Wall clock time and date at job start Wed Apr 1 2020 04:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47159 * 2 1 4 4 C 1.46492 * 120.00233 * 85.24498 * 3 2 1 5 5 C 1.50706 * 109.47117 * 90.00117 * 4 3 2 6 6 H 1.07998 * 119.99933 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00228 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99681 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00265 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46944 * 90.00486 * 9 7 5 11 11 H 1.48501 * 109.47348 * 210.00541 * 9 7 5 12 12 H 1.48498 * 109.47110 * 330.00776 * 9 7 5 13 13 C 1.34782 * 119.99664 * 264.97170 * 3 2 1 14 14 O 1.21280 * 119.99679 * 184.68890 * 13 3 2 15 15 C 1.50698 * 120.00206 * 4.69338 * 13 3 2 16 16 N 1.46900 * 109.47107 * 174.89217 * 15 13 3 17 17 C 1.46904 * 110.99892 * 185.31467 * 16 15 13 18 18 C 1.52999 * 112.85005 * 293.87651 * 17 16 15 19 19 N 1.46498 * 109.46735 * 309.28315 * 18 17 16 20 20 C 1.34780 * 119.99547 * 184.51008 * 19 18 17 21 21 O 1.21282 * 120.00291 * 4.94677 * 20 19 18 22 22 C 1.50703 * 120.00089 * 184.94918 * 20 19 18 23 23 F 1.39901 * 109.46962 * 186.39072 * 22 20 19 24 24 F 1.39904 * 109.46791 * 306.38724 * 22 20 19 25 25 C 1.53784 * 113.61390 * 162.57044 * 17 16 15 26 26 C 1.53786 * 87.08009 * 220.02055 * 25 17 16 27 27 C 1.53780 * 113.61371 * 65.07293 * 17 16 15 28 28 H 1.09006 * 109.47418 * 64.95490 * 1 2 3 29 29 H 1.09003 * 109.47496 * 184.95554 * 1 2 3 30 30 H 1.09001 * 109.47488 * 304.95437 * 1 2 3 31 31 H 1.09003 * 109.47361 * 240.00139 * 2 1 3 32 32 H 1.09001 * 109.47384 * 119.99935 * 2 1 3 33 33 H 1.09006 * 109.47245 * 210.00184 * 4 3 2 34 34 H 1.09003 * 109.47403 * 330.00392 * 4 3 2 35 35 H 0.97005 * 119.99783 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46823 * 294.88352 * 15 13 3 37 37 H 1.08995 * 109.47621 * 54.88614 * 15 13 3 38 38 H 1.00901 * 111.00359 * 61.35621 * 16 15 13 39 39 H 1.09000 * 109.47039 * 69.28189 * 18 17 16 40 40 H 1.08993 * 109.47197 * 189.27918 * 18 17 16 41 41 H 0.96993 * 120.00555 * 4.51022 * 19 18 17 42 42 H 1.08997 * 109.47351 * 66.38259 * 22 20 19 43 43 H 1.08998 * 113.61254 * 334.56400 * 25 17 16 44 44 H 1.08997 * 113.61550 * 105.46875 * 25 17 16 45 45 H 1.09004 * 113.61031 * 270.88451 * 26 25 17 46 46 H 1.08997 * 113.61060 * 139.97914 * 26 25 17 47 47 H 1.09002 * 113.61626 * 254.53340 * 27 17 16 48 48 H 1.09003 * 113.61315 * 25.43102 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1633 2.1069 1.2643 5 6 3.5481 1.8837 1.8156 6 1 4.2500 1.2637 1.2777 7 6 3.9192 2.4719 3.0061 8 7 3.0645 3.2274 3.6608 9 14 5.6353 2.1948 3.6898 10 1 6.5496 3.2446 3.1728 11 1 5.5940 2.2608 5.1727 12 1 6.1266 0.8587 3.2672 13 6 2.3394 1.9824 -1.1628 14 8 2.8234 3.0944 -1.1570 15 6 2.0968 1.2729 -2.4700 16 7 2.4128 2.1771 -3.5838 17 6 2.0690 1.5637 -4.8736 18 6 2.9308 0.3420 -5.1990 19 7 4.3457 0.6857 -5.0376 20 6 5.2981 -0.2121 -5.3591 21 8 4.9884 -1.2697 -5.8656 22 6 6.7480 0.0981 -5.0892 23 9 7.5499 -0.9097 -5.6356 24 9 7.0788 1.3255 -5.6735 25 6 1.9678 2.5738 -6.0288 26 6 0.7467 1.7758 -6.5154 27 6 0.5617 1.3210 -5.0581 28 1 -0.3634 0.4351 -0.9311 29 1 -0.3634 -1.0238 0.0888 30 1 -0.3634 0.5888 0.8423 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0082 3.1720 1.0918 34 1 1.4249 1.7432 1.9788 35 1 3.3255 3.6409 4.4986 36 1 2.7330 0.3897 -2.5275 37 1 1.0510 0.9721 -2.5316 38 1 3.3831 2.4529 -3.5617 39 1 2.6754 -0.4734 -4.5222 40 1 2.7473 0.0315 -6.2275 41 1 4.5971 1.5593 -4.6994 42 1 6.9140 0.1514 -4.0133 43 1 1.7267 3.5859 -5.7038 44 1 2.8141 2.5388 -6.7148 45 1 0.9993 0.9639 -7.1975 46 1 -0.0657 2.4022 -6.8838 47 1 0.2727 0.2745 -4.9605 48 1 -0.0638 1.9906 -4.4678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424140200.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:21 Heat of formation + Delta-G solvation = -144.012793 kcal Electronic energy + Delta-G solvation = -31916.716765 eV Core-core repulsion = 27257.395592 eV Total energy + Delta-G solvation = -4659.321173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -49.51164 -47.53582 -40.77114 -39.45142 -38.82673 -35.39834 -35.06236 -33.81460 -32.75845 -30.12580 -29.63933 -28.15332 -26.78126 -26.31585 -25.40224 -23.20012 -23.02605 -22.14048 -21.40417 -19.43395 -18.57482 -18.37682 -18.14063 -17.82020 -17.04192 -16.50112 -16.29222 -16.03190 -15.71748 -15.62249 -15.23642 -14.89551 -14.74499 -14.50555 -14.32902 -13.87907 -13.78219 -13.68699 -13.48739 -13.37851 -13.23383 -13.06454 -12.54073 -12.49193 -12.45270 -12.05904 -11.93766 -11.81158 -11.54087 -11.23201 -11.15628 -10.93849 -10.91766 -10.76252 -10.60872 -10.54074 -10.36505 -10.16526 -9.70804 -9.67371 -9.05638 -8.53301 -8.46584 -7.69733 -6.07501 -4.12279 1.71666 2.11897 3.27844 3.32713 3.34582 3.36861 3.42183 3.58760 3.70982 4.11302 4.17054 4.18706 4.25264 4.30107 4.39856 4.44591 4.53789 4.93841 5.03790 5.09678 5.14573 5.26191 5.27282 5.34941 5.44206 5.48574 5.57719 5.60592 5.61415 5.68219 5.73339 5.76131 5.93952 5.98282 6.09653 6.19445 6.44328 6.66742 6.73560 7.06298 7.16103 7.38016 7.41070 7.51274 7.88576 8.20129 8.38908 8.86744 9.06335 9.52857 11.00537 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.003412 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.264203 B = 8203.521855 C =10276.648372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.038 3.962 16 N -0.645 5.645 17 C 0.067 3.933 18 C 0.106 3.894 19 N -0.711 5.711 20 C 0.476 3.524 21 O -0.502 6.502 22 C 0.257 3.743 23 F -0.175 7.175 24 F -0.187 7.187 25 C -0.119 4.119 26 C -0.143 4.143 27 C -0.116 4.116 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.345 0.655 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.407 0.593 42 H 0.142 0.858 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -6.925 -19.162 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.094 4.094 16 N -0.277 5.277 17 C -0.026 4.026 18 C -0.019 4.019 19 N -0.365 5.365 20 C 0.257 3.743 21 O -0.375 6.375 22 C 0.200 3.800 23 F -0.157 7.157 24 F -0.168 7.168 25 C -0.157 4.157 26 C -0.181 4.181 27 C -0.155 4.155 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.165 0.835 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.243 0.757 42 H 0.159 0.841 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.266 -6.632 -19.275 20.644 hybrid contribution 1.898 -0.489 0.634 2.060 sum -1.368 -7.120 -18.641 20.001 Atomic orbital electron populations 1.22205 0.96693 1.01542 1.02270 1.21403 0.93706 0.84264 1.02394 1.48250 1.63504 1.13261 1.08086 1.19238 0.96705 0.92895 0.78219 1.21403 0.98495 1.30561 1.05932 0.92644 1.24929 0.97449 0.94948 0.96735 1.69933 1.34929 1.32133 1.16330 0.86521 0.84488 0.78524 0.77992 1.20556 1.21136 1.20017 1.20146 0.79389 0.86759 0.84779 1.90682 1.42997 1.19751 1.86897 1.21921 1.02608 0.94304 0.90611 1.60499 1.27756 1.39901 0.99577 1.22721 0.96213 0.93108 0.90529 1.21895 0.78717 0.98084 1.03175 1.45855 1.06624 1.17862 1.66202 1.21048 0.87906 0.85437 0.79890 1.90822 1.82096 1.24146 1.40477 1.21699 0.87473 0.72909 0.97969 1.93066 1.73981 1.60341 1.88265 1.93069 1.93448 1.43460 1.86852 1.23003 0.98333 0.99066 0.95326 1.22784 0.98745 1.00170 0.96362 1.22962 0.93645 1.01978 0.96866 0.93116 0.92229 0.91847 0.92006 0.90121 0.94018 0.95050 0.92711 0.93006 0.88451 0.83495 0.90580 0.89766 0.75654 0.84100 0.88385 0.91490 0.90188 0.90756 0.91255 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.60 5.92 -4.05 -0.02 1.57 16 3 N -0.60 -11.84 2.46 -175.06 -0.43 -12.27 16 4 C 0.25 6.27 5.14 -5.20 -0.03 6.24 16 5 C -0.53 -14.45 9.38 -34.44 -0.32 -14.77 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.50 9.62 7.71 -10.98 -0.08 9.53 16 14 O -0.53 -12.43 15.90 5.56 0.09 -12.34 16 15 C 0.04 0.49 4.23 -4.98 -0.02 0.47 16 16 N -0.65 -7.52 5.88 -100.39 -0.59 -8.11 16 17 C 0.07 0.57 0.81 -130.79 -0.11 0.47 16 18 C 0.11 0.92 4.59 -4.04 -0.02 0.90 16 19 N -0.71 -6.20 5.42 -60.30 -0.33 -6.53 16 20 C 0.48 4.98 7.63 -10.98 -0.08 4.90 16 21 O -0.50 -7.05 16.61 5.56 0.09 -6.95 16 22 C 0.26 2.26 5.72 36.01 0.21 2.47 16 23 F -0.18 -1.97 16.95 2.25 0.04 -1.94 16 24 F -0.19 -1.76 17.32 2.25 0.04 -1.72 16 25 C -0.12 -0.94 7.46 -25.91 -0.19 -1.13 16 26 C -0.14 -0.97 7.73 -25.92 -0.20 -1.17 16 27 C -0.12 -0.90 6.42 -25.92 -0.17 -1.07 16 28 H 0.05 0.59 7.40 -51.93 -0.38 0.20 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.75 6.42 -51.93 -0.33 0.42 16 32 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 33 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 0.61 6.63 -51.93 -0.34 0.27 16 37 H 0.10 1.12 6.47 -51.93 -0.34 0.79 16 38 H 0.34 4.11 6.93 -39.29 -0.27 3.84 16 39 H 0.08 0.69 7.45 -51.93 -0.39 0.31 16 40 H 0.08 0.73 7.30 -51.93 -0.38 0.35 16 41 H 0.41 3.12 6.94 -40.82 -0.28 2.84 16 42 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 45 H 0.08 0.50 7.64 -51.93 -0.40 0.10 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -34.44 401.17 -7.36 -41.80 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.27 Total: 2.75 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.76 Total: 8.27 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.61 Total: -52.31 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.18 Total: -19.29 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.08 Total: -3.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.44 -7.36 -41.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424140200.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.215 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds