Wall clock time and date at job start Wed Apr 1 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.46926 * 2 1 4 4 C 1.46497 * 120.00049 * 274.28540 * 3 2 1 5 5 C 1.50704 * 109.47356 * 270.00063 * 4 3 2 6 6 H 1.08009 * 119.99658 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00379 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00015 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99689 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46899 * 90.00328 * 9 7 5 11 11 H 1.48504 * 109.46781 * 209.99868 * 9 7 5 12 12 H 1.48496 * 109.47274 * 330.00213 * 9 7 5 13 13 C 1.34779 * 120.00014 * 94.28836 * 3 2 1 14 14 O 1.21283 * 120.00168 * 184.77354 * 13 3 2 15 15 C 1.50699 * 120.00004 * 4.77874 * 13 3 2 16 16 N 1.46903 * 109.47275 * 184.79594 * 15 13 3 17 17 C 1.46896 * 110.99929 * 184.14374 * 16 15 13 18 18 C 1.52999 * 115.55222 * 64.89118 * 17 16 15 19 19 N 1.46496 * 109.47152 * 32.25357 * 18 17 16 20 20 C 1.34782 * 119.99831 * 185.49567 * 19 18 17 21 21 O 1.21282 * 119.99773 * 355.36690 * 20 19 18 22 22 C 1.50698 * 119.99856 * 175.36245 * 20 19 18 23 23 C 1.52998 * 109.46879 * 154.34268 * 22 20 19 24 24 F 1.39897 * 109.47497 * 274.34516 * 22 20 19 25 25 F 1.39898 * 109.47056 * 34.34429 * 22 20 19 26 26 C 1.53005 * 117.49637 * 210.55541 * 17 16 15 27 27 C 1.53006 * 117.49756 * 279.21541 * 17 16 15 28 28 H 1.08996 * 109.47176 * 305.01156 * 1 2 3 29 29 H 1.09002 * 109.47231 * 65.01567 * 1 2 3 30 30 H 1.09002 * 109.47265 * 185.01200 * 1 2 3 31 31 H 1.09001 * 109.47171 * 239.99956 * 2 1 3 32 32 H 1.08997 * 109.46944 * 119.99838 * 2 1 3 33 33 H 1.08992 * 109.47149 * 30.00126 * 4 3 2 34 34 H 1.09007 * 109.47239 * 150.00733 * 4 3 2 35 35 H 0.97004 * 119.99815 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46957 * 64.79717 * 15 13 3 37 37 H 1.08994 * 109.47366 * 304.79561 * 15 13 3 38 38 H 1.00900 * 110.99762 * 308.09610 * 16 15 13 39 39 H 1.09004 * 109.46779 * 272.25453 * 18 17 16 40 40 H 1.09003 * 109.46984 * 152.25680 * 18 17 16 41 41 H 0.96998 * 120.00262 * 5.76967 * 19 18 17 42 42 H 1.09005 * 109.47268 * 60.00548 * 23 22 20 43 43 H 1.08999 * 109.47073 * 179.97438 * 23 22 20 44 44 H 1.08994 * 109.47492 * 300.00427 * 23 22 20 45 45 H 1.08997 * 117.50006 * 214.99961 * 26 17 16 46 46 H 1.09004 * 117.49886 * 0.02989 * 26 17 16 47 47 H 1.08995 * 117.49611 * 359.97438 * 27 17 16 48 48 H 1.08995 * 117.49533 * 144.97604 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1730 2.1034 -1.2651 5 6 3.5619 1.8788 -1.8052 6 1 4.2595 1.2596 -1.2606 7 6 3.9419 2.4629 -2.9949 8 7 5.1537 2.2665 -3.4664 9 14 2.7352 3.5333 -3.9371 10 1 2.8694 4.9428 -3.4892 11 1 3.0265 3.4460 -5.3907 12 1 1.3505 3.0620 -3.6806 13 6 2.3252 1.9874 1.1640 14 8 2.6463 3.1570 1.1723 15 6 2.2694 1.2121 2.4550 16 7 2.5327 2.1174 3.5816 17 6 2.5837 1.3782 4.8500 18 6 3.7309 0.3748 4.9835 19 7 4.8978 0.8663 4.2465 20 6 5.9957 0.0933 4.1299 21 8 6.0503 -0.9732 4.7048 22 6 7.1554 0.5543 3.2852 23 6 8.4442 -0.0991 3.7882 24 9 6.9364 0.1884 1.9528 25 9 7.2727 1.9455 3.3734 26 6 2.1386 2.1147 6.1152 27 6 1.2520 1.0212 5.5136 28 1 -0.3633 0.5896 0.8417 29 1 -0.3634 0.4341 -0.9315 30 1 -0.3634 -1.0237 0.0898 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4401 1.7377 -1.9842 34 1 2.0167 3.1690 -1.0968 35 1 5.4211 2.6777 -4.3033 36 1 3.0224 0.4242 2.4384 37 1 1.2808 0.7677 2.5695 38 1 3.3825 2.6409 3.4338 39 1 3.4216 -0.5872 4.5746 40 1 3.9893 0.2561 6.0358 41 1 4.8817 1.7495 3.8459 42 1 8.3529 -1.1831 3.7194 43 1 9.2830 0.2340 3.1769 44 1 8.6149 0.1859 4.8263 45 1 2.6630 1.8842 7.0425 46 1 1.8075 3.1475 6.0062 47 1 0.3383 1.3352 5.0092 48 1 1.1932 0.0713 6.0448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423167691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:58 Heat of formation + Delta-G solvation = -155.415848 kcal Electronic energy + Delta-G solvation = -32532.861493 eV Core-core repulsion = 27873.045846 eV Total energy + Delta-G solvation = -4659.815647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -50.40897 -48.43140 -41.35910 -40.75453 -39.33907 -37.04400 -35.61583 -34.94627 -34.21588 -32.71546 -31.86800 -30.02326 -28.84899 -27.33493 -25.33182 -24.44676 -23.91309 -23.21728 -22.00365 -20.84200 -20.04331 -19.78907 -19.11832 -19.01494 -18.26648 -17.93155 -17.36604 -17.19190 -17.01421 -16.64633 -16.28667 -16.21332 -15.58558 -15.25010 -15.21541 -15.04568 -14.73997 -14.72996 -14.60403 -14.56796 -14.48488 -14.27084 -13.92666 -13.63041 -13.59266 -13.43989 -13.37409 -13.19805 -13.16769 -13.02216 -12.55488 -12.39787 -12.27237 -12.07589 -11.95701 -11.75654 -11.68146 -11.31396 -11.03797 -10.84380 -10.69814 -10.40702 -9.70577 -9.43120 -8.34965 -6.40402 0.78034 1.31030 1.34689 1.35178 1.43520 1.73763 2.12970 2.29518 2.49584 2.75670 2.80673 2.95261 2.99565 3.26399 3.34821 3.47041 3.60464 3.96168 4.04460 4.08282 4.24172 4.27295 4.39224 4.42373 4.48161 4.50338 4.55541 4.58101 4.60205 4.77654 4.82263 4.85352 4.89545 4.93113 4.97775 4.98992 5.10695 5.36034 5.36507 5.45137 5.60457 5.76634 5.79591 6.10142 6.22519 6.46892 6.60917 6.67861 7.19767 7.37733 8.81924 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008879 B = 0.004123 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.766361 B = 6789.772511 C = 8831.417685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.227 3.773 5 C -0.536 4.536 6 H 0.026 0.974 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.497 3.503 14 O -0.581 6.581 15 C 0.060 3.940 16 N -0.637 5.637 17 C -0.006 4.006 18 C 0.129 3.871 19 N -0.708 5.708 20 C 0.491 3.509 21 O -0.518 6.518 22 C 0.267 3.733 23 C -0.177 4.177 24 F -0.197 7.197 25 F -0.193 7.193 26 C -0.141 4.141 27 C -0.132 4.132 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.019 0.981 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.127 0.873 38 H 0.341 0.659 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.405 0.595 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -7.390 21.212 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.331 5.331 4 C 0.105 3.895 5 C -0.575 4.575 6 H 0.045 0.955 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.285 3.715 14 O -0.462 6.462 15 C -0.072 4.072 16 N -0.270 5.270 17 C -0.098 4.098 18 C 0.005 3.995 19 N -0.361 5.361 20 C 0.273 3.727 21 O -0.394 6.394 22 C 0.228 3.772 23 C -0.234 4.234 24 F -0.178 7.178 25 F -0.174 7.174 26 C -0.179 4.179 27 C -0.170 4.170 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.242 0.758 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.136 0.864 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.142 -7.317 21.486 23.514 hybrid contribution 1.143 0.817 -1.675 2.186 sum -4.999 -6.501 19.812 21.442 Atomic orbital electron populations 1.22130 0.93686 1.03695 1.02118 1.21763 0.95879 0.81220 1.03634 1.48003 1.63914 1.15101 1.06081 1.19263 0.95182 0.92698 0.82398 1.21538 0.98410 1.30986 1.06547 0.95520 1.25827 0.97113 0.97331 0.98240 1.70056 1.20450 1.45986 1.21881 0.85729 0.80458 0.79053 0.77785 1.20156 1.19958 1.16246 1.21154 0.76596 0.87465 0.86240 1.90634 1.49502 1.18606 1.87410 1.21756 1.04374 0.93845 0.87225 1.60149 1.42466 1.24576 0.99760 1.21739 0.97416 1.00457 0.90180 1.21633 0.82873 0.97211 0.97788 1.46118 1.14791 1.20149 1.55058 1.20758 0.84226 0.85433 0.82324 1.90749 1.80551 1.22182 1.45950 1.21806 0.98899 0.77470 0.79074 1.22699 0.92094 1.03602 1.05004 1.93133 1.96162 1.91388 1.37094 1.93063 1.97081 1.31276 1.96023 1.23288 1.02067 0.98429 0.94089 1.23204 0.92221 1.00717 1.00834 0.92108 0.93403 0.88604 0.91271 0.88906 0.93549 0.96324 0.92278 0.92117 0.85517 0.83843 0.90309 0.88520 0.75789 0.87807 0.87764 0.87026 0.86382 0.88470 0.87929 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.24 71.98 0.74 -2.79 16 2 C 0.10 2.88 5.94 86.38 0.51 3.40 16 3 N -0.60 -24.32 2.46 -826.17 -2.03 -26.35 16 4 C 0.23 11.21 4.29 85.63 0.37 11.57 16 5 C -0.54 -32.00 9.94 25.60 0.25 -31.75 16 6 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 7 C 0.01 0.78 5.47 84.66 0.46 1.25 16 8 N -0.94 -60.45 13.96 21.45 0.30 -60.15 16 9 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 13 C 0.50 19.87 7.70 87.66 0.68 20.54 16 14 O -0.58 -28.58 15.62 -3.04 -0.05 -28.62 16 15 C 0.06 1.63 4.41 85.56 0.38 2.01 16 16 N -0.64 -15.94 6.11 -474.14 -2.90 -18.84 16 17 C -0.01 -0.10 2.11 3.53 0.01 -0.09 16 18 C 0.13 2.29 5.08 86.38 0.44 2.73 16 19 N -0.71 -16.21 4.95 -463.06 -2.29 -18.50 16 20 C 0.49 12.73 7.22 87.66 0.63 13.36 16 21 O -0.52 -14.57 16.11 -3.04 -0.05 -14.62 16 22 C 0.27 7.13 2.48 29.85 0.07 7.21 16 23 C -0.18 -3.34 8.92 71.98 0.64 -2.70 16 24 F -0.20 -6.80 17.05 44.97 0.77 -6.03 16 25 F -0.19 -5.42 16.44 44.97 0.74 -4.68 16 26 C -0.14 -1.86 10.11 30.62 0.31 -1.55 16 27 C -0.13 -1.60 10.18 30.62 0.31 -1.29 16 28 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16 32 H 0.09 2.23 6.36 -2.39 -0.02 2.21 16 33 H 0.05 2.12 7.13 -2.39 -0.02 2.11 16 34 H 0.02 0.99 6.79 -2.38 -0.02 0.98 16 35 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 36 H 0.06 1.65 6.84 -2.39 -0.02 1.63 16 37 H 0.13 2.72 7.77 -2.39 -0.02 2.71 16 38 H 0.34 9.82 6.38 -89.69 -0.57 9.25 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.43 7.89 -2.39 -0.02 1.41 16 41 H 0.40 9.91 6.07 -92.71 -0.56 9.35 16 42 H 0.10 1.92 7.87 -2.38 -0.02 1.90 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.12 1.10 8.04 -2.39 -0.02 1.08 16 46 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.54 403.87 1.98 -78.56 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.20 Total: 30.33 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 5.80 Total: 21.90 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -6.92 Total: -123.84 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.10 Total: -43.24 kcal Atomic # 9 Polarization: -12.22 SS G_CDS: 1.51 Total: -10.71 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -80.54 1.98 -78.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423167691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.854 kcal (2) G-P(sol) polarization free energy of solvation -80.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds