Wall clock time and date at job start Wed Apr 1 2020 04:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.48560 * 111.00129 * 69.87505 * 16 15 13 18 18 C 1.54377 * 104.59882 * 159.03553 * 17 16 15 19 19 C 1.54256 * 105.05892 * 336.14816 * 18 17 16 20 20 C 1.53000 * 110.32441 * 241.09880 * 19 18 17 21 21 N 1.46502 * 110.32481 * 118.99605 * 19 18 17 22 22 C 1.34776 * 120.00076 * 61.45241 * 21 19 18 23 23 O 1.21285 * 120.00038 * 0.02562 * 22 21 19 24 24 C 1.50699 * 120.00042 * 180.02562 * 22 21 19 25 25 F 1.39902 * 109.47383 * 54.99797 * 24 22 21 26 26 F 1.39907 * 109.47191 * 174.99985 * 24 22 21 27 27 C 1.48561 * 110.99902 * 185.28874 * 16 15 13 28 28 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.09000 * 110.40968 * 277.82278 * 17 16 15 39 39 H 1.09003 * 110.41005 * 40.13943 * 17 16 15 40 40 H 1.09005 * 110.32012 * 95.04179 * 18 17 16 41 41 H 1.08991 * 110.32590 * 217.25250 * 18 17 16 42 42 H 1.09000 * 109.46808 * 58.54819 * 20 19 18 43 43 H 1.09001 * 109.47027 * 178.54869 * 20 19 18 44 44 H 1.08992 * 109.47327 * 298.54751 * 20 19 18 45 45 H 0.96999 * 120.00001 * 241.45518 * 21 19 18 46 46 H 1.08998 * 109.47159 * 294.99717 * 24 22 21 47 47 H 1.09005 * 110.41459 * 319.74535 * 27 16 15 48 48 H 1.09001 * 110.41012 * 82.18114 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 1.3194 3.3081 3.6839 18 6 1.4408 3.8164 5.1365 19 6 2.0183 2.6267 5.9306 20 6 1.0394 2.1916 7.0230 21 7 3.3099 2.9875 6.5203 22 6 3.3855 3.9945 7.4128 23 8 2.3841 4.6017 7.7282 24 6 4.7142 4.3660 8.0190 25 9 5.6329 4.6363 6.9991 26 9 4.5598 5.5022 8.8206 27 6 2.1972 1.4996 4.8909 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 5.7170 2.5725 -4.0840 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 1.5666 4.1034 2.9808 39 1 0.3140 2.9325 3.4935 40 1 2.1192 4.6683 5.1840 41 1 0.4600 4.0904 5.5250 42 1 0.0879 1.9150 6.5690 43 1 1.4494 1.3349 7.5580 44 1 0.8837 3.0147 7.7202 45 1 4.1108 2.5016 6.2683 46 1 5.0799 3.5390 8.6276 47 1 1.3290 0.8405 4.8915 48 1 3.1055 0.9332 5.0967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001439828504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:45 Heat of formation + Delta-G solvation = -149.379145 kcal Electronic energy + Delta-G solvation = -31778.115975 eV Core-core repulsion = 27118.562099 eV Total energy + Delta-G solvation = -4659.553876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.45576 -47.48537 -40.79315 -39.42121 -38.19850 -35.48308 -34.85847 -32.77856 -32.18022 -30.39029 -29.98696 -28.55950 -28.09672 -27.05467 -24.91874 -23.02262 -22.43994 -21.96483 -21.31092 -19.99312 -18.76733 -18.33874 -18.07627 -17.69934 -16.92152 -16.70512 -16.46521 -16.00484 -15.55276 -15.12917 -15.06274 -14.71003 -14.48819 -14.27307 -14.08681 -13.80305 -13.65490 -13.53912 -13.48274 -13.37676 -13.09493 -12.73890 -12.57006 -12.52432 -12.39560 -12.36446 -12.18882 -11.87586 -11.71809 -11.44182 -11.36655 -11.29052 -10.98743 -10.93005 -10.71563 -10.50351 -10.15363 -10.12915 -9.56757 -9.52428 -9.04451 -8.58485 -8.46141 -7.72015 -6.08176 -4.06736 1.80479 2.25386 3.28840 3.32393 3.34810 3.36889 3.45902 3.52407 3.72088 4.02182 4.13973 4.21307 4.34464 4.39821 4.50110 4.70206 4.89006 5.06382 5.09297 5.18526 5.20059 5.23620 5.25464 5.29111 5.39273 5.45005 5.49125 5.51086 5.64484 5.70822 5.85174 5.90613 5.96550 6.09259 6.11701 6.18032 6.33416 6.62992 6.72473 6.81412 6.91222 6.96618 7.35287 7.53936 7.61723 8.25216 8.47689 8.94207 9.01316 9.52274 11.05314 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.002586 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.487950 B =10826.108034 C =12060.663861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.510 3.490 14 O -0.521 6.521 15 C 0.027 3.973 16 N -0.487 5.487 17 C 0.033 3.967 18 C -0.121 4.121 19 C 0.172 3.828 20 C -0.158 4.158 21 N -0.695 5.695 22 C 0.474 3.526 23 O -0.500 6.500 24 C 0.256 3.744 25 F -0.184 7.184 26 F -0.177 7.177 27 C 0.030 3.970 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.409 0.591 46 H 0.135 0.865 47 H 0.063 0.937 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 -5.785 22.686 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.396 6.396 15 C -0.105 4.105 16 N -0.211 5.211 17 C -0.094 4.094 18 C -0.159 4.159 19 C 0.086 3.914 20 C -0.217 4.217 21 N -0.348 5.348 22 C 0.255 3.745 23 O -0.374 6.374 24 C 0.199 3.801 25 F -0.165 7.165 26 F -0.158 7.158 27 C -0.098 4.098 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.245 0.755 46 H 0.152 0.848 47 H 0.081 0.919 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.446 -4.456 22.616 24.549 hybrid contribution -0.687 -0.087 -0.803 1.060 sum -9.133 -4.542 21.813 24.081 Atomic orbital electron populations 1.22237 0.96884 1.01531 1.02129 1.21426 0.93265 0.84015 1.03060 1.47933 1.64546 1.13344 1.06982 1.19620 0.97282 0.93316 0.80021 1.21325 0.95333 1.32876 1.07035 0.90774 1.24854 0.94975 0.95799 0.97377 1.69891 1.15144 1.45033 1.23548 0.86860 0.81424 0.81667 0.79769 1.19910 1.21103 1.19139 1.20057 0.78709 0.87121 0.84604 1.90669 1.44278 1.17912 1.86784 1.22266 1.00563 0.96522 0.91130 1.65211 1.47295 1.08301 1.00252 1.23257 0.93143 0.95839 0.97188 1.22699 1.01854 0.97546 0.93845 1.21130 0.82706 0.95019 0.92558 1.22212 0.98350 1.02317 0.98792 1.46037 1.11575 1.34799 1.42386 1.21011 0.90909 0.81546 0.81019 1.90791 1.35832 1.51092 1.59653 1.21657 0.87210 0.87801 0.83404 1.93103 1.67519 1.94978 1.60950 1.93064 1.95912 1.53779 1.73082 1.23430 1.02147 0.95002 0.89268 0.91986 0.93219 0.92178 0.89672 0.91587 0.95374 0.94692 0.92578 0.92174 0.88159 0.88074 0.94034 0.90313 0.90312 0.91265 0.92214 0.90214 0.75502 0.84787 0.91907 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.11 1.55 5.93 -4.05 -0.02 1.53 16 3 N -0.60 -11.75 2.46 -175.06 -0.43 -12.18 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.23 16 5 C -0.53 -15.05 9.94 -34.44 -0.34 -15.40 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 9 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 9.95 7.48 -10.98 -0.08 9.87 16 14 O -0.52 -12.54 14.42 5.56 0.08 -12.46 16 15 C 0.03 0.36 3.85 -4.97 -0.02 0.34 16 16 N -0.49 -6.45 5.06 -231.40 -1.17 -7.62 16 17 C 0.03 0.44 5.80 -2.18 -0.01 0.43 16 18 C -0.12 -1.40 5.48 -25.35 -0.14 -1.54 16 19 C 0.17 1.58 1.01 -130.44 -0.13 1.45 16 20 C -0.16 -1.23 8.16 37.16 0.30 -0.93 16 21 N -0.70 -5.90 5.10 -46.33 -0.24 -6.13 16 22 C 0.47 4.68 6.80 -10.99 -0.07 4.60 16 23 O -0.50 -6.58 13.91 5.55 0.08 -6.50 16 24 C 0.26 2.01 5.72 36.01 0.21 2.22 16 25 F -0.18 -1.82 17.32 2.25 0.04 -1.78 16 26 F -0.18 -1.88 16.95 2.25 0.04 -1.84 16 27 C 0.03 0.27 5.69 -2.18 -0.01 0.26 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 33 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 34 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.06 0.67 6.93 -51.93 -0.36 0.31 16 37 H 0.10 1.21 7.39 -51.93 -0.38 0.82 16 38 H 0.10 1.69 6.91 -51.93 -0.36 1.33 16 39 H 0.04 0.50 7.82 -51.93 -0.41 0.09 16 40 H 0.08 1.09 7.32 -51.93 -0.38 0.71 16 41 H 0.08 0.85 7.71 -51.93 -0.40 0.45 16 42 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.77 6.31 -51.93 -0.33 0.44 16 45 H 0.41 2.68 8.27 -40.82 -0.34 2.34 16 46 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.46 7.70 -51.93 -0.40 0.06 16 48 H 0.09 0.67 7.75 -51.93 -0.40 0.27 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -37.02 390.07 -7.00 -44.03 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.31 Total: 0.15 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.07 Total: 8.46 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -1.06 Total: -52.86 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.16 Total: -18.96 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.62 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.02 -7.00 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439828504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.353 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds