Wall clock time and date at job start Wed Apr 1 2020 04:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46502 * 120.00058 * 270.00039 * 3 2 1 5 5 C 1.50703 * 109.47010 * 90.00297 * 4 3 2 6 6 H 1.07997 * 120.00226 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99822 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99895 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00080 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47214 * 90.00750 * 9 7 5 11 11 H 1.48506 * 109.47414 * 210.00513 * 9 7 5 12 12 H 1.48502 * 109.47373 * 330.00256 * 9 7 5 13 13 C 1.34779 * 120.00216 * 90.00221 * 3 2 1 14 14 O 1.21274 * 119.99999 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99541 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.46924 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99869 * 180.02562 * 16 15 13 18 18 H 1.08997 * 110.64040 * 36.69123 * 17 16 15 19 19 C 1.55161 * 110.71758 * 160.02662 * 17 16 15 20 20 C 1.54909 * 101.58242 * 153.86623 * 19 17 16 21 21 H 1.09004 * 110.36868 * 81.82271 * 20 19 17 22 22 C 1.53000 * 110.45900 * 204.10451 * 20 19 17 23 23 N 1.47429 * 104.82986 * 322.98707 * 20 19 17 24 24 C 1.34773 * 125.64935 * 204.09311 * 23 20 19 25 25 O 1.21288 * 119.99714 * 0.02562 * 24 23 20 26 26 C 1.50698 * 120.00238 * 180.02562 * 24 23 20 27 27 F 1.39897 * 109.47294 * 184.99814 * 26 24 23 28 28 F 1.39900 * 109.47147 * 304.99954 * 26 24 23 29 29 C 1.47023 * 108.70129 * 24.12878 * 23 20 19 30 30 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 34 34 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 35 35 H 1.08996 * 109.47199 * 210.00336 * 4 3 2 36 36 H 1.09003 * 109.46945 * 330.00267 * 4 3 2 37 37 H 0.97000 * 119.99642 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47193 * 300.00050 * 15 13 3 39 39 H 1.09004 * 109.47388 * 60.00115 * 15 13 3 40 40 H 1.00907 * 110.99874 * 303.95399 * 16 15 13 41 41 H 1.09007 * 111.00098 * 271.93879 * 19 17 16 42 42 H 1.09000 * 111.00508 * 35.78515 * 19 17 16 43 43 H 1.09002 * 109.47237 * 176.91695 * 22 20 19 44 44 H 1.08998 * 109.46815 * 296.91261 * 22 20 19 45 45 H 1.09000 * 109.47329 * 56.91715 * 22 20 19 46 46 H 1.09001 * 109.46855 * 65.00381 * 26 24 23 47 47 H 1.08994 * 109.88305 * 239.51863 * 29 23 20 48 48 H 1.09003 * 110.00871 * 118.43189 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0066 2.7823 -1.7037 6 1 0.1156 2.7247 -1.0961 7 6 0.9949 3.5048 -2.8779 8 7 -0.1012 4.1244 -3.2578 9 14 2.5358 3.6038 -3.9292 10 1 2.5401 2.4866 -4.9075 11 1 2.5567 4.8985 -4.6563 12 1 3.7355 3.5050 -3.0596 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9913 1.3063 2.4723 16 7 2.3103 2.2060 3.5889 17 6 2.0770 1.5457 4.8802 18 1 2.3504 0.4919 4.8278 19 6 2.8574 2.2637 6.0128 20 6 1.9981 1.9133 7.2531 21 1 2.2496 0.9181 7.6200 22 6 2.2020 2.9538 8.3562 23 7 0.6060 1.9449 6.7689 24 6 -0.4859 2.1561 7.5302 25 8 -0.3668 2.3418 8.7229 26 6 -1.8546 2.1614 6.8998 27 9 -2.8093 2.5111 7.8606 28 9 -1.8829 3.0908 5.8544 29 6 0.6060 1.7072 5.3180 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.0644 2.7984 -1.1384 36 1 2.5506 1.3451 -2.0284 37 1 -0.1094 4.6331 -4.0837 38 1 0.9433 1.0125 2.5298 39 1 2.6212 0.4185 2.5302 40 1 3.2589 2.5434 3.5218 41 1 3.8655 1.8602 6.1091 42 1 2.8836 3.3407 5.8472 43 1 1.5501 2.7226 9.1987 44 1 3.2410 2.9356 8.6852 45 1 1.9601 3.9442 7.9707 46 1 -2.0787 1.1686 6.5096 47 1 0.1570 2.5565 4.8032 48 1 0.0492 0.7985 5.0890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423335614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:33 Heat of formation + Delta-G solvation = -177.558459 kcal Electronic energy + Delta-G solvation = -31640.552456 eV Core-core repulsion = 26979.776634 eV Total energy + Delta-G solvation = -4660.775822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -50.23012 -48.27656 -41.42816 -40.68466 -38.97949 -36.99807 -35.97651 -34.73802 -33.30543 -31.91561 -31.22762 -29.75488 -28.93322 -26.98977 -26.82426 -24.14110 -24.00311 -23.21913 -21.90637 -20.79626 -19.90106 -19.14022 -19.03988 -18.63553 -18.32468 -17.95176 -17.69384 -17.23566 -16.91330 -16.48110 -15.99754 -15.56673 -15.45815 -15.33161 -15.08258 -14.88788 -14.83614 -14.61313 -14.57665 -14.47445 -14.17055 -14.04996 -13.82222 -13.63299 -13.54018 -13.34612 -13.17076 -13.04156 -12.97458 -12.96857 -12.54659 -12.31716 -12.20373 -12.08685 -11.99391 -11.81640 -11.80549 -11.58119 -10.84397 -10.77377 -10.56084 -9.88795 -9.42271 -9.32494 -8.28962 -6.32306 0.95326 1.32821 1.37968 1.39754 1.47855 1.87786 2.30246 2.34286 2.62875 2.95154 3.05072 3.19042 3.38090 3.50274 3.60858 3.68388 3.77481 4.04363 4.15923 4.17303 4.27147 4.35071 4.41126 4.46692 4.55474 4.60855 4.66758 4.70555 4.72866 4.80693 4.90369 4.94437 5.00306 5.02443 5.09469 5.12355 5.16460 5.40011 5.51400 5.58524 5.73071 5.97896 6.11537 6.30818 6.34247 6.62892 6.70148 6.82242 7.28182 7.53527 8.87862 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.002479 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.185511 B =11292.465043 C =12020.180450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.224 3.776 5 C -0.525 4.525 6 H 0.033 0.967 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.253 1.253 11 H -0.287 1.287 12 H -0.255 1.255 13 C 0.494 3.506 14 O -0.586 6.586 15 C 0.057 3.943 16 N -0.685 5.685 17 C 0.085 3.915 18 H 0.101 0.899 19 C -0.124 4.124 20 C 0.134 3.866 21 H 0.106 0.894 22 C -0.164 4.164 23 N -0.594 5.594 24 C 0.485 3.515 25 O -0.541 6.541 26 C 0.256 3.744 27 F -0.192 7.192 28 F -0.195 7.195 29 C 0.087 3.913 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.017 0.983 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.356 0.644 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.038 0.962 46 H 0.185 0.815 47 H 0.071 0.929 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -16.275 20.440 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.101 3.899 5 C -0.563 4.563 6 H 0.051 0.949 7 C -0.191 4.191 8 N -0.589 5.589 9 Si 0.769 3.231 10 H -0.177 1.177 11 H -0.213 1.213 12 H -0.179 1.179 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.074 4.074 16 N -0.319 5.319 17 C -0.025 4.025 18 H 0.118 0.882 19 C -0.162 4.162 20 C 0.032 3.968 21 H 0.123 0.877 22 C -0.222 4.222 23 N -0.328 5.328 24 C 0.269 3.731 25 O -0.419 6.419 26 C 0.200 3.800 27 F -0.174 7.174 28 F -0.176 7.176 29 C -0.036 4.036 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.177 0.823 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.057 0.943 46 H 0.202 0.798 47 H 0.089 0.911 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.131 -15.145 20.941 26.348 hybrid contribution 0.426 0.675 -0.992 1.273 sum 5.556 -14.470 19.949 25.263 Atomic orbital electron populations 1.22171 0.96382 1.02584 1.01270 1.21804 0.94471 0.80758 1.04645 1.48091 1.64478 1.15161 1.05755 1.19298 0.95049 0.92753 0.82817 1.21595 0.97651 1.30795 1.06285 0.94902 1.25857 0.99477 0.94527 0.99214 1.70063 1.29853 1.34582 1.24429 0.85742 0.79957 0.78337 0.79078 1.17707 1.21306 1.17859 1.21365 0.77227 0.86503 0.86637 1.90654 1.48029 1.19958 1.87899 1.21915 1.04446 0.94445 0.86636 1.59927 1.33072 1.38554 1.00370 1.22521 0.93435 0.98554 0.87953 0.88163 1.23064 0.99651 1.01797 0.91727 1.22173 0.78766 1.00800 0.95013 0.87655 1.22127 1.03384 0.97706 0.98955 1.48543 1.06418 1.68172 1.09643 1.20970 0.86620 0.78432 0.87065 1.90742 1.85774 1.49634 1.15726 1.22039 0.85606 0.94994 0.77399 1.93022 1.64940 1.94039 1.65350 1.93070 1.96776 1.69778 1.58023 1.22550 0.99499 1.03235 0.78306 0.93156 0.95399 0.88910 0.86698 0.89882 0.96479 0.93644 0.92548 0.86864 0.88282 0.82342 0.86562 0.90984 0.91701 0.89457 0.94288 0.79833 0.91065 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 10.24 71.98 0.74 -3.59 16 2 C 0.11 2.54 5.98 86.38 0.52 3.06 16 3 N -0.60 -21.94 2.46 -826.14 -2.03 -23.97 16 4 C 0.22 10.40 4.27 85.63 0.37 10.77 16 5 C -0.52 -30.08 9.48 25.60 0.24 -29.84 16 6 H 0.03 2.11 7.66 -2.91 -0.02 2.09 16 7 C 0.01 0.38 5.47 84.65 0.46 0.85 16 8 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 9 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 10 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 13 C 0.49 17.65 7.71 87.66 0.68 18.33 16 14 O -0.59 -27.57 15.78 -3.01 -0.05 -27.62 16 15 C 0.06 1.17 4.57 85.56 0.39 1.57 16 16 N -0.68 -13.94 5.92 -489.44 -2.90 -16.84 16 17 C 0.09 1.02 3.24 46.10 0.15 1.17 16 18 H 0.10 0.60 7.89 -2.39 -0.02 0.58 16 19 C -0.12 -1.41 5.94 31.99 0.19 -1.22 16 20 C 0.13 1.79 3.76 45.47 0.17 1.96 16 21 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 22 C -0.16 -2.77 8.71 71.98 0.63 -2.14 16 23 N -0.59 -9.68 3.24 -788.15 -2.56 -12.24 16 24 C 0.48 9.99 7.46 87.66 0.65 10.64 16 25 O -0.54 -14.83 14.27 -3.05 -0.04 -14.88 16 26 C 0.26 4.38 5.17 71.24 0.37 4.75 16 27 F -0.19 -4.33 16.95 44.97 0.76 -3.56 16 28 F -0.20 -4.29 15.84 44.97 0.71 -3.58 16 29 C 0.09 1.21 5.89 86.73 0.51 1.72 16 30 H 0.05 1.28 7.22 -2.39 -0.02 1.27 16 31 H 0.03 1.01 7.26 -2.39 -0.02 0.99 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.12 1.61 6.44 -2.39 -0.02 1.59 16 34 H 0.08 1.89 7.89 -2.39 -0.02 1.87 16 35 H 0.02 0.88 6.48 -2.39 -0.02 0.86 16 36 H 0.05 1.92 7.32 -2.39 -0.02 1.90 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.11 2.04 7.17 -2.39 -0.02 2.02 16 39 H 0.10 1.20 7.34 -2.39 -0.02 1.19 16 40 H 0.36 7.64 8.20 -89.69 -0.74 6.90 16 41 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 43 H 0.06 1.41 5.89 -2.39 -0.01 1.40 16 44 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.19 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.45 7.04 -2.39 -0.02 1.44 16 48 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -86.91 391.71 2.34 -84.57 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.20 Total: 13.83 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 6.06 Total: 18.02 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -7.18 Total: -112.70 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.09 Total: -42.50 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 1.47 Total: -7.15 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -86.91 2.34 -84.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423335614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.991 kcal (2) G-P(sol) polarization free energy of solvation -86.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds