Wall clock time and date at job start Wed Apr 1 2020 04:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46956 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.47226 * 210.00189 * 9 7 5 12 12 H 1.48501 * 109.47027 * 329.99834 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46902 * 109.47027 * 179.72353 * 15 13 3 17 17 C 1.46901 * 110.99844 * 179.97438 * 16 15 13 18 18 H 1.09004 * 110.88582 * 31.12249 * 17 16 15 19 19 C 1.55158 * 111.00188 * 154.99558 * 17 16 15 20 20 C 1.54320 * 102.93759 * 153.57669 * 19 17 16 21 21 H 1.09008 * 109.88017 * 218.23600 * 20 19 17 22 22 C 1.53003 * 109.88129 * 97.22748 * 20 19 17 23 23 N 1.47021 * 107.27536 * 337.80658 * 20 19 17 24 24 C 1.34778 * 125.64903 * 178.98704 * 23 20 19 25 25 O 1.21279 * 120.00105 * 0.02562 * 24 23 20 26 26 C 1.50700 * 119.99637 * 180.02562 * 24 23 20 27 27 F 1.39899 * 109.46921 * 184.99923 * 26 24 23 28 28 F 1.39903 * 109.47093 * 304.99662 * 26 24 23 29 29 C 1.47427 * 108.70046 * 358.94261 * 23 20 19 30 30 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 32 32 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 33 33 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 34 34 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 35 35 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 36 36 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 37 37 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 39 39 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 40 40 H 1.00902 * 110.99470 * 303.94971 * 16 15 13 41 41 H 1.08996 * 110.72159 * 271.94069 * 19 17 16 42 42 H 1.09003 * 110.71677 * 35.21719 * 19 17 16 43 43 H 1.08998 * 109.46880 * 60.00083 * 22 20 19 44 44 H 1.09003 * 109.46728 * 179.97438 * 22 20 19 45 45 H 1.08989 * 109.47267 * 299.99763 * 22 20 19 46 46 H 1.09002 * 109.47453 * 64.99768 * 26 24 23 47 47 H 1.08996 * 110.36510 * 265.28404 * 29 23 20 48 48 H 1.08999 * 110.36530 * 142.96553 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 5.9762 0.8756 -4.2605 11 1 6.3931 3.2637 -4.1993 12 1 6.7736 1.9154 -2.2200 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3209 2.2026 3.5888 17 6 2.0927 1.5405 4.8802 18 1 2.2711 0.4679 4.8038 19 6 2.9711 2.1726 5.9920 20 6 2.1616 1.8891 7.2749 21 1 2.2257 2.7426 7.9499 22 6 2.7044 0.6369 7.9666 23 7 0.7649 1.6713 6.8707 24 6 -0.2558 1.3757 7.6997 25 8 -0.0578 1.2695 8.8915 26 6 -1.6431 1.1773 7.1456 27 9 -2.5446 0.9952 8.1998 28 9 -2.0146 2.3038 6.4038 29 6 0.6657 1.8308 5.4084 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1410 -1.1385 37 1 3.6759 3.5175 -4.4431 38 1 0.9499 1.0100 2.5343 39 1 2.6281 0.4167 2.5258 40 1 3.2689 2.5407 3.5180 41 1 3.9460 1.6871 6.0360 42 1 3.0801 3.2456 5.8340 43 1 3.7511 0.7915 8.2286 44 1 2.1285 0.4433 8.8716 45 1 2.6206 -0.2156 7.2928 46 1 -1.6549 0.2980 6.5015 47 1 0.3679 2.8487 5.1572 48 1 -0.0445 1.1142 4.9960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423335616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:46 Heat of formation + Delta-G solvation = -159.005071 kcal Electronic energy + Delta-G solvation = -31381.986659 eV Core-core repulsion = 26722.015372 eV Total energy + Delta-G solvation = -4659.971287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -49.53748 -47.56265 -40.71852 -39.23266 -38.20434 -35.54172 -34.94239 -32.85185 -32.63262 -30.48514 -30.10817 -28.38611 -27.59945 -26.33319 -25.58375 -23.10945 -22.94675 -22.20117 -21.17865 -20.13214 -18.64901 -18.35506 -18.17416 -17.62599 -16.77729 -16.48439 -16.45944 -16.06239 -15.71305 -15.47971 -15.03508 -14.57445 -14.46508 -14.37605 -14.08003 -13.91754 -13.81478 -13.69863 -13.41203 -13.39208 -13.31078 -13.17237 -12.75708 -12.58379 -12.52913 -12.35628 -12.04651 -12.00471 -11.61827 -11.50774 -11.40180 -11.23568 -11.04833 -10.95207 -10.80345 -10.57335 -10.31982 -10.17267 -9.67933 -9.26306 -9.01604 -8.57087 -8.47456 -7.71084 -6.08177 -4.13201 1.70565 2.01244 3.20169 3.26128 3.32427 3.34635 3.39091 3.47438 3.65640 3.95756 4.10020 4.15428 4.20978 4.28077 4.41271 4.54867 4.77063 4.90246 4.92757 4.99733 5.09698 5.14533 5.19822 5.26375 5.33765 5.40030 5.41247 5.48336 5.57031 5.58969 5.64075 5.73039 5.74885 5.92047 5.95470 6.17094 6.41648 6.68229 6.78449 7.05180 7.18165 7.32298 7.41697 7.50294 7.88114 8.19357 8.37686 8.85978 9.05211 9.52046 10.99874 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.002255 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.634175 B =12412.823488 C =13336.357532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.528 6.528 15 C 0.040 3.960 16 N -0.660 5.660 17 C 0.076 3.924 18 H 0.066 0.934 19 C -0.133 4.133 20 C 0.138 3.862 21 H 0.084 0.916 22 C -0.165 4.165 23 N -0.599 5.599 24 C 0.489 3.511 25 O -0.504 6.504 26 C 0.261 3.739 27 F -0.176 7.176 28 F -0.183 7.183 29 C 0.100 3.900 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.361 0.639 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.135 0.865 47 H 0.096 0.904 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -9.042 19.951 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.404 6.404 15 C -0.093 4.093 16 N -0.294 5.294 17 C -0.035 4.035 18 H 0.084 0.916 19 C -0.171 4.171 20 C 0.035 3.965 21 H 0.102 0.898 22 C -0.223 4.223 23 N -0.334 5.334 24 C 0.272 3.728 25 O -0.378 6.378 26 C 0.203 3.797 27 F -0.157 7.157 28 F -0.165 7.165 29 C -0.023 4.023 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.182 0.818 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.152 0.848 47 H 0.114 0.886 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.041 -8.045 20.444 23.070 hybrid contribution 1.483 -0.811 -0.540 1.774 sum -5.558 -8.856 19.904 22.483 Atomic orbital electron populations 1.22225 0.96752 1.01368 1.02440 1.21409 0.93542 0.84294 1.02552 1.48259 1.63926 1.13170 1.07732 1.19261 0.96192 0.93696 0.78052 1.21412 0.96931 1.31906 1.06289 0.92595 1.24939 0.97822 0.94911 0.96434 1.69927 1.35711 1.33308 1.14325 0.86508 0.84684 0.77696 0.78576 1.20672 1.21066 1.19961 1.20111 0.79051 0.87098 0.84815 1.90689 1.45115 1.17674 1.86885 1.22005 1.02346 0.94346 0.90579 1.59968 1.33236 1.37190 0.99029 1.22609 0.94181 0.97173 0.89545 0.91567 1.22978 0.98470 1.03225 0.92421 1.21622 0.79271 0.98896 0.96686 0.89845 1.22183 1.01567 0.96986 1.01586 1.48490 1.08327 1.67932 1.08620 1.20660 0.86135 0.79086 0.86875 1.90801 1.83402 1.49341 1.14300 1.21551 0.85697 0.89313 0.83093 1.93064 1.68196 1.95496 1.58965 1.93086 1.92371 1.54398 1.76603 1.22623 0.98273 1.03718 0.77684 0.92224 0.93051 0.91941 0.89950 0.91993 0.95055 0.93837 0.92681 0.88733 0.92639 0.81794 0.89271 0.88819 0.91172 0.91026 0.92296 0.84781 0.88599 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.11 1.53 5.94 -4.04 -0.02 1.50 16 3 N -0.60 -11.68 2.46 -175.06 -0.43 -12.11 16 4 C 0.25 6.20 5.16 -5.20 -0.03 6.17 16 5 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 6 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 9 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 13 C 0.50 9.50 7.71 -10.98 -0.08 9.41 16 14 O -0.53 -12.43 15.78 5.55 0.09 -12.34 16 15 C 0.04 0.49 4.58 -4.97 -0.02 0.47 16 16 N -0.66 -7.50 6.04 -105.72 -0.64 -8.14 16 17 C 0.08 0.60 3.38 -65.57 -0.22 0.38 16 18 H 0.07 0.47 7.83 -51.93 -0.41 0.06 16 19 C -0.13 -0.92 5.90 -24.90 -0.15 -1.07 16 20 C 0.14 1.08 3.49 -66.95 -0.23 0.85 16 21 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 22 C -0.17 -1.20 9.05 37.16 0.34 -0.87 16 23 N -0.60 -5.11 3.08 -163.02 -0.50 -5.61 16 24 C 0.49 4.89 7.46 -10.98 -0.08 4.81 16 25 O -0.50 -6.70 15.53 5.56 0.09 -6.62 16 26 C 0.26 2.08 4.90 36.01 0.18 2.25 16 27 F -0.18 -1.81 16.95 2.25 0.04 -1.77 16 28 F -0.18 -1.69 16.46 2.25 0.04 -1.66 16 29 C 0.10 0.78 5.70 -2.53 -0.01 0.77 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.57 7.24 -51.93 -0.38 0.19 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 34 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 38 H 0.09 0.99 7.21 -51.93 -0.37 0.61 16 39 H 0.06 0.60 7.34 -51.93 -0.38 0.21 16 40 H 0.36 4.41 8.14 -39.29 -0.32 4.09 16 41 H 0.09 0.51 7.83 -51.93 -0.41 0.11 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.66 6.77 -51.93 -0.35 0.31 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.14 0.51 8.05 -51.93 -0.42 0.10 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.08 0.46 7.62 -51.93 -0.40 0.07 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -34.57 399.96 -7.46 -42.03 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.49 Total: -0.68 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -0.38 Total: 9.90 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.83 Total: -51.19 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.17 Total: -18.96 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.57 -7.46 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423335616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.978 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds