Wall clock time and date at job start Wed Apr 1 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46956 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.47226 * 210.00189 * 9 7 5 12 12 H 1.48501 * 109.47027 * 329.99834 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46902 * 109.47027 * 179.72353 * 15 13 3 17 17 C 1.46901 * 110.99844 * 179.97438 * 16 15 13 18 18 H 1.09004 * 110.88582 * 31.12249 * 17 16 15 19 19 C 1.55158 * 111.00188 * 154.99558 * 17 16 15 20 20 C 1.54320 * 102.93759 * 153.57669 * 19 17 16 21 21 H 1.09008 * 109.88017 * 218.23600 * 20 19 17 22 22 C 1.53003 * 109.88129 * 97.22748 * 20 19 17 23 23 N 1.47021 * 107.27536 * 337.80658 * 20 19 17 24 24 C 1.34778 * 125.64903 * 178.98704 * 23 20 19 25 25 O 1.21279 * 120.00105 * 0.02562 * 24 23 20 26 26 C 1.50700 * 119.99637 * 180.02562 * 24 23 20 27 27 F 1.39899 * 109.46921 * 184.99923 * 26 24 23 28 28 F 1.39903 * 109.47093 * 304.99662 * 26 24 23 29 29 C 1.47427 * 108.70046 * 358.94261 * 23 20 19 30 30 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 32 32 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 33 33 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 34 34 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 35 35 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 36 36 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 37 37 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 39 39 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 40 40 H 1.00902 * 110.99470 * 303.94971 * 16 15 13 41 41 H 1.08996 * 110.72159 * 271.94069 * 19 17 16 42 42 H 1.09003 * 110.71677 * 35.21719 * 19 17 16 43 43 H 1.08998 * 109.46880 * 60.00083 * 22 20 19 44 44 H 1.09003 * 109.46728 * 179.97438 * 22 20 19 45 45 H 1.08989 * 109.47267 * 299.99763 * 22 20 19 46 46 H 1.09002 * 109.47453 * 64.99768 * 26 24 23 47 47 H 1.08996 * 110.36510 * 265.28404 * 29 23 20 48 48 H 1.08999 * 110.36530 * 142.96553 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 5.9762 0.8756 -4.2605 11 1 6.3931 3.2637 -4.1993 12 1 6.7736 1.9154 -2.2200 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3209 2.2026 3.5888 17 6 2.0927 1.5405 4.8802 18 1 2.2711 0.4679 4.8038 19 6 2.9711 2.1726 5.9920 20 6 2.1616 1.8891 7.2749 21 1 2.2257 2.7426 7.9499 22 6 2.7044 0.6369 7.9666 23 7 0.7649 1.6713 6.8707 24 6 -0.2558 1.3757 7.6997 25 8 -0.0578 1.2695 8.8915 26 6 -1.6431 1.1773 7.1456 27 9 -2.5446 0.9952 8.1998 28 9 -2.0146 2.3038 6.4038 29 6 0.6657 1.8308 5.4084 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1410 -1.1385 37 1 3.6759 3.5175 -4.4431 38 1 0.9499 1.0100 2.5343 39 1 2.6281 0.4167 2.5258 40 1 3.2689 2.5407 3.5180 41 1 3.9460 1.6871 6.0360 42 1 3.0801 3.2456 5.8340 43 1 3.7511 0.7915 8.2286 44 1 2.1285 0.4433 8.8716 45 1 2.6206 -0.2156 7.2928 46 1 -1.6549 0.2980 6.5015 47 1 0.3679 2.8487 5.1572 48 1 -0.0445 1.1142 4.9960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423335616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:38 Heat of formation + Delta-G solvation = -183.785484 kcal Electronic energy + Delta-G solvation = -31383.061218 eV Core-core repulsion = 26722.015372 eV Total energy + Delta-G solvation = -4661.045846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -50.20955 -48.25093 -41.43071 -40.62696 -39.02645 -36.94124 -35.97177 -34.84830 -33.30203 -31.66853 -31.15448 -29.34545 -28.88297 -26.92576 -26.90337 -24.67054 -23.93637 -23.30624 -21.82780 -20.81658 -19.88019 -19.17208 -18.81962 -18.59120 -18.31783 -17.87551 -17.38001 -17.01381 -16.91372 -16.61386 -16.25915 -15.82278 -15.27918 -15.12909 -15.04314 -14.85262 -14.68915 -14.58747 -14.54237 -14.39913 -14.12765 -14.10139 -13.89496 -13.51093 -13.46125 -13.27015 -13.19004 -13.09926 -13.02759 -12.89022 -12.63787 -12.44316 -12.14807 -12.10617 -12.05115 -11.80390 -11.69167 -11.66462 -11.05955 -10.62206 -10.50064 -9.96196 -9.42786 -9.35319 -8.19911 -6.34795 0.96808 1.36012 1.37755 1.40636 1.50549 1.94028 2.27480 2.43022 2.63748 2.94932 3.09573 3.19649 3.40606 3.51427 3.60597 3.68042 3.79710 3.97334 4.15961 4.19132 4.26252 4.34296 4.42087 4.44957 4.51854 4.56397 4.60740 4.73040 4.85070 4.90547 4.94708 4.99807 5.05558 5.05692 5.11179 5.17087 5.27057 5.32935 5.45916 5.61547 5.87924 5.98991 6.09823 6.10669 6.29297 6.60867 6.74389 6.90440 7.32094 7.59184 8.86902 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.002255 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.634175 B =12412.823488 C =13336.357532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.058 3.942 16 N -0.677 5.677 17 C 0.082 3.918 18 H 0.091 0.909 19 C -0.125 4.125 20 C 0.133 3.867 21 H 0.071 0.929 22 C -0.157 4.157 23 N -0.593 5.593 24 C 0.484 3.516 25 O -0.546 6.546 26 C 0.261 3.739 27 F -0.192 7.192 28 F -0.191 7.191 29 C 0.098 3.902 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.018 0.982 36 H -0.006 1.006 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.354 0.646 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.187 0.813 47 H 0.078 0.922 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 -11.944 20.656 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.074 4.074 16 N -0.310 5.310 17 C -0.028 4.028 18 H 0.109 0.891 19 C -0.163 4.163 20 C 0.031 3.969 21 H 0.089 0.911 22 C -0.215 4.215 23 N -0.326 5.326 24 C 0.268 3.732 25 O -0.424 6.424 26 C 0.204 3.796 27 F -0.173 7.173 28 F -0.173 7.173 29 C -0.024 4.024 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.036 0.964 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.104 0.896 40 H 0.174 0.826 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.203 0.797 47 H 0.097 0.903 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.615 -10.997 21.153 24.742 hybrid contribution 1.321 0.143 -0.745 1.523 sum -5.294 -10.853 20.408 23.713 Atomic orbital electron populations 1.22164 0.94670 1.03439 1.01731 1.21751 0.95233 0.81307 1.03956 1.48282 1.64168 1.15100 1.06184 1.18647 0.95108 0.91467 0.80686 1.21716 0.97906 1.31686 1.06388 0.92671 1.25875 1.02309 0.94569 0.96594 1.70058 1.37826 1.34329 1.14826 0.85425 0.79138 0.78038 0.78258 1.18945 1.20970 1.19511 1.21343 0.77330 0.86678 0.86560 1.90657 1.47647 1.20557 1.87914 1.21925 1.04651 0.94096 0.86727 1.59917 1.33007 1.38004 1.00108 1.22640 0.94195 0.98157 0.87839 0.89121 1.22930 0.99047 1.02851 0.91472 1.21696 0.79281 0.98906 0.97045 0.91110 1.22108 1.01933 0.96851 1.00627 1.48542 1.08379 1.66761 1.08955 1.21091 0.87149 0.78473 0.86460 1.90784 1.84194 1.51368 1.16032 1.21950 0.83889 0.90612 0.83131 1.93030 1.68653 1.95573 1.60063 1.93072 1.92307 1.55282 1.76599 1.22692 0.99013 1.03666 0.77073 0.88664 0.91656 0.94808 0.91417 0.87678 0.96394 0.98801 0.92520 0.85759 0.89649 0.82564 0.87506 0.89819 0.89760 0.93333 0.91262 0.79653 0.90326 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 71.98 0.74 -2.65 16 2 C 0.10 2.61 5.94 86.38 0.51 3.13 16 3 N -0.61 -23.47 2.46 -826.15 -2.03 -25.50 16 4 C 0.26 13.74 5.16 85.63 0.44 14.18 16 5 C -0.54 -30.10 9.39 25.60 0.24 -29.86 16 6 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 9 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.49 18.21 7.71 87.66 0.68 18.89 16 14 O -0.59 -28.51 15.78 -3.04 -0.05 -28.56 16 15 C 0.06 1.22 4.58 85.56 0.39 1.61 16 16 N -0.68 -13.67 6.04 -488.40 -2.95 -16.62 16 17 C 0.08 1.01 3.38 46.31 0.16 1.17 16 18 H 0.09 0.77 7.83 -2.38 -0.02 0.75 16 19 C -0.12 -1.45 5.90 31.78 0.19 -1.27 16 20 C 0.13 1.88 3.49 45.34 0.16 2.04 16 21 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 22 C -0.16 -1.98 9.05 71.98 0.65 -1.33 16 23 N -0.59 -8.93 3.08 -788.06 -2.43 -11.36 16 24 C 0.48 9.00 7.46 87.66 0.65 9.66 16 25 O -0.55 -14.47 15.53 -3.03 -0.05 -14.52 16 26 C 0.26 3.55 4.90 71.24 0.35 3.90 16 27 F -0.19 -3.72 16.95 44.97 0.76 -2.96 16 28 F -0.19 -3.17 16.46 44.97 0.74 -2.43 16 29 C 0.10 1.24 5.70 86.85 0.49 1.73 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.19 7.24 -2.39 -0.02 1.17 16 32 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.11 1.86 6.43 -2.39 -0.02 1.85 16 35 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 36 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 37 H 0.27 14.99 8.31 -92.72 -0.77 14.22 16 38 H 0.12 1.92 7.21 -2.38 -0.02 1.90 16 39 H 0.09 1.35 7.34 -2.39 -0.02 1.33 16 40 H 0.35 8.13 8.14 -89.69 -0.73 7.40 16 41 H 0.11 0.89 7.83 -2.39 -0.02 0.88 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.86 6.77 -2.39 -0.02 0.85 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.19 0.61 8.05 -2.39 -0.02 0.59 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.10 0.75 7.62 -2.39 -0.02 0.73 16 Total: -1.00 -81.71 399.96 2.68 -79.04 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.25 Total: 10.59 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.11 Total: 21.95 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -7.12 Total: -109.02 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.09 Total: -43.08 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.50 Total: -5.39 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -81.71 2.68 -79.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423335616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.749 kcal (2) G-P(sol) polarization free energy of solvation -81.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds