Wall clock time and date at job start Wed Apr 1 2020 04:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.48560 * 111.00129 * 69.87505 * 16 15 13 18 18 C 1.54377 * 104.59882 * 159.03553 * 17 16 15 19 19 C 1.54256 * 105.05892 * 336.14816 * 18 17 16 20 20 C 1.53000 * 110.32441 * 241.09880 * 19 18 17 21 21 N 1.46502 * 110.32481 * 118.99605 * 19 18 17 22 22 C 1.34776 * 120.00076 * 61.45241 * 21 19 18 23 23 O 1.21285 * 120.00038 * 0.02562 * 22 21 19 24 24 C 1.50699 * 120.00042 * 180.02562 * 22 21 19 25 25 F 1.39902 * 109.47383 * 54.99797 * 24 22 21 26 26 F 1.39907 * 109.47191 * 174.99985 * 24 22 21 27 27 C 1.48561 * 110.99902 * 185.28874 * 16 15 13 28 28 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.09000 * 110.40968 * 277.82278 * 17 16 15 39 39 H 1.09003 * 110.41005 * 40.13943 * 17 16 15 40 40 H 1.09005 * 110.32012 * 95.04179 * 18 17 16 41 41 H 1.08991 * 110.32590 * 217.25250 * 18 17 16 42 42 H 1.09000 * 109.46808 * 58.54819 * 20 19 18 43 43 H 1.09001 * 109.47027 * 178.54869 * 20 19 18 44 44 H 1.08992 * 109.47327 * 298.54751 * 20 19 18 45 45 H 0.96999 * 120.00001 * 241.45518 * 21 19 18 46 46 H 1.08998 * 109.47159 * 294.99717 * 24 22 21 47 47 H 1.09005 * 110.41459 * 319.74535 * 27 16 15 48 48 H 1.09001 * 110.41012 * 82.18114 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 1.3194 3.3081 3.6839 18 6 1.4408 3.8164 5.1365 19 6 2.0183 2.6267 5.9306 20 6 1.0394 2.1916 7.0230 21 7 3.3099 2.9875 6.5203 22 6 3.3855 3.9945 7.4128 23 8 2.3841 4.6017 7.7282 24 6 4.7142 4.3660 8.0190 25 9 5.6329 4.6363 6.9991 26 9 4.5598 5.5022 8.8206 27 6 2.1972 1.4996 4.8909 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 5.7170 2.5725 -4.0840 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 1.5666 4.1034 2.9808 39 1 0.3140 2.9325 3.4935 40 1 2.1192 4.6683 5.1840 41 1 0.4600 4.0904 5.5250 42 1 0.0879 1.9150 6.5690 43 1 1.4494 1.3349 7.5580 44 1 0.8837 3.0147 7.7202 45 1 4.1108 2.5016 6.2683 46 1 5.0799 3.5390 8.6276 47 1 1.3290 0.8405 4.8915 48 1 3.1055 0.9332 5.0967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001439828504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:42 Heat of formation + Delta-G solvation = -178.888633 kcal Electronic energy + Delta-G solvation = -31779.395602 eV Core-core repulsion = 27118.562099 eV Total energy + Delta-G solvation = -4660.833503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.17175 -48.22171 -41.64164 -40.72603 -39.23091 -36.95375 -35.82585 -34.84544 -33.11517 -31.85688 -30.88763 -29.94336 -28.75128 -28.32529 -25.96656 -24.39123 -23.91592 -22.80406 -22.34578 -20.80387 -19.79811 -19.44292 -19.09400 -18.73941 -18.45095 -17.96343 -17.39306 -17.28463 -16.48125 -16.40833 -16.28769 -15.88480 -15.62895 -15.40469 -15.02793 -14.76992 -14.69759 -14.64406 -14.54988 -14.36818 -14.25058 -13.98143 -13.79474 -13.52000 -13.37441 -13.33230 -13.18696 -13.12160 -12.98201 -12.78186 -12.54136 -12.38230 -12.34664 -12.04281 -12.01377 -11.86937 -11.83012 -11.73062 -10.90752 -10.83565 -10.55552 -10.30728 -9.47630 -9.31743 -8.34240 -6.38432 1.04737 1.30446 1.35055 1.42742 1.58670 1.86855 2.23542 2.29891 2.91192 2.99706 3.01480 3.08200 3.34527 3.55702 3.60829 3.75618 3.80948 3.93262 4.11155 4.16529 4.25414 4.33634 4.42749 4.44903 4.54566 4.61300 4.65396 4.71881 4.79535 4.80889 4.83901 4.91978 5.01399 5.02678 5.06067 5.09250 5.27472 5.38418 5.40101 5.47819 5.67530 5.80025 5.88141 6.22524 6.25910 6.63082 6.78505 6.85282 7.22916 7.52091 8.82797 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.002586 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.487950 B =10826.108034 C =12060.663861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.532 4.532 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.496 3.504 14 O -0.581 6.581 15 C 0.041 3.959 16 N -0.516 5.516 17 C 0.039 3.961 18 C -0.116 4.116 19 C 0.172 3.828 20 C -0.150 4.150 21 N -0.687 5.687 22 C 0.470 3.530 23 O -0.539 6.539 24 C 0.256 3.744 25 F -0.197 7.197 26 F -0.195 7.195 27 C 0.036 3.964 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.013 0.987 35 H 0.268 0.732 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.420 0.580 46 H 0.194 0.806 47 H 0.093 0.907 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -8.408 24.121 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.285 3.715 14 O -0.460 6.460 15 C -0.089 4.089 16 N -0.241 5.241 17 C -0.089 4.089 18 C -0.155 4.155 19 C 0.086 3.914 20 C -0.208 4.208 21 N -0.340 5.340 22 C 0.252 3.748 23 O -0.416 6.416 24 C 0.200 3.800 25 F -0.179 7.179 26 F -0.177 7.177 27 C -0.091 4.091 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.258 0.742 46 H 0.210 0.790 47 H 0.111 0.889 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.578 -7.156 24.065 27.244 hybrid contribution 0.052 0.697 -1.220 1.406 sum -10.526 -6.459 22.845 25.969 Atomic orbital electron populations 1.22157 0.94099 1.03615 1.01915 1.21775 0.95470 0.81088 1.04054 1.48070 1.64552 1.15262 1.05676 1.19223 0.94666 0.92798 0.82820 1.21572 0.97107 1.31883 1.06494 0.95214 1.25829 0.96659 0.97209 0.99031 1.70042 1.17382 1.46677 1.24479 0.85750 0.80551 0.78947 0.77890 1.20540 1.19936 1.16159 1.21254 0.77146 0.86734 0.86410 1.90645 1.46819 1.20719 1.87801 1.22190 1.03118 0.96006 0.87617 1.65102 1.47849 1.09058 1.02098 1.23065 0.93965 0.95085 0.96787 1.22612 1.01628 0.97618 0.93666 1.21171 0.83212 0.93907 0.93081 1.22139 0.98595 1.02212 0.97854 1.46026 1.12009 1.34431 1.41520 1.21419 0.91309 0.81247 0.80828 1.90775 1.37385 1.52371 1.61049 1.22135 0.86019 0.88539 0.83345 1.93075 1.67788 1.95153 1.61865 1.93023 1.95960 1.55194 1.73475 1.23542 1.04560 0.94710 0.86269 0.88664 0.91997 0.93871 0.91189 0.88203 0.93617 0.96921 0.92329 0.88597 0.85788 0.92803 0.92296 0.93593 0.89755 0.89898 0.90070 0.92341 0.74234 0.78975 0.88893 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.24 71.98 0.74 -2.41 16 2 C 0.10 2.62 5.93 86.38 0.51 3.14 16 3 N -0.60 -23.51 2.46 -826.16 -2.03 -25.54 16 4 C 0.23 11.08 4.23 85.64 0.36 11.44 16 5 C -0.53 -31.44 9.94 25.60 0.25 -31.19 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 7 C 0.01 0.63 5.47 84.65 0.46 1.09 16 8 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 9 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 13 C 0.50 19.26 7.48 87.66 0.66 19.91 16 14 O -0.58 -29.13 14.42 -3.03 -0.04 -29.17 16 15 C 0.04 1.01 3.85 85.56 0.33 1.33 16 16 N -0.52 -12.73 5.06 -886.03 -4.49 -17.22 16 17 C 0.04 1.03 5.80 86.45 0.50 1.53 16 18 C -0.12 -2.70 5.48 31.49 0.17 -2.53 16 19 C 0.17 2.79 1.01 4.50 0.00 2.79 16 20 C -0.15 -1.88 8.16 71.98 0.59 -1.29 16 21 N -0.69 -10.51 5.10 -418.88 -2.13 -12.65 16 22 C 0.47 8.92 6.80 87.66 0.60 9.52 16 23 O -0.54 -14.34 13.91 -3.05 -0.04 -14.38 16 24 C 0.26 3.67 5.72 71.24 0.41 4.08 16 25 F -0.20 -3.77 17.32 44.97 0.78 -2.99 16 26 F -0.20 -4.07 16.95 44.97 0.76 -3.31 16 27 C 0.04 0.51 5.69 86.45 0.49 1.00 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.06 1.08 7.22 -2.39 -0.02 1.06 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 2.08 8.07 -2.38 -0.02 2.06 16 32 H 0.10 1.98 6.44 -2.39 -0.02 1.96 16 33 H 0.05 2.06 7.13 -2.39 -0.02 2.04 16 34 H 0.01 0.68 6.85 -2.39 -0.02 0.66 16 35 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 36 H 0.10 1.66 6.93 -2.39 -0.02 1.65 16 37 H 0.12 2.45 7.39 -2.39 -0.02 2.43 16 38 H 0.05 1.93 6.91 -2.39 -0.02 1.91 16 39 H 0.06 1.31 7.82 -2.39 -0.02 1.29 16 40 H 0.05 1.35 7.32 -2.38 -0.02 1.34 16 41 H 0.08 1.81 7.71 -2.39 -0.02 1.80 16 42 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 1.04 6.31 -2.39 -0.02 1.02 16 45 H 0.42 4.53 8.27 -92.71 -0.77 3.77 16 46 H 0.19 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.09 0.82 7.70 -2.38 -0.02 0.80 16 48 H 0.11 1.13 7.75 -2.39 -0.02 1.11 16 Total: -1.00 -89.12 390.07 1.23 -87.89 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.16 Total: 11.94 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 6.07 Total: 18.43 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -8.35 Total: -115.42 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.09 Total: -43.55 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 1.54 Total: -6.30 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -89.12 1.23 -87.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439828504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.995 kcal (2) G-P(sol) polarization free energy of solvation -89.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds