Wall clock time and date at job start Wed Apr 1 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00062 * 2 1 4 4 O 1.21283 * 120.00443 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99985 * 180.02562 * 3 2 1 6 6 N 1.46896 * 109.47287 * 180.02562 * 5 3 2 7 7 C 1.46896 * 111.00011 * 169.99801 * 6 5 3 8 8 C 1.53242 * 109.34005 * 187.24948 * 7 6 5 9 9 N 1.47081 * 108.52238 * 306.17361 * 8 7 6 10 10 C 1.34776 * 120.87907 * 231.18597 * 9 8 7 11 11 O 1.21577 * 120.00127 * 4.88859 * 10 9 8 12 12 N 1.34782 * 119.99810 * 184.61280 * 10 9 8 13 13 C 1.39459 * 119.99731 * 175.27660 * 12 10 9 14 14 C 1.38645 * 119.64497 * 185.20313 * 13 12 10 15 15 C 1.40816 * 118.67207 * 180.02562 * 14 13 12 16 16 C 1.41543 * 120.99760 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99968 * 320.48972 * 16 15 14 18 18 C 1.40032 * 120.00093 * 140.49071 * 16 15 14 19 19 N 1.30742 * 119.99981 * 176.57799 * 18 16 15 20 20 Si 1.86798 * 120.00404 * 356.57535 * 18 16 15 21 21 H 1.48504 * 109.47021 * 89.99902 * 20 18 16 22 22 H 1.48495 * 109.47234 * 210.00433 * 20 18 16 23 23 H 1.48500 * 109.46680 * 330.00664 * 20 18 16 24 24 C 1.41166 * 118.00910 * 359.97438 * 15 14 13 25 25 C 1.36592 * 119.12260 * 0.02562 * 24 15 14 26 26 N 1.32062 * 121.26153 * 359.72335 * 25 24 15 27 27 C 1.47078 * 118.23645 * 51.45273 * 9 8 7 28 28 C 1.46900 * 110.99857 * 294.29871 * 6 5 3 29 29 H 1.08994 * 109.47301 * 59.99098 * 1 2 3 30 30 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46521 * 299.99654 * 1 2 3 32 32 H 0.96997 * 119.99690 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47015 * 60.00172 * 5 3 2 34 34 H 1.09004 * 109.46729 * 300.00527 * 5 3 2 35 35 H 1.09008 * 109.48987 * 67.29373 * 7 6 5 36 36 H 1.08998 * 109.49768 * 307.21061 * 7 6 5 37 37 H 1.08995 * 109.62987 * 186.46345 * 8 7 6 38 38 H 1.09001 * 109.62492 * 65.88430 * 8 7 6 39 39 H 0.96999 * 119.99962 * 355.27499 * 12 10 9 40 40 H 1.07997 * 120.66238 * 359.97438 * 14 13 12 41 41 H 0.97000 * 120.00489 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.43824 * 179.97438 * 24 15 14 43 43 H 1.08005 * 119.36576 * 180.02562 * 25 24 15 44 44 H 1.09000 * 109.62981 * 68.25731 * 27 9 8 45 45 H 1.08999 * 109.62785 * 188.83016 * 27 9 8 46 46 H 1.09004 * 109.49676 * 292.71162 * 28 6 5 47 47 H 1.09000 * 109.49118 * 52.76138 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 7 4.1357 2.5521 0.0002 7 6 5.5845 2.5980 0.2378 8 6 6.0244 4.0556 0.4113 9 7 5.5604 4.8255 -0.7529 10 6 6.4103 5.6057 -1.4496 11 8 7.5944 5.6118 -1.1743 12 7 5.9483 6.3750 -2.4553 13 6 6.8082 7.2553 -3.1114 14 6 6.3034 8.1201 -4.0702 15 6 7.1900 8.9999 -4.7204 16 6 6.7278 9.9031 -5.7074 17 1 5.9777 9.5889 -6.4181 18 6 7.2431 11.2040 -5.7624 19 7 6.8659 12.0168 -6.7144 20 14 8.4692 11.7783 -4.4754 21 1 9.8484 11.4789 -4.9374 22 1 8.3225 13.2416 -4.2701 23 1 8.2114 11.0705 -3.1956 24 6 8.5537 8.9542 -4.3584 25 6 8.9581 8.0674 -3.4015 26 7 8.0980 7.2596 -2.8083 27 6 4.1430 4.7259 -1.1329 28 6 3.7786 3.2374 -1.2492 29 1 -0.3633 0.5139 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.9500 -0.8400 -0.0004 33 1 4.0089 0.6535 -0.8908 34 1 4.0096 0.6530 0.8891 35 1 6.1067 2.1593 -0.6126 36 1 5.8231 2.0362 1.1409 37 1 7.1115 4.1052 0.4733 38 1 5.5839 4.4652 1.3204 39 1 5.0177 6.3163 -2.7226 40 1 5.2513 8.1185 -4.3142 41 1 7.2225 12.9181 -6.7524 42 1 9.2679 9.6112 -4.8323 43 1 10.0004 8.0293 -3.1212 44 1 3.5252 5.1987 -0.3695 45 1 3.9857 5.2188 -2.0923 46 1 4.3258 2.7897 -2.0789 47 1 2.7074 3.1387 -1.4248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001426071197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:20 Heat of formation + Delta-G solvation = -16.210544 kcal Electronic energy + Delta-G solvation = -30039.531985 eV Core-core repulsion = 25836.441919 eV Total energy + Delta-G solvation = -4203.090065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.84671 -40.91195 -40.21807 -38.73286 -36.26429 -35.76037 -35.52405 -35.26075 -33.17994 -32.20744 -31.02222 -30.13118 -27.95911 -27.76239 -25.55148 -24.91850 -23.89695 -23.65912 -22.15574 -21.45276 -20.51378 -20.02346 -19.13363 -18.24277 -17.94687 -17.36216 -17.16212 -16.83894 -16.58699 -16.36875 -16.28003 -16.03321 -15.78890 -15.64407 -15.40212 -15.06963 -14.93036 -14.89846 -14.64622 -14.30828 -14.18976 -13.82785 -13.38559 -13.22905 -13.05655 -13.00612 -12.87753 -12.67244 -12.56442 -12.43795 -12.24642 -12.18288 -11.85792 -11.46949 -11.27637 -11.17330 -10.84233 -10.11955 -10.08219 -9.82128 -9.75070 -9.31958 -8.95749 -8.87444 -6.71555 0.55361 0.74909 1.28994 1.38729 1.44193 1.48239 1.68327 2.10862 2.14193 2.18634 2.68326 2.73997 2.94142 3.45951 3.74496 3.84871 3.91084 4.00614 4.13500 4.15198 4.26642 4.40539 4.42022 4.44504 4.50859 4.53316 4.58532 4.63919 4.66205 4.73008 4.77158 4.80377 4.82081 4.98815 5.03507 5.19021 5.24101 5.39819 5.45354 5.50501 5.66731 5.76517 5.91282 5.96029 6.09377 6.26359 6.50123 6.63196 6.70180 6.75369 7.34397 7.43228 7.70799 8.19739 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.002069 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.786700 B =13531.470663 C =14460.475749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.726 5.726 3 C 0.506 3.494 4 O -0.567 6.567 5 C 0.038 3.962 6 N -0.533 5.533 7 C 0.053 3.947 8 C 0.131 3.869 9 N -0.627 5.627 10 C 0.694 3.306 11 O -0.573 6.573 12 N -0.662 5.662 13 C 0.375 3.625 14 C -0.289 4.289 15 C 0.119 3.881 16 C -0.477 4.477 17 H 0.067 0.933 18 C 0.053 3.947 19 N -0.850 5.850 20 Si 0.961 3.039 21 H -0.250 1.250 22 H -0.278 1.278 23 H -0.260 1.260 24 C -0.296 4.296 25 C 0.132 3.868 26 N -0.563 5.563 27 C 0.116 3.884 28 C 0.047 3.953 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.419 0.581 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.037 0.963 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.420 0.580 40 H 0.127 0.873 41 H 0.295 0.705 42 H 0.116 0.884 43 H 0.159 0.841 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.034 0.966 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 -25.862 14.689 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.380 5.380 3 C 0.292 3.708 4 O -0.445 6.445 5 C -0.092 4.092 6 N -0.258 5.258 7 C -0.075 4.075 8 C 0.009 3.991 9 N -0.366 5.366 10 C 0.395 3.605 11 O -0.447 6.447 12 N -0.313 5.313 13 C 0.146 3.854 14 C -0.314 4.314 15 C 0.110 3.890 16 C -0.508 4.508 17 H 0.085 0.915 18 C -0.162 4.162 19 N -0.478 5.478 20 Si 0.785 3.215 21 H -0.175 1.175 22 H -0.205 1.205 23 H -0.184 1.184 24 C -0.319 4.319 25 C -0.021 4.021 26 N -0.282 5.282 27 C -0.007 4.007 28 C -0.081 4.081 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.255 0.745 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.055 0.945 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.260 0.740 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.176 0.824 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.342 -25.284 15.824 31.257 hybrid contribution -0.027 0.511 -1.544 1.627 sum -9.369 -24.774 14.280 30.090 Atomic orbital electron populations 1.21601 0.79168 1.03960 1.01137 1.45737 1.08166 1.08785 1.75262 1.20999 0.90802 0.83702 0.75272 1.90690 1.71027 1.32782 1.50035 1.22059 0.91027 0.90526 1.05599 1.61551 1.13877 1.14891 1.35521 1.22500 0.86247 0.95983 1.02739 1.21673 1.00473 0.90347 0.86649 1.47501 1.09370 1.47818 1.31938 1.16122 0.85055 0.79460 0.79848 1.90973 1.15314 1.68754 1.69660 1.42689 1.13249 1.40285 1.35075 1.18086 0.88388 0.88661 0.90235 1.21508 1.00254 1.05553 1.04101 1.17906 0.91210 0.90531 0.89320 1.19347 1.21928 0.96555 1.12997 0.91515 1.26651 0.96399 0.96247 0.96915 1.69588 1.39409 1.08367 1.30415 0.85560 0.79302 0.76692 0.79932 1.17512 1.20479 1.18433 1.21896 0.96339 1.06744 1.06946 1.22070 0.98755 0.90195 0.91103 1.67456 1.01854 1.27674 1.31220 1.21919 0.80308 0.97161 1.01276 1.22572 1.02264 0.93333 0.89974 0.93592 0.87360 0.93479 0.74464 0.89917 0.84679 0.94476 0.86264 0.89787 0.90273 0.73970 0.85489 0.89447 0.86618 0.82406 0.90082 0.89522 0.94776 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.70 127.77 1.37 2.01 16 2 N -0.73 -5.38 5.71 -484.51 -2.77 -8.15 16 3 C 0.51 7.22 7.49 87.66 0.66 7.87 16 4 O -0.57 -13.60 14.33 -3.04 -0.04 -13.65 16 5 C 0.04 0.37 5.45 85.56 0.47 0.84 16 6 N -0.53 -8.63 4.37 -898.88 -3.93 -12.56 16 7 C 0.05 0.81 5.62 86.39 0.49 1.30 16 8 C 0.13 2.90 6.61 86.35 0.57 3.47 16 9 N -0.63 -16.91 3.00 -835.06 -2.51 -19.42 16 10 C 0.69 25.44 8.27 179.05 1.48 26.92 16 11 O -0.57 -25.85 14.05 -3.96 -0.06 -25.90 16 12 N -0.66 -24.06 5.30 -322.36 -1.71 -25.77 16 13 C 0.38 16.92 7.42 132.76 0.99 17.91 16 14 C -0.29 -13.41 9.74 23.00 0.22 -13.19 16 15 C 0.12 6.08 5.03 -21.11 -0.11 5.97 16 16 C -0.48 -26.17 9.66 23.52 0.23 -25.94 16 17 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 18 C 0.05 2.79 5.51 85.29 0.47 3.26 16 19 N -0.85 -45.92 13.92 21.84 0.30 -45.62 16 20 Si 0.96 42.72 24.52 68.60 1.68 44.40 16 21 H -0.25 -10.36 6.80 99.48 0.68 -9.68 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.26 -12.16 6.51 99.48 0.65 -11.51 16 24 C -0.30 -14.20 6.92 22.60 0.16 -14.04 16 25 C 0.13 6.06 11.10 84.27 0.94 6.99 16 26 N -0.56 -27.31 7.85 -194.27 -1.53 -28.84 16 27 C 0.12 2.50 6.57 86.50 0.57 3.07 16 28 C 0.05 0.90 5.27 86.54 0.46 1.35 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.42 0.06 8.83 -92.71 -0.82 -0.76 16 33 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 34 H 0.14 0.53 7.97 -2.39 -0.02 0.51 16 35 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.12 1.09 7.99 -2.39 -0.02 1.07 16 37 H 0.08 2.15 7.04 -2.39 -0.02 2.13 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.42 12.05 6.22 -92.71 -0.58 11.48 16 40 H 0.13 5.34 8.06 -2.91 -0.02 5.32 16 41 H 0.29 14.35 8.29 -92.71 -0.77 13.59 16 42 H 0.12 5.32 4.99 -2.91 -0.01 5.31 16 43 H 0.16 6.15 8.06 -2.91 -0.02 6.13 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.09 1.69 5.72 -2.39 -0.01 1.68 16 46 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.10 2.03 5.76 -2.39 -0.01 2.01 16 Total: -1.00 -79.36 376.98 -2.06 -81.42 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.46 Total: 26.29 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 8.94 Total: 27.79 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -12.13 Total: -140.35 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.10 Total: -39.55 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.68 Total: 44.40 kcal Total: -79.36 -2.06 -81.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426071197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.208 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds