Wall clock time and date at job start Wed Apr 1 2020 04:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46502 * 120.00058 * 270.00039 * 3 2 1 5 5 C 1.50703 * 109.47010 * 90.00297 * 4 3 2 6 6 H 1.07997 * 120.00226 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99822 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99895 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00080 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47214 * 90.00750 * 9 7 5 11 11 H 1.48506 * 109.47414 * 210.00513 * 9 7 5 12 12 H 1.48502 * 109.47373 * 330.00256 * 9 7 5 13 13 C 1.34779 * 120.00216 * 90.00221 * 3 2 1 14 14 O 1.21274 * 119.99999 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99541 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.46924 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99869 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.64040 * 36.69123 * 17 16 15 19 19 C 1.55161 * 110.71758 * 160.02662 * 17 16 15 20 20 C 1.54909 * 101.58242 * 153.86623 * 19 17 16 21 21 H 1.09004 * 110.36868 * 81.82271 * 20 19 17 22 22 C 1.53000 * 110.45900 * 204.10451 * 20 19 17 23 23 N 1.47429 * 104.82986 * 322.98707 * 20 19 17 24 24 C 1.34773 * 125.64935 * 204.09311 * 23 20 19 25 25 O 1.21288 * 119.99714 * 0.02562 * 24 23 20 26 26 C 1.50698 * 120.00238 * 180.02562 * 24 23 20 27 27 F 1.39897 * 109.47294 * 184.99814 * 26 24 23 28 28 F 1.39900 * 109.47147 * 304.99954 * 26 24 23 29 29 C 1.47023 * 108.70129 * 24.12878 * 23 20 19 30 30 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 34 34 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 35 35 H 1.08996 * 109.47199 * 210.00336 * 4 3 2 36 36 H 1.09003 * 109.46945 * 330.00267 * 4 3 2 37 37 H 0.97000 * 119.99642 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47193 * 300.00050 * 15 13 3 39 39 H 1.09004 * 109.47388 * 60.00115 * 15 13 3 40 40 H 1.00907 * 110.99874 * 303.95399 * 16 15 13 41 41 H 1.09007 * 111.00098 * 271.93879 * 19 17 16 42 42 H 1.09000 * 111.00508 * 35.78515 * 19 17 16 43 43 H 1.09002 * 109.47237 * 176.91695 * 22 20 19 44 44 H 1.08998 * 109.46815 * 296.91261 * 22 20 19 45 45 H 1.09000 * 109.47329 * 56.91715 * 22 20 19 46 46 H 1.09001 * 109.46855 * 65.00381 * 26 24 23 47 47 H 1.08994 * 109.88305 * 239.51863 * 29 23 20 48 48 H 1.09003 * 110.00871 * 118.43189 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0066 2.7823 -1.7037 6 1 0.1156 2.7247 -1.0961 7 6 0.9949 3.5048 -2.8779 8 7 -0.1012 4.1244 -3.2578 9 14 2.5358 3.6038 -3.9292 10 1 2.5401 2.4866 -4.9075 11 1 2.5567 4.8985 -4.6563 12 1 3.7355 3.5050 -3.0596 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9913 1.3063 2.4723 16 7 2.3103 2.2060 3.5889 17 6 2.0770 1.5457 4.8802 18 1 2.3504 0.4919 4.8278 19 6 2.8574 2.2637 6.0128 20 6 1.9981 1.9133 7.2531 21 1 2.2496 0.9181 7.6200 22 6 2.2020 2.9538 8.3562 23 7 0.6060 1.9449 6.7689 24 6 -0.4859 2.1561 7.5302 25 8 -0.3668 2.3418 8.7229 26 6 -1.8546 2.1614 6.8998 27 9 -2.8093 2.5111 7.8606 28 9 -1.8829 3.0908 5.8544 29 6 0.6060 1.7072 5.3180 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.0644 2.7984 -1.1384 36 1 2.5506 1.3451 -2.0284 37 1 -0.1094 4.6331 -4.0837 38 1 0.9433 1.0125 2.5298 39 1 2.6212 0.4185 2.5302 40 1 3.2589 2.5434 3.5218 41 1 3.8655 1.8602 6.1091 42 1 2.8836 3.3407 5.8472 43 1 1.5501 2.7226 9.1987 44 1 3.2410 2.9356 8.6852 45 1 1.9601 3.9442 7.9707 46 1 -2.0787 1.1686 6.5096 47 1 0.1570 2.5565 4.8032 48 1 0.0492 0.7985 5.0890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423335614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:34 Heat of formation + Delta-G solvation = -150.367215 kcal Electronic energy + Delta-G solvation = -31639.373355 eV Core-core repulsion = 26979.776634 eV Total energy + Delta-G solvation = -4659.596722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.43372 -47.46103 -40.68570 -39.33098 -38.14956 -35.61730 -34.98257 -32.69996 -32.58654 -30.65567 -30.15649 -28.37977 -27.99557 -26.16766 -25.77883 -22.91847 -22.72597 -22.00404 -21.24851 -20.05441 -18.61137 -18.37593 -17.86028 -17.56015 -17.05637 -16.98522 -16.61210 -15.99384 -15.82714 -15.33796 -14.84376 -14.64351 -14.40000 -14.25914 -14.08825 -13.91479 -13.86775 -13.78204 -13.38738 -13.31257 -13.01053 -12.87451 -12.68491 -12.53390 -12.47279 -12.33224 -12.27051 -11.99223 -11.69593 -11.59611 -11.42842 -11.41467 -11.16926 -10.96508 -10.72848 -10.43500 -10.13011 -10.05606 -9.50358 -9.17502 -9.11171 -8.60464 -8.59112 -7.77104 -6.08800 -4.07201 1.74996 2.08907 3.22724 3.25336 3.28963 3.34309 3.37543 3.55431 3.62201 3.96858 4.11688 4.16662 4.22809 4.37294 4.38900 4.65698 4.70867 4.89021 4.93493 4.96643 5.10659 5.22824 5.24437 5.25637 5.30884 5.34744 5.42672 5.53702 5.59395 5.67744 5.73069 5.77000 5.78775 6.03805 6.10560 6.23749 6.56408 6.73226 6.78284 6.83957 6.95748 7.16669 7.31259 7.39131 7.60432 8.20300 8.46433 8.91236 8.97020 9.51456 11.04410 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.002479 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.185511 B =11292.465043 C =12020.180450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 N -0.595 5.595 4 C 0.217 3.783 5 C -0.525 4.525 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.507 3.493 14 O -0.526 6.526 15 C 0.041 3.959 16 N -0.660 5.660 17 C 0.079 3.921 18 H 0.065 0.935 19 C -0.132 4.132 20 C 0.138 3.862 21 H 0.082 0.918 22 C -0.168 4.168 23 N -0.599 5.599 24 C 0.491 3.509 25 O -0.503 6.503 26 C 0.260 3.740 27 F -0.177 7.177 28 F -0.181 7.181 29 C 0.091 3.909 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.358 0.642 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.134 0.866 47 H 0.100 0.900 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -12.547 19.977 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.012 4.012 3 N -0.328 5.328 4 C 0.096 3.904 5 C -0.564 4.564 6 H 0.095 0.905 7 C -0.131 4.131 8 N -0.535 5.535 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.292 3.708 14 O -0.401 6.401 15 C -0.092 4.092 16 N -0.294 5.294 17 C -0.032 4.032 18 H 0.083 0.917 19 C -0.170 4.170 20 C 0.036 3.964 21 H 0.100 0.900 22 C -0.226 4.226 23 N -0.334 5.334 24 C 0.275 3.725 25 O -0.378 6.378 26 C 0.202 3.798 27 F -0.158 7.158 28 F -0.162 7.162 29 C -0.032 4.032 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.180 0.820 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.151 0.849 47 H 0.118 0.882 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.135 -11.352 20.474 23.619 hybrid contribution 1.111 -0.509 -0.913 1.526 sum 4.246 -11.861 19.561 23.267 Atomic orbital electron populations 1.22241 0.95892 1.00934 1.03911 1.21417 0.94953 0.83281 1.01581 1.47966 1.64423 1.13326 1.07056 1.19667 0.98273 0.92588 0.79858 1.21337 0.97310 1.30717 1.07026 0.90486 1.24865 0.95912 0.94855 0.97437 1.69894 1.27169 1.32983 1.23497 0.86886 0.84393 0.77854 0.80811 1.20218 1.21005 1.18919 1.20121 0.78957 0.86885 0.84796 1.90688 1.45499 1.17095 1.86860 1.21988 1.02768 0.94071 0.90330 1.60012 1.32951 1.37350 0.99128 1.22445 0.93970 0.97016 0.89773 0.91725 1.23100 0.98417 1.02953 0.92522 1.21981 0.79310 1.00089 0.95056 0.89983 1.22195 1.02611 0.98450 0.99308 1.48454 1.06218 1.69360 1.09332 1.20670 0.85706 0.78790 0.87357 1.90754 1.85131 1.47751 1.14156 1.21572 0.86688 0.93365 0.78129 1.93061 1.64386 1.93751 1.64565 1.93098 1.96780 1.68841 1.57485 1.22435 0.98579 1.02956 0.79246 0.93134 0.90119 0.92818 0.92031 0.90734 0.94219 0.95819 0.92598 0.88345 0.92735 0.82046 0.89319 0.88773 0.89559 0.91572 0.92186 0.84861 0.88220 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16 2 C 0.11 1.55 5.98 -4.04 -0.02 1.52 16 3 N -0.59 -11.23 2.46 -175.06 -0.43 -11.66 16 4 C 0.22 5.06 4.27 -5.19 -0.02 5.03 16 5 C -0.53 -14.56 9.48 -34.44 -0.33 -14.88 16 6 H 0.08 2.34 7.66 -52.49 -0.40 1.93 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.51 9.36 7.71 -10.98 -0.08 9.27 16 14 O -0.53 -12.16 15.78 5.56 0.09 -12.07 16 15 C 0.04 0.49 4.57 -4.97 -0.02 0.47 16 16 N -0.66 -7.55 5.92 -106.05 -0.63 -8.18 16 17 C 0.08 0.63 3.24 -65.88 -0.21 0.41 16 18 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16 19 C -0.13 -0.93 5.94 -24.58 -0.15 -1.08 16 20 C 0.14 1.08 3.76 -66.42 -0.25 0.83 16 21 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 22 C -0.17 -1.46 8.71 37.16 0.32 -1.14 16 23 N -0.60 -5.43 3.24 -163.05 -0.53 -5.96 16 24 C 0.49 5.24 7.46 -10.99 -0.08 5.16 16 25 O -0.50 -6.81 14.27 5.55 0.08 -6.73 16 26 C 0.26 2.36 5.17 36.00 0.19 2.55 16 27 F -0.18 -2.00 16.95 2.25 0.04 -1.96 16 28 F -0.18 -2.01 15.84 2.25 0.04 -1.97 16 29 C 0.09 0.76 5.89 -3.07 -0.02 0.75 16 30 H 0.05 0.70 7.22 -51.93 -0.37 0.32 16 31 H 0.08 1.46 7.26 -51.93 -0.38 1.08 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 34 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 35 H 0.04 1.01 6.48 -51.93 -0.34 0.67 16 36 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.10 1.10 7.17 -51.93 -0.37 0.73 16 39 H 0.05 0.51 7.34 -51.93 -0.38 0.13 16 40 H 0.36 4.17 8.20 -39.29 -0.32 3.85 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.81 8.06 -51.93 -0.42 0.39 16 43 H 0.09 0.93 5.89 -51.93 -0.31 0.62 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 1.07 7.04 -51.93 -0.37 0.71 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -35.78 391.71 -7.05 -42.83 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.32 Total: 1.01 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -0.40 Total: 8.81 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.81 Total: -52.29 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.17 Total: -18.80 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.07 Total: -3.93 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.78 -7.05 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423335614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.536 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds