Wall clock time and date at job start Wed Apr 1 2020 04:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47159 * 2 1 4 4 C 1.46492 * 120.00233 * 85.24498 * 3 2 1 5 5 C 1.50706 * 109.47117 * 90.00117 * 4 3 2 6 6 H 1.07998 * 119.99933 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00228 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99681 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00265 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46944 * 90.00486 * 9 7 5 11 11 H 1.48501 * 109.47348 * 210.00541 * 9 7 5 12 12 H 1.48498 * 109.47110 * 330.00776 * 9 7 5 13 13 C 1.34782 * 119.99664 * 264.97170 * 3 2 1 14 14 O 1.21280 * 119.99679 * 184.68890 * 13 3 2 15 15 C 1.50698 * 120.00206 * 4.69338 * 13 3 2 16 16 N 1.46900 * 109.47107 * 174.89217 * 15 13 3 17 17 C 1.46904 * 110.99892 * 185.31467 * 16 15 13 18 18 C 1.52999 * 112.85005 * 293.87651 * 17 16 15 19 19 N 1.46498 * 109.46735 * 309.28315 * 18 17 16 20 20 C 1.34780 * 119.99547 * 184.51008 * 19 18 17 21 21 O 1.21282 * 120.00291 * 4.94677 * 20 19 18 22 22 C 1.50703 * 120.00089 * 184.94918 * 20 19 18 23 23 F 1.39901 * 109.46962 * 186.39072 * 22 20 19 24 24 F 1.39904 * 109.46791 * 306.38724 * 22 20 19 25 25 C 1.53784 * 113.61390 * 162.57044 * 17 16 15 26 26 C 1.53786 * 87.08009 * 220.02055 * 25 17 16 27 27 C 1.53780 * 113.61371 * 65.07293 * 17 16 15 28 28 H 1.09006 * 109.47418 * 64.95490 * 1 2 3 29 29 H 1.09003 * 109.47496 * 184.95554 * 1 2 3 30 30 H 1.09001 * 109.47488 * 304.95437 * 1 2 3 31 31 H 1.09003 * 109.47361 * 240.00139 * 2 1 3 32 32 H 1.09001 * 109.47384 * 119.99935 * 2 1 3 33 33 H 1.09006 * 109.47245 * 210.00184 * 4 3 2 34 34 H 1.09003 * 109.47403 * 330.00392 * 4 3 2 35 35 H 0.97005 * 119.99783 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46823 * 294.88352 * 15 13 3 37 37 H 1.08995 * 109.47621 * 54.88614 * 15 13 3 38 38 H 1.00901 * 111.00359 * 61.35621 * 16 15 13 39 39 H 1.09000 * 109.47039 * 69.28189 * 18 17 16 40 40 H 1.08993 * 109.47197 * 189.27918 * 18 17 16 41 41 H 0.96993 * 120.00555 * 4.51022 * 19 18 17 42 42 H 1.08997 * 109.47351 * 66.38259 * 22 20 19 43 43 H 1.08998 * 113.61254 * 334.56400 * 25 17 16 44 44 H 1.08997 * 113.61550 * 105.46875 * 25 17 16 45 45 H 1.09004 * 113.61031 * 270.88451 * 26 25 17 46 46 H 1.08997 * 113.61060 * 139.97914 * 26 25 17 47 47 H 1.09002 * 113.61626 * 254.53340 * 27 17 16 48 48 H 1.09003 * 113.61315 * 25.43102 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1633 2.1069 1.2643 5 6 3.5481 1.8837 1.8156 6 1 4.2500 1.2637 1.2777 7 6 3.9192 2.4719 3.0061 8 7 3.0645 3.2274 3.6608 9 14 5.6353 2.1948 3.6898 10 1 6.5496 3.2446 3.1728 11 1 5.5940 2.2608 5.1727 12 1 6.1266 0.8587 3.2672 13 6 2.3394 1.9824 -1.1628 14 8 2.8234 3.0944 -1.1570 15 6 2.0968 1.2729 -2.4700 16 7 2.4128 2.1771 -3.5838 17 6 2.0690 1.5637 -4.8736 18 6 2.9308 0.3420 -5.1990 19 7 4.3457 0.6857 -5.0376 20 6 5.2981 -0.2121 -5.3591 21 8 4.9884 -1.2697 -5.8656 22 6 6.7480 0.0981 -5.0892 23 9 7.5499 -0.9097 -5.6356 24 9 7.0788 1.3255 -5.6735 25 6 1.9678 2.5738 -6.0288 26 6 0.7467 1.7758 -6.5154 27 6 0.5617 1.3210 -5.0581 28 1 -0.3634 0.4351 -0.9311 29 1 -0.3634 -1.0238 0.0888 30 1 -0.3634 0.5888 0.8423 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0082 3.1720 1.0918 34 1 1.4249 1.7432 1.9788 35 1 3.3255 3.6409 4.4986 36 1 2.7330 0.3897 -2.5275 37 1 1.0510 0.9721 -2.5316 38 1 3.3831 2.4529 -3.5617 39 1 2.6754 -0.4734 -4.5222 40 1 2.7473 0.0315 -6.2275 41 1 4.5971 1.5593 -4.6994 42 1 6.9140 0.1514 -4.0133 43 1 1.7267 3.5859 -5.7038 44 1 2.8141 2.5388 -6.7148 45 1 0.9993 0.9639 -7.1975 46 1 -0.0657 2.4022 -6.8838 47 1 0.2727 0.2745 -4.9605 48 1 -0.0638 1.9906 -4.4678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424140200.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:16 Heat of formation + Delta-G solvation = -169.174671 kcal Electronic energy + Delta-G solvation = -31917.807866 eV Core-core repulsion = 27257.395592 eV Total energy + Delta-G solvation = -4660.412274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -50.25710 -48.29549 -41.57235 -40.60088 -39.94466 -36.93527 -35.85871 -35.04822 -34.56561 -31.57429 -30.42720 -29.62085 -27.86117 -27.19280 -26.36550 -24.76152 -24.04235 -23.32167 -22.18843 -20.17547 -19.92035 -19.18862 -18.85333 -18.66334 -18.55775 -18.04388 -17.31262 -17.18370 -16.94155 -16.56074 -16.35695 -16.17380 -15.77322 -15.42600 -15.14481 -15.07231 -14.78580 -14.64332 -14.62598 -14.42333 -14.21082 -14.12355 -13.98238 -13.52190 -13.27029 -13.25601 -13.15720 -13.12517 -12.88183 -12.64624 -12.52408 -12.44316 -12.13199 -11.87892 -11.82510 -11.68679 -11.55384 -11.24554 -11.09904 -10.63371 -10.55111 -10.46324 -9.51154 -9.38078 -8.20389 -6.35000 0.91671 1.37587 1.39280 1.40008 1.49432 1.89072 2.24597 2.42906 2.76067 2.97186 3.09251 3.21056 3.44381 3.50022 3.54101 3.65265 3.69858 3.81991 3.94800 4.09212 4.27051 4.33386 4.42579 4.44499 4.49164 4.58458 4.66233 4.88787 4.92054 4.95238 4.97644 5.01653 5.07972 5.09671 5.14866 5.23890 5.30941 5.41278 5.48454 5.60269 5.85010 5.93360 5.95665 6.08939 6.27377 6.62420 6.73113 6.86483 7.31305 7.55374 8.86453 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.003412 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.264203 B = 8203.521855 C =10276.648372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.280 1.280 11 H -0.278 1.278 12 H -0.261 1.261 13 C 0.495 3.505 14 O -0.582 6.582 15 C 0.058 3.942 16 N -0.659 5.659 17 C 0.071 3.929 18 C 0.109 3.891 19 N -0.702 5.702 20 C 0.476 3.524 21 O -0.541 6.541 22 C 0.257 3.743 23 F -0.191 7.191 24 F -0.190 7.190 25 C -0.120 4.120 26 C -0.134 4.134 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.100 0.900 32 H 0.068 0.932 33 H -0.006 1.006 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.341 0.659 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.413 0.587 42 H 0.179 0.821 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 -8.750 -20.411 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.206 1.206 11 H -0.203 1.203 12 H -0.185 1.185 13 C 0.283 3.717 14 O -0.462 6.462 15 C -0.074 4.074 16 N -0.291 5.291 17 C -0.020 4.020 18 C -0.016 4.016 19 N -0.355 5.355 20 C 0.259 3.741 21 O -0.418 6.418 22 C 0.200 3.800 23 F -0.172 7.172 24 F -0.172 7.172 25 C -0.158 4.158 26 C -0.172 4.172 27 C -0.154 4.154 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.012 0.988 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.251 0.749 42 H 0.196 0.804 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.126 -8.479 -20.544 22.444 hybrid contribution 1.783 0.135 0.995 2.046 sum -1.343 -8.344 -19.549 21.297 Atomic orbital electron populations 1.22140 0.94675 1.03248 1.01867 1.21713 0.95363 0.81475 1.03626 1.48259 1.63783 1.14972 1.06640 1.18638 0.95570 0.90870 0.80580 1.21699 0.99355 1.30436 1.06175 0.92794 1.25843 1.01610 0.94560 0.97139 1.70059 1.37048 1.33055 1.16799 0.85449 0.79241 0.78849 0.77472 1.20584 1.20308 1.18536 1.21247 0.77784 0.86330 0.86340 1.90649 1.45333 1.22353 1.87842 1.21755 1.04286 0.93998 0.87346 1.60487 1.27749 1.40385 1.00441 1.22777 0.96917 0.93262 0.89062 1.21912 0.78377 0.97873 1.03471 1.45848 1.06661 1.17774 1.65222 1.21308 0.88706 0.84942 0.79166 1.90804 1.82797 1.25768 1.42449 1.21986 0.86178 0.72184 0.99602 1.93033 1.74342 1.61121 1.88686 1.93063 1.93369 1.43598 1.87136 1.22985 0.99196 0.98456 0.95121 1.22765 0.98169 1.00205 0.96011 1.22969 0.92440 1.02724 0.97271 0.91678 0.88954 0.94558 0.88229 0.91392 0.98784 0.96322 0.92517 0.90837 0.86247 0.83856 0.90349 0.89417 0.74938 0.80408 0.89579 0.91091 0.89098 0.90189 0.89716 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.24 71.98 0.74 -2.98 16 2 C 0.10 2.84 5.92 86.38 0.51 3.35 16 3 N -0.60 -24.03 2.46 -826.15 -2.03 -26.06 16 4 C 0.27 13.94 5.14 85.64 0.44 14.38 16 5 C -0.54 -30.24 9.38 25.60 0.24 -30.00 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 9 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 C 0.49 18.80 7.71 87.66 0.68 19.48 16 14 O -0.58 -28.26 15.90 -3.03 -0.05 -28.31 16 15 C 0.06 1.37 4.23 85.56 0.36 1.73 16 16 N -0.66 -14.32 5.88 -471.54 -2.77 -17.09 16 17 C 0.07 1.06 0.81 4.05 0.00 1.07 16 18 C 0.11 1.59 4.59 86.38 0.40 1.99 16 19 N -0.70 -10.79 5.42 -463.06 -2.51 -13.30 16 20 C 0.48 9.17 7.63 87.66 0.67 9.84 16 21 O -0.54 -14.54 16.61 -3.03 -0.05 -14.59 16 22 C 0.26 4.08 5.72 71.24 0.41 4.49 16 23 F -0.19 -4.08 16.95 44.97 0.76 -3.32 16 24 F -0.19 -3.29 17.32 44.97 0.78 -2.51 16 25 C -0.12 -1.67 7.46 31.12 0.23 -1.44 16 26 C -0.13 -1.47 7.73 31.12 0.24 -1.23 16 27 C -0.12 -1.48 6.42 31.12 0.20 -1.28 16 28 H 0.06 1.31 7.40 -2.38 -0.02 1.30 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 2.06 6.42 -2.39 -0.02 2.05 16 32 H 0.07 2.09 8.11 -2.39 -0.02 2.07 16 33 H -0.01 -0.37 7.50 -2.38 -0.02 -0.38 16 34 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 35 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 36 H 0.07 1.46 6.63 -2.39 -0.02 1.44 16 37 H 0.12 2.33 6.47 -2.39 -0.02 2.32 16 38 H 0.34 7.78 6.93 -89.69 -0.62 7.16 16 39 H 0.08 1.16 7.45 -2.39 -0.02 1.14 16 40 H 0.09 1.29 7.30 -2.39 -0.02 1.27 16 41 H 0.41 5.57 6.94 -92.71 -0.64 4.92 16 42 H 0.18 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 45 H 0.09 0.84 7.64 -2.39 -0.02 0.83 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 48 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -78.56 401.17 1.75 -76.81 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.27 Total: 17.51 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 5.58 Total: 20.27 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -7.03 Total: -111.93 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.10 Total: -42.90 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.54 Total: -5.83 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -78.56 1.75 -76.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424140200.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.366 kcal (2) G-P(sol) polarization free energy of solvation -78.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds