Wall clock time and date at job start Wed Apr 1 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 119.99474 * 2 1 4 4 O 1.21583 * 120.00545 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99467 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99820 * 179.97438 * 5 3 2 7 7 C 1.53049 * 109.45943 * 205.00009 * 6 5 3 8 8 C 1.53185 * 109.31307 * 178.62725 * 7 6 5 9 9 N 1.46928 * 108.77612 * 54.63283 * 8 7 6 10 10 C 1.34781 * 120.62762 * 126.36784 * 9 8 7 11 11 O 1.21579 * 119.99662 * 174.86362 * 10 9 8 12 12 N 1.34771 * 120.00085 * 354.86551 * 10 9 8 13 13 C 1.39469 * 119.99640 * 185.59687 * 12 10 9 14 14 C 1.38639 * 119.64457 * 185.38909 * 13 12 10 15 15 C 1.40818 * 118.67440 * 180.02562 * 14 13 12 16 16 C 1.41547 * 120.99729 * 180.29526 * 15 14 13 17 17 H 1.08005 * 119.99489 * 145.66940 * 16 15 14 18 18 C 1.40020 * 120.00328 * 325.66865 * 16 15 14 19 19 N 1.30746 * 120.00059 * 4.17837 * 18 16 15 20 20 Si 1.86802 * 120.00424 * 184.18168 * 18 16 15 21 21 H 1.48505 * 109.46577 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47196 * 119.99733 * 20 18 16 23 23 H 1.48494 * 109.47319 * 240.00220 * 20 18 16 24 24 C 1.41164 * 118.00707 * 0.02562 * 15 14 13 25 25 C 1.36599 * 119.12373 * 359.97438 * 24 15 14 26 26 N 1.32068 * 121.25932 * 359.97438 * 25 24 15 27 27 C 1.46927 * 118.74154 * 306.64668 * 9 8 7 28 28 C 1.52761 * 109.00758 * 53.30332 * 27 9 8 29 29 H 1.08999 * 109.47266 * 299.99657 * 1 2 3 30 30 H 1.08991 * 109.47036 * 60.00264 * 1 2 3 31 31 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99650 * 179.97438 * 2 1 3 33 33 H 0.97004 * 120.00206 * 359.97438 * 5 3 2 34 34 H 1.08996 * 109.45928 * 324.96989 * 6 5 3 35 35 H 1.08998 * 109.49954 * 58.67194 * 7 6 5 36 36 H 1.08997 * 109.52141 * 298.59673 * 7 6 5 37 37 H 1.08994 * 109.58942 * 294.84722 * 8 7 6 38 38 H 1.09000 * 109.70529 * 174.49100 * 8 7 6 39 39 H 0.97000 * 120.00365 * 5.59350 * 12 10 9 40 40 H 1.08001 * 120.66367 * 0.04417 * 14 13 12 41 41 H 0.96997 * 120.00454 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.44084 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.36755 * 180.02562 * 25 24 15 44 44 H 1.08993 * 109.58932 * 173.14215 * 27 9 8 45 45 H 1.09003 * 109.58236 * 293.56795 * 27 9 8 46 46 H 1.08998 * 109.56256 * 185.55413 * 28 27 9 47 47 H 1.08997 * 109.38488 * 65.52079 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.6069 2.2232 -0.6092 8 6 6.3569 3.5586 -0.6396 9 7 6.3734 4.1227 0.7169 10 6 7.5355 4.4837 1.2964 11 8 7.5289 5.0348 2.3801 12 7 8.7048 4.2336 0.6747 13 6 9.9103 4.4999 1.3234 14 6 11.1060 4.3465 0.6386 15 6 12.3112 4.6204 1.3136 16 6 13.5595 4.4860 0.6600 17 1 14.3703 5.1575 0.9013 18 6 13.7432 3.4828 -0.2993 19 7 12.7391 2.7227 -0.6509 20 14 15.4228 3.2301 -1.0769 21 1 16.3827 4.2119 -0.5113 22 1 15.8983 1.8526 -0.7913 23 1 15.3226 3.4247 -2.5456 24 6 12.2367 5.0386 2.6598 25 6 11.0115 5.1611 3.2511 26 7 9.9007 4.8967 2.5874 27 6 5.0996 4.2802 1.4321 28 6 4.3631 2.9419 1.4371 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8401 0.0004 33 1 3.9716 0.3272 0.0013 34 1 3.6720 3.1708 -0.5907 35 1 5.5037 1.8407 -1.6246 36 1 6.1638 1.5068 -0.0054 37 1 5.8500 4.2471 -1.3155 38 1 7.3796 3.3980 -0.9810 39 1 8.7079 3.8685 -0.2240 40 1 11.1130 4.0237 -0.3920 41 1 12.8662 2.0279 -1.3157 42 1 13.1366 5.2587 3.2149 43 1 10.9499 5.4812 4.2807 44 1 5.2928 4.5932 2.4581 45 1 4.4880 5.0289 0.9285 46 1 3.3747 3.0709 1.8781 47 1 4.9309 2.2186 2.0223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434742702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:10 Heat of formation + Delta-G solvation = -31.634796 kcal Electronic energy + Delta-G solvation = -30078.352735 eV Core-core repulsion = 25874.593824 eV Total energy + Delta-G solvation = -4203.758911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.80316 -41.05488 -40.06165 -38.53235 -36.12012 -35.79128 -35.51064 -35.42606 -32.53918 -32.24062 -32.05341 -30.18541 -27.89169 -27.64882 -25.60312 -24.53527 -23.79143 -23.28863 -22.07370 -21.76596 -20.71360 -19.71931 -19.54016 -19.09471 -17.66410 -17.47419 -17.09532 -16.64227 -16.49100 -16.23905 -16.02910 -15.87436 -15.56978 -15.44047 -15.33904 -15.00444 -14.65264 -14.58064 -14.43765 -14.29053 -13.94989 -13.78097 -13.39095 -13.15817 -13.05982 -12.93680 -12.85738 -12.65930 -12.32499 -12.11607 -11.97780 -11.82777 -11.73000 -11.47128 -11.39627 -11.17612 -11.16951 -10.36409 -9.84448 -9.79007 -9.69258 -9.62783 -8.82339 -8.49929 -6.56605 0.82809 1.02815 1.43696 1.52605 1.55083 1.59081 1.75454 2.16163 2.23725 2.26860 2.80929 2.89134 3.34738 3.62495 3.73726 3.79314 4.00780 4.05107 4.15362 4.27025 4.37441 4.44056 4.50990 4.66232 4.68259 4.70834 4.77569 4.83677 4.85946 4.91680 4.96604 4.98376 5.03324 5.12608 5.22175 5.30192 5.49803 5.50558 5.54150 5.56022 5.66857 5.80142 6.02101 6.02918 6.26178 6.58041 6.80337 6.84798 6.90595 7.11956 7.56839 7.60743 7.88438 8.37152 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.002156 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.387263 B =12983.211403 C =14204.864782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.695 3.305 4 O -0.636 6.636 5 N -0.729 5.729 6 C 0.172 3.828 7 C -0.130 4.130 8 C 0.107 3.893 9 N -0.625 5.625 10 C 0.693 3.307 11 O -0.581 6.581 12 N -0.659 5.659 13 C 0.348 3.652 14 C -0.247 4.247 15 C 0.113 3.887 16 C -0.488 4.488 17 H 0.081 0.919 18 C 0.034 3.966 19 N -0.826 5.826 20 Si 0.991 3.009 21 H -0.261 1.261 22 H -0.268 1.268 23 H -0.263 1.263 24 C -0.287 4.287 25 C 0.109 3.891 26 N -0.574 5.574 27 C 0.136 3.864 28 C -0.132 4.132 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.111 0.889 32 H 0.414 0.586 33 H 0.411 0.589 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.418 0.582 40 H 0.132 0.868 41 H 0.289 0.711 42 H 0.117 0.883 43 H 0.148 0.852 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 -10.924 -6.827 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.397 5.397 3 C 0.394 3.606 4 O -0.518 6.518 5 N -0.384 5.384 6 C 0.066 3.934 7 C -0.168 4.168 8 C -0.016 4.016 9 N -0.364 5.364 10 C 0.395 3.605 11 O -0.456 6.456 12 N -0.310 5.310 13 C 0.121 3.879 14 C -0.273 4.273 15 C 0.104 3.896 16 C -0.519 4.519 17 H 0.099 0.901 18 C -0.180 4.180 19 N -0.453 5.453 20 Si 0.812 3.188 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.187 1.187 24 C -0.310 4.310 25 C -0.044 4.044 26 N -0.293 5.293 27 C 0.012 3.988 28 C -0.172 4.172 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.250 0.750 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.258 0.742 40 H 0.150 0.850 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.165 0.835 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.149 -9.698 -5.778 22.229 hybrid contribution 1.868 -1.021 -0.776 2.266 sum -17.281 -10.719 -6.554 21.365 Atomic orbital electron populations 1.21508 0.77531 1.03942 1.01091 1.44875 1.08250 1.06952 1.79574 1.16255 0.82297 0.84488 0.77533 1.90908 1.68862 1.32201 1.59807 1.45033 1.03966 1.10018 1.79348 1.20659 0.92045 0.85400 0.95314 1.22132 0.93710 0.97394 1.03607 1.21868 1.02128 0.95272 0.82300 1.47405 1.04398 1.66915 1.17672 1.16152 0.80897 0.79738 0.83745 1.90956 1.85666 1.46725 1.22228 1.42630 1.02503 1.66585 1.19330 1.18250 0.84632 0.95284 0.89759 1.21718 0.89945 1.14107 1.01540 1.18051 0.93624 0.87004 0.90881 1.19807 0.97530 1.15068 1.19522 0.90094 1.26765 1.02738 0.93897 0.94629 1.69752 1.33572 1.16074 1.25926 0.85007 0.76619 0.78898 0.78250 1.18429 1.19307 1.18735 1.21970 0.98152 1.14587 0.96334 1.21934 0.87501 0.96033 0.98949 1.67302 1.31631 1.22163 1.08236 1.21298 0.82231 0.97414 0.97834 1.22146 1.00225 0.96695 0.98120 0.93787 0.93477 0.87057 0.74975 0.75246 0.90049 0.87091 0.90711 0.88834 0.89356 0.74192 0.84996 0.90039 0.86454 0.83479 0.91070 0.90288 0.90940 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.70 127.77 1.37 2.41 16 2 N -0.74 -8.46 5.72 -500.19 -2.86 -11.32 16 3 C 0.69 13.26 8.53 179.06 1.53 14.79 16 4 O -0.64 -18.33 16.01 -3.98 -0.06 -18.39 16 5 N -0.73 -10.31 5.08 -457.68 -2.33 -12.63 16 6 C 0.17 2.93 2.42 45.02 0.11 3.04 16 7 C -0.13 -1.80 5.55 30.67 0.17 -1.63 16 8 C 0.11 1.98 6.43 86.36 0.56 2.54 16 9 N -0.62 -17.48 2.98 -837.77 -2.50 -19.97 16 10 C 0.69 27.42 8.25 179.05 1.48 28.89 16 11 O -0.58 -28.59 14.08 -3.96 -0.06 -28.65 16 12 N -0.66 -26.27 5.30 -322.37 -1.71 -27.98 16 13 C 0.35 17.26 7.41 132.76 0.98 18.25 16 14 C -0.25 -12.70 8.62 23.00 0.20 -12.50 16 15 C 0.11 6.02 5.57 -21.11 -0.12 5.90 16 16 C -0.49 -25.18 9.11 23.52 0.21 -24.97 16 17 H 0.08 4.03 7.85 -2.91 -0.02 4.00 16 18 C 0.03 1.63 5.44 85.29 0.46 2.09 16 19 N -0.83 -39.82 10.66 21.84 0.23 -39.59 16 20 Si 0.99 36.01 29.56 68.60 2.03 38.04 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 24 C -0.29 -14.26 9.85 22.60 0.22 -14.04 16 25 C 0.11 5.34 11.10 84.27 0.94 6.28 16 26 N -0.57 -30.17 7.90 -194.26 -1.53 -31.70 16 27 C 0.14 3.51 6.39 86.22 0.55 4.06 16 28 C -0.13 -2.83 5.63 30.53 0.17 -2.66 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.41 1.84 8.84 -92.71 -0.82 1.02 16 33 H 0.41 3.33 8.62 -92.71 -0.80 2.53 16 34 H 0.08 1.63 7.58 -2.39 -0.02 1.61 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.59 5.57 -2.39 -0.01 1.58 16 39 H 0.42 13.48 6.16 -92.71 -0.57 12.91 16 40 H 0.13 6.71 6.22 -2.91 -0.02 6.70 16 41 H 0.29 12.40 8.29 -92.71 -0.77 11.63 16 42 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 43 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 44 H 0.07 2.24 7.04 -2.39 -0.02 2.22 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.96 385.15 -1.10 -80.06 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -1.15 Total: 39.68 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 8.83 Total: 32.45 kcal Atomic # 7 Polarization: -132.50 SS G_CDS: -10.69 Total: -143.19 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.12 Total: -47.04 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -78.96 -1.10 -80.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434742702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.429 kcal (2) G-P(sol) polarization free energy of solvation -78.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds