Wall clock time and date at job start Wed Apr 1 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 119.99474 * 2 1 4 4 O 1.21583 * 120.00545 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99467 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99820 * 179.97438 * 5 3 2 7 7 C 1.53049 * 109.45943 * 205.00009 * 6 5 3 8 8 C 1.53185 * 109.31307 * 178.62725 * 7 6 5 9 9 N 1.46928 * 108.77612 * 54.63283 * 8 7 6 10 10 C 1.34781 * 120.62762 * 126.36784 * 9 8 7 11 11 O 1.21579 * 119.99662 * 174.86362 * 10 9 8 12 12 N 1.34771 * 120.00085 * 354.86551 * 10 9 8 13 13 C 1.39469 * 119.99640 * 185.59687 * 12 10 9 14 14 C 1.38639 * 119.64457 * 185.38909 * 13 12 10 15 15 C 1.40818 * 118.67440 * 180.02562 * 14 13 12 16 16 C 1.41547 * 120.99729 * 180.29526 * 15 14 13 17 17 H 1.08005 * 119.99489 * 145.66940 * 16 15 14 18 18 C 1.40020 * 120.00328 * 325.66865 * 16 15 14 19 19 N 1.30746 * 120.00059 * 4.17837 * 18 16 15 20 20 Si 1.86802 * 120.00424 * 184.18168 * 18 16 15 21 21 H 1.48505 * 109.46577 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47196 * 119.99733 * 20 18 16 23 23 H 1.48494 * 109.47319 * 240.00220 * 20 18 16 24 24 C 1.41164 * 118.00707 * 0.02562 * 15 14 13 25 25 C 1.36599 * 119.12373 * 359.97438 * 24 15 14 26 26 N 1.32068 * 121.25932 * 359.97438 * 25 24 15 27 27 C 1.46927 * 118.74154 * 306.64668 * 9 8 7 28 28 C 1.52761 * 109.00758 * 53.30332 * 27 9 8 29 29 H 1.08999 * 109.47266 * 299.99657 * 1 2 3 30 30 H 1.08991 * 109.47036 * 60.00264 * 1 2 3 31 31 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99650 * 179.97438 * 2 1 3 33 33 H 0.97004 * 120.00206 * 359.97438 * 5 3 2 34 34 H 1.08996 * 109.45928 * 324.96989 * 6 5 3 35 35 H 1.08998 * 109.49954 * 58.67194 * 7 6 5 36 36 H 1.08997 * 109.52141 * 298.59673 * 7 6 5 37 37 H 1.08994 * 109.58942 * 294.84722 * 8 7 6 38 38 H 1.09000 * 109.70529 * 174.49100 * 8 7 6 39 39 H 0.97000 * 120.00365 * 5.59350 * 12 10 9 40 40 H 1.08001 * 120.66367 * 0.04417 * 14 13 12 41 41 H 0.96997 * 120.00454 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.44084 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.36755 * 180.02562 * 25 24 15 44 44 H 1.08993 * 109.58932 * 173.14215 * 27 9 8 45 45 H 1.09003 * 109.58236 * 293.56795 * 27 9 8 46 46 H 1.08998 * 109.56256 * 185.55413 * 28 27 9 47 47 H 1.08997 * 109.38488 * 65.52079 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.6069 2.2232 -0.6092 8 6 6.3569 3.5586 -0.6396 9 7 6.3734 4.1227 0.7169 10 6 7.5355 4.4837 1.2964 11 8 7.5289 5.0348 2.3801 12 7 8.7048 4.2336 0.6747 13 6 9.9103 4.4999 1.3234 14 6 11.1060 4.3465 0.6386 15 6 12.3112 4.6204 1.3136 16 6 13.5595 4.4860 0.6600 17 1 14.3703 5.1575 0.9013 18 6 13.7432 3.4828 -0.2993 19 7 12.7391 2.7227 -0.6509 20 14 15.4228 3.2301 -1.0769 21 1 16.3827 4.2119 -0.5113 22 1 15.8983 1.8526 -0.7913 23 1 15.3226 3.4247 -2.5456 24 6 12.2367 5.0386 2.6598 25 6 11.0115 5.1611 3.2511 26 7 9.9007 4.8967 2.5874 27 6 5.0996 4.2802 1.4321 28 6 4.3631 2.9419 1.4371 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8401 0.0004 33 1 3.9716 0.3272 0.0013 34 1 3.6720 3.1708 -0.5907 35 1 5.5037 1.8407 -1.6246 36 1 6.1638 1.5068 -0.0054 37 1 5.8500 4.2471 -1.3155 38 1 7.3796 3.3980 -0.9810 39 1 8.7079 3.8685 -0.2240 40 1 11.1130 4.0237 -0.3920 41 1 12.8662 2.0279 -1.3157 42 1 13.1366 5.2587 3.2149 43 1 10.9499 5.4812 4.2807 44 1 5.2928 4.5932 2.4581 45 1 4.4880 5.0289 0.9285 46 1 3.3747 3.0709 1.8781 47 1 4.9309 2.2186 2.0223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434742702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:13 Heat of formation + Delta-G solvation = -6.545787 kcal Electronic energy + Delta-G solvation = -30077.264794 eV Core-core repulsion = 25874.593824 eV Total energy + Delta-G solvation = -4202.670970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.62492 -39.96179 -38.47809 -37.27135 -34.89087 -34.60093 -34.35855 -33.75286 -31.33085 -31.15107 -30.45950 -28.48482 -26.99338 -25.97544 -24.58848 -23.54311 -22.00801 -21.80744 -21.14329 -20.64420 -19.40767 -18.72542 -18.18323 -17.55648 -16.70145 -15.97890 -15.74617 -15.42508 -15.26295 -14.92928 -14.87398 -14.60525 -14.48365 -14.17995 -14.01991 -13.80778 -13.51839 -13.21338 -13.04169 -12.86309 -12.62415 -12.57689 -12.47228 -12.25912 -11.97703 -11.45379 -11.42650 -11.19570 -11.08560 -10.90980 -10.84610 -10.48241 -10.28288 -10.11794 -9.71199 -9.60931 -9.52380 -9.39171 -9.12708 -8.48528 -7.89086 -7.74127 -7.01950 -6.68304 -4.63417 2.40345 2.67682 2.81274 2.89529 2.94630 3.02877 3.07979 3.23277 3.80226 3.88710 3.95382 4.13197 4.44855 4.66526 4.72825 4.81722 4.81924 5.03206 5.12058 5.17805 5.27594 5.34281 5.43470 5.54688 5.59883 5.65788 5.70344 5.81025 5.86929 6.01106 6.07825 6.11268 6.26861 6.48617 6.58985 6.60766 6.71476 6.80526 6.96713 7.16516 7.23222 7.40651 7.50288 7.69328 7.90460 8.09581 8.32215 8.34019 8.47289 8.73092 8.79102 9.15266 9.69906 10.16239 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.002156 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.387263 B =12983.211403 C =14204.864782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.754 5.754 3 C 0.702 3.298 4 O -0.589 6.589 5 N -0.741 5.741 6 C 0.166 3.834 7 C -0.142 4.142 8 C 0.116 3.884 9 N -0.637 5.637 10 C 0.697 3.303 11 O -0.531 6.531 12 N -0.668 5.668 13 C 0.351 3.649 14 C -0.233 4.233 15 C 0.142 3.858 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.807 5.807 20 Si 0.917 3.083 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.275 4.275 25 C 0.115 3.885 26 N -0.547 5.547 27 C 0.136 3.864 28 C -0.144 4.144 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.397 0.603 33 H 0.395 0.605 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.403 0.597 40 H 0.135 0.865 41 H 0.278 0.722 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.603 -8.924 -4.965 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.402 3.598 4 O -0.466 6.466 5 N -0.396 5.396 6 C 0.061 3.939 7 C -0.181 4.181 8 C -0.008 4.008 9 N -0.378 5.378 10 C 0.398 3.602 11 O -0.402 6.402 12 N -0.318 5.318 13 C 0.124 3.876 14 C -0.259 4.259 15 C 0.133 3.867 16 C -0.491 4.491 17 H 0.099 0.901 18 C -0.143 4.143 19 N -0.435 5.435 20 Si 0.742 3.258 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.299 4.299 25 C -0.039 4.039 26 N -0.266 5.266 27 C 0.012 3.988 28 C -0.184 4.184 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.230 0.770 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.240 0.760 40 H 0.153 0.847 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.141 0.859 44 H 0.115 0.885 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.118 -7.610 -3.865 20.937 hybrid contribution 1.983 -1.603 -1.342 2.881 sum -17.136 -9.214 -5.206 20.140 Atomic orbital electron populations 1.21382 0.78184 1.01890 1.02302 1.44947 1.07798 1.07200 1.80972 1.15990 0.81864 0.84265 0.77716 1.90938 1.67839 1.30245 1.57617 1.45251 1.04526 1.09748 1.80029 1.20816 0.91360 0.84931 0.96817 1.22222 0.95149 0.98760 1.02007 1.21514 1.01081 0.93766 0.84479 1.47421 1.05825 1.68159 1.16358 1.15976 0.79988 0.80003 0.84193 1.90995 1.84766 1.44482 1.19968 1.42770 1.03422 1.66783 1.18812 1.18048 0.83319 0.96242 0.89978 1.21761 0.89654 1.12862 1.01633 1.17621 0.92806 0.86352 0.89892 1.19553 0.97543 1.13918 1.18094 0.90122 1.25898 0.98801 0.94818 0.94780 1.69719 1.31712 1.16065 1.25955 0.86112 0.81724 0.79011 0.78958 1.18466 1.19931 1.19905 1.21795 0.97366 1.14185 0.96513 1.21499 0.87803 0.96724 0.97860 1.67178 1.30935 1.21067 1.07415 1.21234 0.82648 0.95788 0.99115 1.22288 1.01253 0.98034 0.96826 0.92377 0.92399 0.90754 0.77019 0.77103 0.89110 0.90040 0.90608 0.91004 0.89801 0.75966 0.84699 0.91128 0.87899 0.85948 0.88487 0.91741 0.90257 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.62 10.70 59.85 0.64 1.26 16 2 N -0.75 -5.06 5.72 -72.07 -0.41 -5.47 16 3 C 0.70 7.19 8.53 -86.92 -0.74 6.45 16 4 O -0.59 -8.58 16.01 5.29 0.08 -8.49 16 5 N -0.74 -6.02 5.08 -58.63 -0.30 -6.32 16 6 C 0.17 1.57 2.42 -67.89 -0.16 1.40 16 7 C -0.14 -1.19 5.55 -26.61 -0.15 -1.34 16 8 C 0.12 1.20 6.43 -3.71 -0.02 1.17 16 9 N -0.64 -9.09 2.98 -178.77 -0.53 -9.62 16 10 C 0.70 13.64 8.25 -86.92 -0.72 12.92 16 11 O -0.53 -12.69 14.08 5.30 0.07 -12.62 16 12 N -0.67 -13.24 5.30 -15.86 -0.08 -13.33 16 13 C 0.35 8.53 7.41 -154.67 -1.15 7.38 16 14 C -0.23 -5.88 8.62 -38.46 -0.33 -6.21 16 15 C 0.14 3.71 5.57 -106.55 -0.59 3.12 16 16 C -0.46 -11.75 9.11 -37.65 -0.34 -12.10 16 17 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 18 C 0.07 1.76 5.44 -17.35 -0.09 1.67 16 19 N -0.81 -19.67 10.66 55.55 0.59 -19.08 16 20 Si 0.92 18.04 29.56 -169.99 -5.03 13.02 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.27 -6.73 9.85 -39.06 -0.38 -7.11 16 25 C 0.12 2.77 11.10 -18.04 -0.20 2.57 16 26 N -0.55 -14.10 7.90 -12.75 -0.10 -14.20 16 27 C 0.14 1.76 6.39 -3.93 -0.03 1.73 16 28 C -0.14 -1.59 5.63 -26.84 -0.15 -1.74 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.40 1.45 8.84 -40.82 -0.36 1.09 16 33 H 0.40 2.17 8.62 -40.82 -0.35 1.82 16 34 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.84 5.57 -51.93 -0.29 0.55 16 39 H 0.40 6.60 6.16 -40.82 -0.25 6.35 16 40 H 0.14 3.38 6.22 -52.49 -0.33 3.05 16 41 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 42 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 44 H 0.10 1.46 7.04 -51.93 -0.37 1.09 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -35.28 385.15 -10.85 -46.13 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.54 Total: 12.98 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -4.42 Total: 11.19 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.83 Total: -68.01 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.16 Total: -21.11 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.28 -10.85 -46.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434742702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.586 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds