Wall clock time and date at job start Wed Apr 1 2020 04:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46512 * 109.47033 * 2 1 4 4 C 1.46491 * 119.99962 * 90.00019 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99883 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.34774 * 119.99637 * 270.00069 * 3 2 1 14 14 O 1.21281 * 119.99656 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00400 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47017 * 180.02562 * 15 13 3 17 17 C 1.48527 * 111.00222 * 52.60503 * 16 15 13 18 18 C 1.54937 * 103.22853 * 159.71790 * 17 16 15 19 19 C 1.54595 * 102.92229 * 322.58454 * 18 17 16 20 20 C 1.53000 * 110.30708 * 140.87026 * 19 18 17 21 21 N 1.46496 * 110.31262 * 263.04153 * 19 18 17 22 22 C 1.34778 * 119.99905 * 295.71517 * 21 19 18 23 23 O 1.21285 * 119.99912 * 0.02562 * 22 21 19 24 24 C 1.50702 * 120.00290 * 179.97438 * 22 21 19 25 25 F 1.39897 * 109.47528 * 185.00146 * 24 22 21 26 26 F 1.39902 * 109.47128 * 305.00754 * 24 22 21 27 27 C 1.47899 * 110.99586 * 169.99989 * 16 15 13 28 28 H 1.09003 * 109.47524 * 60.00120 * 1 2 3 29 29 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47311 * 300.00158 * 1 2 3 31 31 H 1.09002 * 109.47453 * 240.00375 * 2 1 3 32 32 H 1.09003 * 109.47524 * 119.99880 * 2 1 3 33 33 H 1.09004 * 109.47166 * 150.00149 * 4 3 2 34 34 H 1.08994 * 109.47507 * 29.99855 * 4 3 2 35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46957 * 300.00083 * 15 13 3 37 37 H 1.08998 * 109.46767 * 59.99658 * 15 13 3 38 38 H 1.08999 * 110.67137 * 278.15152 * 17 16 15 39 39 H 1.08998 * 110.66970 * 41.28249 * 17 16 15 40 40 H 1.08999 * 110.72427 * 204.22825 * 18 17 16 41 41 H 1.08994 * 110.87744 * 81.01702 * 18 17 16 42 42 H 1.08999 * 109.47542 * 304.28516 * 20 19 18 43 43 H 1.09002 * 109.47178 * 64.28593 * 20 19 18 44 44 H 1.09001 * 109.46848 * 184.28309 * 20 19 18 45 45 H 0.96997 * 120.00233 * 115.71417 * 21 19 18 46 46 H 1.09004 * 109.46670 * 65.00030 * 24 22 21 47 47 H 1.08996 * 109.92331 * 333.50647 * 27 16 15 48 48 H 1.09006 * 109.91888 * 94.60752 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 1.0065 2.7823 1.7037 6 1 0.1155 2.7248 1.0961 7 6 0.9932 3.5006 2.8805 8 7 2.0781 3.5703 3.6206 9 14 -0.5657 4.3748 3.4235 10 1 -1.6555 3.3811 3.5975 11 1 -0.3196 5.0709 4.7121 12 1 -0.9612 5.3678 2.3927 13 6 2.2428 2.0166 -1.1672 14 8 2.6466 3.1602 -1.1672 15 6 1.9922 1.3060 -2.4724 16 7 2.3108 2.2058 -3.5889 17 6 3.6780 2.7682 -3.4458 18 6 4.0274 3.2216 -4.8855 19 6 3.3946 2.1147 -5.7597 20 6 2.7674 2.7234 -7.0155 21 7 4.4031 1.1172 -6.1260 22 6 5.4480 1.4687 -6.9013 23 8 5.5536 2.6109 -7.2953 24 6 6.4858 0.4428 -7.2778 25 9 7.5215 1.0644 -7.9836 26 9 7.0001 -0.1474 -6.1183 27 6 2.3077 1.4759 -4.8752 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0643 2.7986 1.1383 34 1 2.5505 1.3453 2.0283 35 1 2.0689 4.0760 4.4484 36 1 2.6228 0.4188 -2.5299 37 1 0.9444 1.0114 -2.5302 38 1 3.6747 3.6192 -2.7647 39 1 4.3749 2.0032 -3.1036 40 1 5.1075 3.2552 -5.0279 41 1 3.5803 4.1907 -5.1069 42 1 2.0475 3.4894 -6.7274 43 1 3.5477 3.1711 -7.6309 44 1 2.2601 1.9431 -7.5829 45 1 4.3188 0.2038 -5.8107 46 1 6.0286 -0.3237 -7.9035 47 1 2.5376 0.4240 -4.7060 48 1 1.3328 1.5705 -5.3535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001439828506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:03 Heat of formation + Delta-G solvation = -149.252018 kcal Electronic energy + Delta-G solvation = -31868.794147 eV Core-core repulsion = 27209.245784 eV Total energy + Delta-G solvation = -4659.548363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -49.58864 -47.61669 -40.87739 -39.46105 -38.11644 -35.48293 -34.77711 -32.81051 -32.16394 -30.03230 -29.96683 -28.35708 -28.11920 -26.72675 -24.89622 -22.80612 -22.64140 -22.23275 -21.18813 -20.09807 -18.83392 -18.45926 -18.20562 -17.75340 -16.79343 -16.47830 -16.36671 -15.79938 -15.59379 -15.21416 -14.95825 -14.79494 -14.41392 -14.40483 -13.95505 -13.92119 -13.81971 -13.62463 -13.35926 -13.23540 -13.03158 -12.65688 -12.59460 -12.57297 -12.22969 -12.15676 -12.09788 -11.62510 -11.41475 -11.28168 -11.21170 -11.09237 -11.04986 -10.91366 -10.71988 -10.50897 -10.17211 -10.05310 -9.62873 -9.55590 -8.86396 -8.42958 -8.35326 -7.68538 -6.04128 -4.08122 1.71105 2.13255 3.30991 3.32260 3.34395 3.36651 3.41913 3.57215 3.69594 4.05318 4.12616 4.22765 4.25321 4.44949 4.52334 4.64865 5.00070 5.07545 5.17452 5.27075 5.28700 5.31033 5.36590 5.41295 5.49731 5.56166 5.67245 5.73540 5.78491 5.81621 5.99667 6.01819 6.07028 6.14906 6.26910 6.39449 6.70973 6.75732 6.87175 6.88597 7.08302 7.42484 7.43783 7.54553 7.92304 8.23536 8.38835 8.90464 9.08300 9.56618 11.04093 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.002309 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.189642 B =12120.952639 C =12219.864071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.525 6.525 15 C 0.027 3.973 16 N -0.494 5.494 17 C 0.033 3.967 18 C -0.124 4.124 19 C 0.161 3.839 20 C -0.156 4.156 21 N -0.704 5.704 22 C 0.473 3.527 23 O -0.492 6.492 24 C 0.256 3.744 25 F -0.176 7.176 26 F -0.188 7.188 27 C 0.036 3.964 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.403 0.597 46 H 0.136 0.864 47 H 0.049 0.951 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -13.008 -22.131 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.104 4.104 16 N -0.218 5.218 17 C -0.094 4.094 18 C -0.163 4.163 19 C 0.076 3.924 20 C -0.214 4.214 21 N -0.357 5.357 22 C 0.254 3.746 23 O -0.365 6.365 24 C 0.199 3.801 25 F -0.157 7.157 26 F -0.169 7.169 27 C -0.092 4.092 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.239 0.761 46 H 0.153 0.847 47 H 0.067 0.933 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.116 -11.065 -22.177 24.979 hybrid contribution -0.278 -0.923 0.688 1.184 sum 2.838 -11.987 -21.489 24.769 Atomic orbital electron populations 1.22233 0.96238 1.00878 1.03498 1.21389 0.94656 0.83767 1.01495 1.48270 1.63930 1.13163 1.07701 1.19275 0.97553 0.92408 0.77903 1.21394 0.97467 1.31256 1.05983 0.92351 1.24935 0.96450 0.96273 0.96481 1.69921 1.27512 1.41782 1.14298 0.86586 0.83245 0.79913 0.77841 1.20303 1.21239 1.20154 1.20034 0.79017 0.86983 0.84793 1.90607 1.45653 1.17317 1.86593 1.22361 1.02828 0.94297 0.90912 1.64724 1.27708 1.29604 0.99765 1.23582 0.87275 1.01518 0.97032 1.22937 1.01117 0.98264 0.93977 1.21344 0.86993 0.88526 0.95511 1.22188 1.01523 1.01231 0.96504 1.46213 1.24341 1.14223 1.50926 1.21017 0.83398 0.89773 0.80426 1.90807 1.75015 1.18766 1.51949 1.21690 0.84343 0.92076 0.81993 1.93071 1.60107 1.84393 1.78100 1.93077 1.88505 1.84529 1.50778 1.23251 0.98861 0.95915 0.91201 0.93211 0.92843 0.90474 0.92333 0.90681 0.93950 0.95142 0.92703 0.92644 0.88131 0.86091 0.94510 0.90549 0.89405 0.90590 0.90254 0.92556 0.76094 0.84721 0.93263 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 37.15 0.38 -2.07 16 2 C 0.11 1.67 5.98 -4.04 -0.02 1.65 16 3 N -0.60 -12.06 2.46 -175.06 -0.43 -12.49 16 4 C 0.25 6.30 5.20 -5.20 -0.03 6.27 16 5 C -0.52 -14.45 8.92 -34.44 -0.31 -14.75 16 6 H 0.06 1.61 7.42 -52.49 -0.39 1.22 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 C 0.51 10.00 7.38 -10.98 -0.08 9.92 16 14 O -0.53 -12.57 13.10 5.56 0.07 -12.50 16 15 C 0.03 0.38 4.07 -4.98 -0.02 0.36 16 16 N -0.49 -6.76 5.26 -231.90 -1.22 -7.98 16 17 C 0.03 0.48 5.30 -1.90 -0.01 0.47 16 18 C -0.12 -1.55 5.85 -24.87 -0.15 -1.69 16 19 C 0.16 1.54 0.94 -130.46 -0.12 1.41 16 20 C -0.16 -1.40 8.15 37.16 0.30 -1.10 16 21 N -0.70 -5.32 5.15 -46.35 -0.24 -5.56 16 22 C 0.47 4.29 6.82 -10.98 -0.07 4.22 16 23 O -0.49 -6.33 13.51 5.55 0.08 -6.26 16 24 C 0.26 1.71 5.72 36.01 0.21 1.92 16 25 F -0.18 -1.71 16.95 2.25 0.04 -1.67 16 26 F -0.19 -1.50 17.32 2.25 0.04 -1.46 16 27 C 0.04 0.34 6.15 -2.75 -0.02 0.32 16 28 H 0.05 0.70 7.22 -51.93 -0.38 0.32 16 29 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.08 1.36 7.26 -51.93 -0.38 0.99 16 31 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 32 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 34 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 36 H 0.06 0.64 7.07 -51.93 -0.37 0.28 16 37 H 0.10 1.28 7.19 -51.93 -0.37 0.90 16 38 H 0.12 2.24 5.97 -51.93 -0.31 1.93 16 39 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 40 H 0.08 1.02 6.81 -51.93 -0.35 0.67 16 41 H 0.09 1.13 7.84 -51.93 -0.41 0.72 16 42 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 43 H 0.08 0.85 6.04 -51.93 -0.31 0.53 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.40 1.96 8.09 -40.82 -0.33 1.63 16 46 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.05 0.36 6.89 -51.93 -0.36 0.00 16 48 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -34.86 388.08 -7.27 -42.13 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.13 Total: 0.36 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.04 Total: 8.55 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -1.15 Total: -51.74 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.15 Total: -18.76 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.86 -7.27 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439828506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.122 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds