Wall clock time and date at job start Wed Apr 1 2020 04:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.46926 * 2 1 4 4 C 1.46497 * 120.00049 * 274.28540 * 3 2 1 5 5 C 1.50704 * 109.47356 * 270.00063 * 4 3 2 6 6 H 1.08009 * 119.99658 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00379 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00015 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99689 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46899 * 90.00328 * 9 7 5 11 11 H 1.48504 * 109.46781 * 209.99868 * 9 7 5 12 12 H 1.48496 * 109.47274 * 330.00213 * 9 7 5 13 13 C 1.34779 * 120.00014 * 94.28836 * 3 2 1 14 14 O 1.21283 * 120.00168 * 184.77354 * 13 3 2 15 15 C 1.50699 * 120.00004 * 4.77874 * 13 3 2 16 16 N 1.46903 * 109.47275 * 184.79594 * 15 13 3 17 17 C 1.46896 * 110.99929 * 184.14374 * 16 15 13 18 18 C 1.52999 * 115.55222 * 64.89118 * 17 16 15 19 19 N 1.46496 * 109.47152 * 32.25357 * 18 17 16 20 20 C 1.34782 * 119.99831 * 185.49567 * 19 18 17 21 21 O 1.21282 * 119.99773 * 355.36690 * 20 19 18 22 22 C 1.50698 * 119.99856 * 175.36245 * 20 19 18 23 23 C 1.52998 * 109.46879 * 154.34268 * 22 20 19 24 24 F 1.39897 * 109.47497 * 274.34516 * 22 20 19 25 25 F 1.39898 * 109.47056 * 34.34429 * 22 20 19 26 26 C 1.53005 * 117.49637 * 210.55541 * 17 16 15 27 27 C 1.53006 * 117.49756 * 279.21541 * 17 16 15 28 28 H 1.08996 * 109.47176 * 305.01156 * 1 2 3 29 29 H 1.09002 * 109.47231 * 65.01567 * 1 2 3 30 30 H 1.09002 * 109.47265 * 185.01200 * 1 2 3 31 31 H 1.09001 * 109.47171 * 239.99956 * 2 1 3 32 32 H 1.08997 * 109.46944 * 119.99838 * 2 1 3 33 33 H 1.08992 * 109.47149 * 30.00126 * 4 3 2 34 34 H 1.09007 * 109.47239 * 150.00733 * 4 3 2 35 35 H 0.97004 * 119.99815 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46957 * 64.79717 * 15 13 3 37 37 H 1.08994 * 109.47366 * 304.79561 * 15 13 3 38 38 H 1.00900 * 110.99762 * 308.09610 * 16 15 13 39 39 H 1.09004 * 109.46779 * 272.25453 * 18 17 16 40 40 H 1.09003 * 109.46984 * 152.25680 * 18 17 16 41 41 H 0.96998 * 120.00262 * 5.76967 * 19 18 17 42 42 H 1.09005 * 109.47268 * 60.00548 * 23 22 20 43 43 H 1.08999 * 109.47073 * 179.97438 * 23 22 20 44 44 H 1.08994 * 109.47492 * 300.00427 * 23 22 20 45 45 H 1.08997 * 117.50006 * 214.99961 * 26 17 16 46 46 H 1.09004 * 117.49886 * 0.02989 * 26 17 16 47 47 H 1.08995 * 117.49611 * 359.97438 * 27 17 16 48 48 H 1.08995 * 117.49533 * 144.97604 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1730 2.1034 -1.2651 5 6 3.5619 1.8788 -1.8052 6 1 4.2595 1.2596 -1.2606 7 6 3.9419 2.4629 -2.9949 8 7 5.1537 2.2665 -3.4664 9 14 2.7352 3.5333 -3.9371 10 1 2.8694 4.9428 -3.4892 11 1 3.0265 3.4460 -5.3907 12 1 1.3505 3.0620 -3.6806 13 6 2.3252 1.9874 1.1640 14 8 2.6463 3.1570 1.1723 15 6 2.2694 1.2121 2.4550 16 7 2.5327 2.1174 3.5816 17 6 2.5837 1.3782 4.8500 18 6 3.7309 0.3748 4.9835 19 7 4.8978 0.8663 4.2465 20 6 5.9957 0.0933 4.1299 21 8 6.0503 -0.9732 4.7048 22 6 7.1554 0.5543 3.2852 23 6 8.4442 -0.0991 3.7882 24 9 6.9364 0.1884 1.9528 25 9 7.2727 1.9455 3.3734 26 6 2.1386 2.1147 6.1152 27 6 1.2520 1.0212 5.5136 28 1 -0.3633 0.5896 0.8417 29 1 -0.3634 0.4341 -0.9315 30 1 -0.3634 -1.0237 0.0898 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4401 1.7377 -1.9842 34 1 2.0167 3.1690 -1.0968 35 1 5.4211 2.6777 -4.3033 36 1 3.0224 0.4242 2.4384 37 1 1.2808 0.7677 2.5695 38 1 3.3825 2.6409 3.4338 39 1 3.4216 -0.5872 4.5746 40 1 3.9893 0.2561 6.0358 41 1 4.8817 1.7495 3.8459 42 1 8.3529 -1.1831 3.7194 43 1 9.2830 0.2340 3.1769 44 1 8.6149 0.1859 4.8263 45 1 2.6630 1.8842 7.0425 46 1 1.8075 3.1475 6.0062 47 1 0.3383 1.3352 5.0092 48 1 1.1932 0.0713 6.0448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423167691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:08 Heat of formation + Delta-G solvation = -129.551822 kcal Electronic energy + Delta-G solvation = -32531.739945 eV Core-core repulsion = 27873.045846 eV Total energy + Delta-G solvation = -4658.694098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -49.28118 -47.27596 -40.33495 -39.35112 -38.36136 -35.45632 -34.71044 -33.33945 -32.59053 -31.80306 -30.34356 -28.42828 -27.93323 -25.89360 -24.42288 -22.99304 -22.78568 -21.99514 -20.99601 -19.96438 -18.94461 -18.40239 -17.91533 -17.20334 -16.93204 -16.75572 -16.08259 -15.99185 -15.74349 -15.53429 -15.04960 -14.63595 -14.39831 -14.32446 -14.13072 -13.68682 -13.58594 -13.49636 -13.46528 -13.34104 -13.19430 -12.87006 -12.81372 -12.63640 -12.46937 -12.18359 -12.14125 -12.11562 -11.70386 -11.67283 -11.39890 -10.97776 -10.93439 -10.75644 -10.51222 -10.38693 -10.18742 -10.15547 -9.55244 -9.53770 -9.11773 -8.66383 -8.58277 -7.73799 -6.07965 -4.07104 1.82126 2.29214 3.27362 3.29014 3.31266 3.35984 3.37770 3.54104 3.56321 3.73473 4.03514 4.21191 4.24347 4.35071 4.40089 4.63302 4.76520 4.97564 5.16208 5.18365 5.22739 5.25194 5.25947 5.29534 5.31142 5.40479 5.42538 5.47737 5.55664 5.59536 5.68351 5.69846 5.82253 5.94742 5.95340 6.14843 6.38436 6.62348 6.77490 6.80415 6.96751 7.13632 7.33289 7.47378 7.61210 8.22164 8.46977 8.90275 8.96882 9.52093 11.05238 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008879 B = 0.004123 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.766361 B = 6789.772511 C = 8831.417685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.591 5.591 4 C 0.217 3.783 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.532 6.532 15 C 0.040 3.960 16 N -0.629 5.629 17 C 0.010 3.990 18 C 0.128 3.872 19 N -0.711 5.711 20 C 0.491 3.509 21 O -0.504 6.504 22 C 0.280 3.720 23 C -0.182 4.182 24 F -0.171 7.171 25 F -0.187 7.187 26 C -0.150 4.150 27 C -0.148 4.148 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.352 0.648 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.408 0.592 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -6.517 19.506 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.323 5.323 4 C 0.096 3.904 5 C -0.569 4.569 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.409 6.409 15 C -0.092 4.092 16 N -0.263 5.263 17 C -0.083 4.083 18 C 0.002 3.998 19 N -0.365 5.365 20 C 0.272 3.728 21 O -0.378 6.378 22 C 0.240 3.760 23 C -0.239 4.239 24 F -0.152 7.152 25 F -0.168 7.168 26 C -0.188 4.188 27 C -0.186 4.186 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.174 0.826 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.246 0.754 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.689 -6.395 19.748 21.083 hybrid contribution 0.334 0.567 -1.221 1.387 sum -3.355 -5.828 18.527 19.710 Atomic orbital electron populations 1.22210 0.96566 1.01468 1.02445 1.21450 0.93600 0.83859 1.02988 1.47884 1.63778 1.13427 1.07227 1.19644 0.97615 0.93023 0.80077 1.21325 0.96983 1.31870 1.06673 0.90796 1.24844 0.95101 0.95867 0.97080 1.69901 1.18076 1.44414 1.21032 0.86862 0.81892 0.81758 0.79234 1.19897 1.21095 1.19098 1.20141 0.78097 0.87606 0.84717 1.90670 1.47521 1.16210 1.86482 1.21894 1.02810 0.94737 0.89716 1.60115 1.42949 1.24313 0.98926 1.21677 0.96015 0.99513 0.91087 1.21500 0.83658 0.97402 0.97207 1.46021 1.14585 1.20497 1.55432 1.20813 0.83997 0.85530 0.82441 1.90764 1.80245 1.21694 1.45123 1.21301 0.96944 0.77565 0.80209 1.22644 0.93694 1.03787 1.03819 1.93190 1.95874 1.91153 1.34957 1.93083 1.96972 1.30673 1.96101 1.23209 1.02424 0.98713 0.94418 1.23086 0.93665 0.99817 1.02013 0.92861 0.92167 0.92005 0.89779 0.91561 0.95286 0.94472 0.92576 0.92343 0.88395 0.82555 0.90186 0.90136 0.75448 0.88070 0.88812 0.88985 0.88383 0.87585 0.87592 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.63 5.94 -4.04 -0.02 1.60 16 3 N -0.59 -11.96 2.46 -175.06 -0.43 -12.39 16 4 C 0.22 5.30 4.29 -5.19 -0.02 5.27 16 5 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 6 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.51 10.08 7.70 -10.98 -0.08 9.99 16 14 O -0.53 -12.66 15.62 5.56 0.09 -12.57 16 15 C 0.04 0.58 4.41 -4.98 -0.02 0.55 16 16 N -0.63 -8.15 6.11 -101.22 -0.62 -8.77 16 17 C 0.01 0.10 2.11 -131.60 -0.28 -0.18 16 18 C 0.13 1.26 5.08 -4.04 -0.02 1.24 16 19 N -0.71 -8.30 4.95 -60.29 -0.30 -8.60 16 20 C 0.49 6.41 7.22 -10.98 -0.08 6.33 16 21 O -0.50 -7.28 16.11 5.56 0.09 -7.20 16 22 C 0.28 3.65 2.48 -27.88 -0.07 3.58 16 23 C -0.18 -1.76 8.92 37.16 0.33 -1.43 16 24 F -0.17 -2.80 17.05 2.25 0.04 -2.77 16 25 F -0.19 -2.54 16.44 2.25 0.04 -2.51 16 26 C -0.15 -1.19 10.11 -26.69 -0.27 -1.46 16 27 C -0.15 -1.15 10.18 -26.69 -0.27 -1.43 16 28 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.07 0.87 6.36 -51.93 -0.33 0.54 16 33 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 34 H 0.04 0.98 6.79 -51.92 -0.35 0.62 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.06 0.82 6.84 -51.93 -0.36 0.47 16 37 H 0.10 1.20 7.77 -51.93 -0.40 0.80 16 38 H 0.35 5.00 6.38 -39.29 -0.25 4.75 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.71 7.89 -51.93 -0.41 0.30 16 41 H 0.41 4.90 6.07 -40.82 -0.25 4.66 16 42 H 0.10 0.96 7.87 -51.93 -0.41 0.55 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.63 8.04 -51.93 -0.42 0.21 16 46 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -35.03 403.87 -7.13 -42.17 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.36 Total: 7.67 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.87 Total: 8.82 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.57 Total: -56.71 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.18 Total: -19.77 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.08 Total: -5.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.03 -7.13 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423167691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.385 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds