G solvation = -30016.815088 eV Core-core repulsion = 25356.256098 eV Total energy + Delta-G solvation = -4660.558990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.21186 -48.25365 -41.38709 -40.73962 -39.55325 -37.09082 -36.37473 -34.85917 -34.44864 -31.91948 -30.51660 -29.53224 -28.51560 -26.72698 -26.05339 -24.37529 -23.72533 -23.05628 -22.43531 -20.39862 -19.79821 -19.59169 -19.10325 -18.78722 -18.40887 -18.05532 -17.50990 -17.05384 -16.79859 -16.40031 -16.10688 -16.02461 -15.79356 -15.44444 -15.11695 -15.01598 -14.71057 -14.65917 -14.58722 -14.57213 -14.32942 -14.08603 -13.83562 -13.76698 -13.45958 -13.38248 -13.20472 -13.19115 -12.98688 -12.65383 -12.52742 -12.37289 -12.03293 -11.93860 -11.80351 -11.73473 -11.49524 -11.16690 -11.08784 -10.82762 -10.57904 -10.27568 -9.42760 -9.28052 -8.33425 -6.38056 0.97002 1.32074 1.36255 1.44469 1.48206 1.84169 2.27037 2.30969 2.86043 3.00683 3.04399 3.21037 3.50369 3.55782 3.66894 3.73146 3.75149 3.88752 3.95870 4.12359 4.29514 4.44428 4.45060 4.48618 4.61577 4.65306 4.72669 4.80561 4.81614 4.83866 4.90794 4.91968 5.01081 5.02184 5.06336 5.15163 5.18347 5.39113 5.47952 5.55136 5.67150 6.02190 6.12151 6.26061 6.40233 6.63396 6.77136 6.77280 7.22847 7.48173 8.83516 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.001788 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.395655 B =15654.625805 C =16686.567959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.226 3.774 5 C -0.533 4.533 6 H 0.028 0.972 7 C 0.009 3.991 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.239 1.239 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.058 3.942 16 N -0.693 5.693 17 C 0.072 3.928 18 C -0.105 4.105 19 H 0.093 0.907 20 C -0.147 4.147 21 C 0.112 3.888 22 H 0.093 0.907 23 N -0.681 5.681 24 C 0.473 3.527 25 O -0.550 6.550 26 C 0.260 3.740 27 F -0.194 7.194 28 F -0.190 7.190 29 C -0.120 4.120 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.268 0.732 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.344 0.656 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.422 0.578 46 H 0.187 0.813 47 H 0.087 0.913 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 -2.493 24.375 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.104 3.896 5 C -0.572 4.572 6 H 0.046 0.954 7 C -0.189 4.189 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.073 4.073 16 N -0.325 5.325 17 C -0.056 4.056 18 C -0.124 4.124 19 H 0.111 0.889 20 C -0.186 4.186 21 C 0.007 3.993 22 H 0.111 0.889 23 N -0.333 5.333 24 C 0.255 3.745 25 O -0.428 6.428 26 C 0.204 3.796 27 F -0.176 7.176 28 F -0.172 7.172 29 C -0.158 4.158 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.163 0.837 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.260 0.740 46 H 0.203 0.797 47 H 0.106 0.894 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.990 -2.009 24.530 26.562 hybrid contribution -0.211 0.682 -0.916 1.161 sum -10.201 -1.326 23.614 25.758 Atomic orbital electron populations 1.22151 0.94009 1.03600 1.01994 1.21764 0.95539 0.81154 1.03946 1.48076 1.64343 1.15221 1.05800 1.19256 0.94676 0.92950 0.82761 1.21566 0.97113 1.31918 1.06603 0.95374 1.25870 0.96738 0.97269 0.99034 1.70051 1.17380 1.46625 1.24480 0.85710 0.80433 0.78982 0.77775 1.20262 1.20019 1.16197 1.21369 0.77026 0.86741 0.86609 1.90634 1.47185 1.20729 1.87911 1.21789 1.02123 0.96239 0.87194 1.60086 1.63720 1.07273 1.01451 1.22041 0.99914 0.97122 0.86571 1.22597 0.99055 0.96993 0.93742 0.88878 1.23534 0.99446 1.00576 0.95039 1.21972 0.92191 0.89399 0.95764 0.88937 1.45558 1.14750 1.27879 1.45116 1.21490 0.89606 0.83306 0.80079 1.90806 1.21179 1.73150 1.57620 1.21991 0.80373 0.87504 0.89732 1.93030 1.85054 1.72024 1.67442 1.93062 1.54680 1.81999 1.87427 1.23286 1.02802 0.95750 0.93959 0.88772 0.91989 0.93669 0.91163 0.88482 0.93561 0.96592 0.92319 0.87165 0.89603 0.83747 0.90103 0.93376 0.88321 0.92043 0.74026 0.79652 0.89420 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 71.98 0.74 -2.48 16 2 C 0.10 2.69 5.93 86.38 0.51 3.20 16 3 N -0.60 -23.55 2.46 -826.15 -2.03 -25.58 16 4 C 0.23 10.93 4.23 85.63 0.36 11.29 16 5 C -0.53 -31.40 9.94 25.60 0.25 -31.15 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.52 5.47 84.65 0.46 0.98 16 8 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 9 Si 0.95 44.51 27.47 68.60 1.88 46.40 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 13 C 0.49 19.13 7.71 87.66 0.68 19.81 16 14 O -0.58 -28.77 15.78 -3.05 -0.05 -28.82 16 15 C 0.06 1.45 4.72 85.56 0.40 1.86 16 16 N -0.69 -16.49 6.13 -517.93 -3.17 -19.66 16 17 C 0.07 1.04 5.52 86.30 0.48 1.52 16 18 C -0.11 -1.25 3.79 -10.26 -0.04 -1.29 16 19 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 20 C -0.15 -1.85 7.43 31.12 0.23 -1.62 16 21 C 0.11 1.31 4.30 45.52 0.20 1.51 16 22 H 0.09 1.37 7.50 -2.39 -0.02 1.36 16 23 N -0.68 -7.44 5.27 -440.02 -2.32 -9.75 16 24 C 0.47 7.45 7.63 87.66 0.67 8.12 16 25 O -0.55 -13.83 16.24 -3.03 -0.05 -13.88 16 26 C 0.26 2.84 5.72 71.24 0.41 3.25 16 27 F -0.19 -3.47 16.95 44.97 0.76 -2.71 16 28 F -0.19 -2.32 17.32 44.97 0.78 -1.54 16 29 C -0.12 -0.95 7.38 31.12 0.23 -0.72 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.12 7.22 -2.39 -0.02 1.10 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 34 H 0.10 2.06 6.44 -2.39 -0.02 2.04 16 35 H 0.05 2.06 7.13 -2.38 -0.02 2.05 16 36 H 0.02 0.83 6.85 -2.39 -0.02 0.82 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.11 2.46 7.40 -2.39 -0.02 2.44 16 39 H 0.09 1.57 7.18 -2.39 -0.02 1.55 16 40 H 0.34 8.79 8.43 -89.70 -0.76 8.03 16 41 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.05 0.55 7.84 -2.39 -0.02 0.53 16 43 H 0.10 1.12 7.90 -2.39 -0.02 1.11 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.42 2.51 8.71 -92.71 -0.81 1.71 16 46 H 0.19 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.11 0.63 8.10 -2.39 -0.02 0.61 16 Total: -1.00 -86.58 404.47 1.06 -85.52 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.62 Total: 15.32 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.58 Total: 14.28 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -7.22 Total: -114.57 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.10 Total: -42.69 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 1.54 Total: -4.25 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -86.58 1.06 -85.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422878678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.041 kcal (2) G-P(sol) polarization free energy of solvation -86.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds