Wall clock time and date at job start Wed Apr 1 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00062 * 2 1 4 4 O 1.21283 * 120.00443 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99985 * 180.02562 * 3 2 1 6 6 N 1.46896 * 109.47287 * 180.02562 * 5 3 2 7 7 C 1.46896 * 111.00011 * 169.99801 * 6 5 3 8 8 C 1.53242 * 109.34005 * 187.24948 * 7 6 5 9 9 N 1.47081 * 108.52238 * 306.17361 * 8 7 6 10 10 C 1.34776 * 120.87907 * 231.18597 * 9 8 7 11 11 O 1.21577 * 120.00127 * 4.88859 * 10 9 8 12 12 N 1.34782 * 119.99810 * 184.61280 * 10 9 8 13 13 C 1.39459 * 119.99731 * 175.27660 * 12 10 9 14 14 C 1.38645 * 119.64497 * 185.20313 * 13 12 10 15 15 C 1.40816 * 118.67207 * 180.02562 * 14 13 12 16 16 C 1.41543 * 120.99760 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99968 * 320.48972 * 16 15 14 18 18 C 1.40032 * 120.00093 * 140.49071 * 16 15 14 19 19 N 1.30742 * 119.99981 * 176.57799 * 18 16 15 20 20 Si 1.86798 * 120.00404 * 356.57535 * 18 16 15 21 21 H 1.48504 * 109.47021 * 89.99902 * 20 18 16 22 22 H 1.48495 * 109.47234 * 210.00433 * 20 18 16 23 23 H 1.48500 * 109.46680 * 330.00664 * 20 18 16 24 24 C 1.41166 * 118.00910 * 359.97438 * 15 14 13 25 25 C 1.36592 * 119.12260 * 0.02562 * 24 15 14 26 26 N 1.32062 * 121.26153 * 359.72335 * 25 24 15 27 27 C 1.47078 * 118.23645 * 51.45273 * 9 8 7 28 28 C 1.46900 * 110.99857 * 294.29871 * 6 5 3 29 29 H 1.08994 * 109.47301 * 59.99098 * 1 2 3 30 30 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46521 * 299.99654 * 1 2 3 32 32 H 0.96997 * 119.99690 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47015 * 60.00172 * 5 3 2 34 34 H 1.09004 * 109.46729 * 300.00527 * 5 3 2 35 35 H 1.09008 * 109.48987 * 67.29373 * 7 6 5 36 36 H 1.08998 * 109.49768 * 307.21061 * 7 6 5 37 37 H 1.08995 * 109.62987 * 186.46345 * 8 7 6 38 38 H 1.09001 * 109.62492 * 65.88430 * 8 7 6 39 39 H 0.96999 * 119.99962 * 355.27499 * 12 10 9 40 40 H 1.07997 * 120.66238 * 359.97438 * 14 13 12 41 41 H 0.97000 * 120.00489 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.43824 * 179.97438 * 24 15 14 43 43 H 1.08005 * 119.36576 * 180.02562 * 25 24 15 44 44 H 1.09000 * 109.62981 * 68.25731 * 27 9 8 45 45 H 1.08999 * 109.62785 * 188.83016 * 27 9 8 46 46 H 1.09004 * 109.49676 * 292.71162 * 28 6 5 47 47 H 1.09000 * 109.49118 * 52.76138 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 7 4.1357 2.5521 0.0002 7 6 5.5845 2.5980 0.2378 8 6 6.0244 4.0556 0.4113 9 7 5.5604 4.8255 -0.7529 10 6 6.4103 5.6057 -1.4496 11 8 7.5944 5.6118 -1.1743 12 7 5.9483 6.3750 -2.4553 13 6 6.8082 7.2553 -3.1114 14 6 6.3034 8.1201 -4.0702 15 6 7.1900 8.9999 -4.7204 16 6 6.7278 9.9031 -5.7074 17 1 5.9777 9.5889 -6.4181 18 6 7.2431 11.2040 -5.7624 19 7 6.8659 12.0168 -6.7144 20 14 8.4692 11.7783 -4.4754 21 1 9.8484 11.4789 -4.9374 22 1 8.3225 13.2416 -4.2701 23 1 8.2114 11.0705 -3.1956 24 6 8.5537 8.9542 -4.3584 25 6 8.9581 8.0674 -3.4015 26 7 8.0980 7.2596 -2.8083 27 6 4.1430 4.7259 -1.1329 28 6 3.7786 3.2374 -1.2492 29 1 -0.3633 0.5139 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.9500 -0.8400 -0.0004 33 1 4.0089 0.6535 -0.8908 34 1 4.0096 0.6530 0.8891 35 1 6.1067 2.1593 -0.6126 36 1 5.8231 2.0362 1.1409 37 1 7.1115 4.1052 0.4733 38 1 5.5839 4.4652 1.3204 39 1 5.0177 6.3163 -2.7226 40 1 5.2513 8.1185 -4.3142 41 1 7.2225 12.9181 -6.7524 42 1 9.2679 9.6112 -4.8323 43 1 10.0004 8.0293 -3.1212 44 1 3.5252 5.1987 -0.3695 45 1 3.9857 5.2188 -2.0923 46 1 4.3258 2.7897 -2.0789 47 1 2.7074 3.1387 -1.4248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426071197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:28 Heat of formation + Delta-G solvation = 11.641949 kcal Electronic energy + Delta-G solvation = -30038.324210 eV Core-core repulsion = 25836.441919 eV Total energy + Delta-G solvation = -4201.882291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.62294 -39.99663 -38.73446 -37.60366 -35.01925 -34.55272 -34.50679 -33.58221 -31.30568 -31.21051 -29.96125 -28.81227 -27.08348 -25.96317 -24.78249 -24.00826 -22.38551 -21.92401 -20.95659 -20.79514 -19.17112 -18.43705 -17.74608 -17.57759 -16.53483 -16.26507 -16.05561 -15.61284 -15.48010 -15.13162 -15.05299 -14.86229 -14.76464 -14.34245 -14.17224 -13.85936 -13.76392 -13.49681 -13.22212 -13.08858 -12.83007 -12.73860 -12.52998 -12.35853 -12.22511 -11.61238 -11.50095 -11.41090 -11.34427 -11.17825 -10.78801 -10.61912 -10.17051 -9.99532 -9.73460 -9.69478 -9.57086 -9.28652 -8.84371 -8.43095 -8.16963 -7.90944 -7.22963 -6.90653 -4.67920 2.25449 2.38114 2.60184 2.65326 2.77529 3.13151 3.21801 3.32017 3.56162 3.68593 3.98611 3.99661 4.30017 4.60069 4.66310 4.71068 4.78234 4.80773 4.82726 5.04303 5.05983 5.08879 5.17673 5.26473 5.35024 5.36030 5.57512 5.59825 5.69865 5.75284 5.91227 5.93853 6.20995 6.34033 6.43156 6.46361 6.51370 6.57552 6.68356 6.98033 7.03253 7.10095 7.17311 7.23805 7.68671 7.83869 7.93269 8.13690 8.28565 8.45948 8.73187 8.97297 9.44691 10.11575 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.002069 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.786700 B =13531.470663 C =14460.475749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.740 5.740 3 C 0.511 3.489 4 O -0.516 6.516 5 C 0.036 3.964 6 N -0.520 5.520 7 C 0.042 3.958 8 C 0.138 3.862 9 N -0.638 5.638 10 C 0.697 3.303 11 O -0.529 6.529 12 N -0.670 5.670 13 C 0.375 3.625 14 C -0.285 4.285 15 C 0.134 3.866 16 C -0.450 4.450 17 H 0.094 0.906 18 C 0.086 3.914 19 N -0.817 5.817 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.244 1.244 24 C -0.289 4.289 25 C 0.134 3.866 26 N -0.546 5.546 27 C 0.120 3.880 28 C 0.038 3.962 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.401 0.599 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.404 0.596 40 H 0.111 0.889 41 H 0.286 0.714 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -23.527 12.961 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.394 5.394 3 C 0.297 3.703 4 O -0.390 6.390 5 C -0.095 4.095 6 N -0.245 5.245 7 C -0.086 4.086 8 C 0.014 3.986 9 N -0.379 5.379 10 C 0.399 3.601 11 O -0.400 6.400 12 N -0.320 5.320 13 C 0.147 3.853 14 C -0.311 4.311 15 C 0.125 3.875 16 C -0.481 4.481 17 H 0.112 0.888 18 C -0.132 4.132 19 N -0.443 5.443 20 Si 0.737 3.263 21 H -0.193 1.193 22 H -0.218 1.218 23 H -0.168 1.168 24 C -0.312 4.312 25 C -0.019 4.019 26 N -0.265 5.265 27 C -0.004 4.004 28 C -0.090 4.090 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.241 0.759 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.054 0.946 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.415 -22.858 14.089 28.454 hybrid contribution 0.138 -0.007 -1.103 1.112 sum -9.277 -22.865 12.986 27.884 Atomic orbital electron populations 1.21524 0.79408 1.02177 1.02468 1.45813 1.07890 1.08713 1.76962 1.20623 0.90010 0.83699 0.76005 1.90707 1.70019 1.30935 1.47386 1.21953 0.92293 0.91927 1.03340 1.61603 1.13810 1.12890 1.36205 1.22580 0.86542 0.98077 1.01413 1.21461 1.01209 0.88532 0.87356 1.47458 1.08892 1.49193 1.32323 1.15961 0.85067 0.79243 0.79866 1.91008 1.13284 1.67234 1.68453 1.42799 1.12910 1.41062 1.35254 1.17909 0.88367 0.88489 0.90507 1.21336 0.99518 1.05961 1.04284 1.17740 0.90194 0.90264 0.89305 1.19375 1.21307 0.95337 1.12108 0.88826 1.26038 0.95144 0.96530 0.95475 1.69563 1.38052 1.07594 1.29072 0.86340 0.80345 0.76697 0.82968 1.19340 1.21828 1.16765 1.21798 0.96695 1.06185 1.06521 1.21602 0.97429 0.91055 0.91794 1.67323 1.00996 1.27308 1.30841 1.21740 0.82099 0.95733 1.00855 1.22736 1.02694 0.94306 0.89307 0.92187 0.90713 0.92154 0.76585 0.91797 0.87615 0.94011 0.89425 0.88237 0.91079 0.75891 0.87093 0.90388 0.87275 0.85313 0.90262 0.90258 0.94634 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 10.70 59.85 0.64 1.04 16 2 N -0.74 -3.64 5.71 -67.07 -0.38 -4.02 16 3 C 0.51 4.15 7.49 -10.98 -0.08 4.07 16 4 O -0.52 -6.38 14.33 5.56 0.08 -6.30 16 5 C 0.04 0.23 5.45 -4.98 -0.03 0.21 16 6 N -0.52 -4.85 4.37 -235.47 -1.03 -5.88 16 7 C 0.04 0.38 5.62 -3.70 -0.02 0.36 16 8 C 0.14 1.63 6.61 -3.60 -0.02 1.60 16 9 N -0.64 -8.96 3.00 -177.91 -0.53 -9.49 16 10 C 0.70 13.02 8.27 -86.91 -0.72 12.30 16 11 O -0.53 -12.01 14.05 5.30 0.07 -11.93 16 12 N -0.67 -12.45 5.30 -15.86 -0.08 -12.54 16 13 C 0.37 8.56 7.42 -154.68 -1.15 7.41 16 14 C -0.29 -6.64 9.74 -38.46 -0.37 -7.01 16 15 C 0.13 3.39 5.03 -106.55 -0.54 2.86 16 16 C -0.45 -12.04 9.66 -37.65 -0.36 -12.41 16 17 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 18 C 0.09 2.26 5.51 -17.34 -0.10 2.16 16 19 N -0.82 -21.74 13.92 55.55 0.77 -20.97 16 20 Si 0.91 20.92 24.52 -169.99 -4.17 16.75 16 21 H -0.27 -5.91 6.80 56.52 0.38 -5.53 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.24 -5.86 6.51 56.52 0.37 -5.49 16 24 C -0.29 -7.02 6.92 -39.07 -0.27 -7.29 16 25 C 0.13 3.16 11.10 -18.05 -0.20 2.96 16 26 N -0.55 -13.45 7.85 -12.75 -0.10 -13.55 16 27 C 0.12 1.36 6.57 -3.37 -0.02 1.34 16 28 C 0.04 0.39 5.27 -3.47 -0.02 0.37 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.40 0.70 8.83 -40.82 -0.36 0.34 16 33 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.11 0.44 7.97 -51.93 -0.41 0.03 16 35 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.09 0.57 7.99 -51.93 -0.41 0.16 16 37 H 0.10 1.31 7.04 -51.93 -0.37 0.94 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 6.01 6.22 -40.82 -0.25 5.75 16 40 H 0.11 2.34 8.06 -52.49 -0.42 1.91 16 41 H 0.29 6.92 8.29 -40.82 -0.34 6.58 16 42 H 0.11 2.57 4.99 -52.49 -0.26 2.31 16 43 H 0.13 2.64 8.06 -52.48 -0.42 2.22 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.82 5.72 -51.93 -0.30 0.52 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 1.11 5.76 -51.93 -0.30 0.81 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -35.91 376.98 -9.45 -45.36 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.50 Total: 6.91 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -3.26 Total: 9.97 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -1.36 Total: -66.45 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.15 Total: -18.23 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.17 Total: 16.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.91 -9.45 -45.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426071197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.001 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds