Wall clock time and date at job start Wed Apr 1 2020 04:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46512 * 109.47033 * 2 1 4 4 C 1.46491 * 119.99962 * 90.00019 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99883 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.34774 * 119.99637 * 270.00069 * 3 2 1 14 14 O 1.21281 * 119.99656 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00400 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47017 * 180.02562 * 15 13 3 17 17 C 1.48527 * 111.00222 * 52.60503 * 16 15 13 18 18 C 1.54937 * 103.22853 * 159.71790 * 17 16 15 19 19 C 1.54595 * 102.92229 * 322.58454 * 18 17 16 20 20 C 1.53000 * 110.30708 * 140.87026 * 19 18 17 21 21 N 1.46496 * 110.31262 * 263.04153 * 19 18 17 22 22 C 1.34778 * 119.99905 * 295.71517 * 21 19 18 23 23 O 1.21285 * 119.99912 * 0.02562 * 22 21 19 24 24 C 1.50702 * 120.00290 * 179.97438 * 22 21 19 25 25 F 1.39897 * 109.47528 * 185.00146 * 24 22 21 26 26 F 1.39902 * 109.47128 * 305.00754 * 24 22 21 27 27 C 1.47899 * 110.99586 * 169.99989 * 16 15 13 28 28 H 1.09003 * 109.47524 * 60.00120 * 1 2 3 29 29 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47311 * 300.00158 * 1 2 3 31 31 H 1.09002 * 109.47453 * 240.00375 * 2 1 3 32 32 H 1.09003 * 109.47524 * 119.99880 * 2 1 3 33 33 H 1.09004 * 109.47166 * 150.00149 * 4 3 2 34 34 H 1.08994 * 109.47507 * 29.99855 * 4 3 2 35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46957 * 300.00083 * 15 13 3 37 37 H 1.08998 * 109.46767 * 59.99658 * 15 13 3 38 38 H 1.08999 * 110.67137 * 278.15152 * 17 16 15 39 39 H 1.08998 * 110.66970 * 41.28249 * 17 16 15 40 40 H 1.08999 * 110.72427 * 204.22825 * 18 17 16 41 41 H 1.08994 * 110.87744 * 81.01702 * 18 17 16 42 42 H 1.08999 * 109.47542 * 304.28516 * 20 19 18 43 43 H 1.09002 * 109.47178 * 64.28593 * 20 19 18 44 44 H 1.09001 * 109.46848 * 184.28309 * 20 19 18 45 45 H 0.96997 * 120.00233 * 115.71417 * 21 19 18 46 46 H 1.09004 * 109.46670 * 65.00030 * 24 22 21 47 47 H 1.08996 * 109.92331 * 333.50647 * 27 16 15 48 48 H 1.09006 * 109.91888 * 94.60752 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 1.0065 2.7823 1.7037 6 1 0.1155 2.7248 1.0961 7 6 0.9932 3.5006 2.8805 8 7 2.0781 3.5703 3.6206 9 14 -0.5657 4.3748 3.4235 10 1 -1.6555 3.3811 3.5975 11 1 -0.3196 5.0709 4.7121 12 1 -0.9612 5.3678 2.3927 13 6 2.2428 2.0166 -1.1672 14 8 2.6466 3.1602 -1.1672 15 6 1.9922 1.3060 -2.4724 16 7 2.3108 2.2058 -3.5889 17 6 3.6780 2.7682 -3.4458 18 6 4.0274 3.2216 -4.8855 19 6 3.3946 2.1147 -5.7597 20 6 2.7674 2.7234 -7.0155 21 7 4.4031 1.1172 -6.1260 22 6 5.4480 1.4687 -6.9013 23 8 5.5536 2.6109 -7.2953 24 6 6.4858 0.4428 -7.2778 25 9 7.5215 1.0644 -7.9836 26 9 7.0001 -0.1474 -6.1183 27 6 2.3077 1.4759 -4.8752 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0643 2.7986 1.1383 34 1 2.5505 1.3453 2.0283 35 1 2.0689 4.0760 4.4484 36 1 2.6228 0.4188 -2.5299 37 1 0.9444 1.0114 -2.5302 38 1 3.6747 3.6192 -2.7647 39 1 4.3749 2.0032 -3.1036 40 1 5.1075 3.2552 -5.0279 41 1 3.5803 4.1907 -5.1069 42 1 2.0475 3.4894 -6.7274 43 1 3.5477 3.1711 -7.6309 44 1 2.2601 1.9431 -7.5829 45 1 4.3188 0.2038 -5.8107 46 1 6.0286 -0.3237 -7.9035 47 1 2.5376 0.4240 -4.7060 48 1 1.3328 1.5705 -5.3535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001439828506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:53 Heat of formation + Delta-G solvation = -176.332249 kcal Electronic energy + Delta-G solvation = -31869.968434 eV Core-core repulsion = 27209.245784 eV Total energy + Delta-G solvation = -4660.722650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -50.17637 -48.22477 -41.74507 -40.76122 -39.19131 -36.97983 -35.77775 -34.84362 -33.09194 -31.50768 -30.95573 -29.72631 -28.77191 -28.15099 -26.04929 -24.50667 -23.98648 -23.12445 -22.13464 -20.89528 -19.87328 -19.47486 -18.75923 -18.68886 -18.43058 -17.96401 -17.50082 -16.86551 -16.59483 -16.48306 -16.21405 -16.01855 -15.71879 -15.15629 -15.03271 -14.91154 -14.60506 -14.55621 -14.44765 -14.33984 -14.16656 -14.01397 -13.79561 -13.60345 -13.28964 -13.23617 -13.14445 -13.07539 -12.95854 -12.70131 -12.58117 -12.40221 -12.36922 -12.12509 -12.03516 -11.97846 -11.72589 -11.59139 -10.89822 -10.62039 -10.46073 -10.26496 -9.46085 -9.33969 -8.20494 -6.33439 1.02951 1.35631 1.40105 1.46798 1.50873 1.86406 2.27319 2.41989 2.84926 3.01488 3.09221 3.12759 3.35202 3.54735 3.59872 3.75566 3.79898 3.88834 4.10981 4.17223 4.26490 4.33706 4.41474 4.46985 4.55749 4.66357 4.69551 4.77137 4.84656 4.91319 4.96073 5.03755 5.05414 5.08347 5.18468 5.24437 5.29376 5.33981 5.54767 5.62938 5.77297 5.88778 5.96562 6.09687 6.19291 6.74018 6.83668 6.85223 7.32053 7.55937 8.86444 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.002309 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.189642 B =12120.952639 C =12219.864071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.530 4.530 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.492 3.508 14 O -0.581 6.581 15 C 0.042 3.958 16 N -0.515 5.515 17 C 0.041 3.959 18 C -0.120 4.120 19 C 0.169 3.831 20 C -0.150 4.150 21 N -0.689 5.689 22 C 0.469 3.531 23 O -0.538 6.538 24 C 0.259 3.741 25 F -0.196 7.196 26 F -0.195 7.195 27 C 0.041 3.959 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.108 0.892 32 H 0.073 0.927 33 H -0.007 1.007 34 H 0.020 0.980 35 H 0.265 0.735 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.421 0.579 46 H 0.196 0.804 47 H 0.085 0.915 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 -16.484 -24.298 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.569 4.569 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.281 3.719 14 O -0.461 6.461 15 C -0.088 4.088 16 N -0.240 5.240 17 C -0.087 4.087 18 C -0.159 4.159 19 C 0.083 3.917 20 C -0.209 4.209 21 N -0.343 5.343 22 C 0.251 3.749 23 O -0.414 6.414 24 C 0.203 3.797 25 F -0.177 7.177 26 F -0.176 7.176 27 C -0.086 4.086 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.011 0.989 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.260 0.740 46 H 0.212 0.788 47 H 0.103 0.897 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.033 -14.632 -24.355 28.431 hybrid contribution 0.412 0.162 1.367 1.437 sum 1.445 -14.470 -22.988 27.202 Atomic orbital electron populations 1.22161 0.95432 1.02869 1.01713 1.21760 0.95280 0.80931 1.03852 1.48292 1.64178 1.15093 1.06106 1.18686 0.95295 0.91432 0.80444 1.21668 0.97925 1.31335 1.05968 0.92639 1.25837 0.99711 0.97090 0.96704 1.70048 1.29613 1.42737 1.14773 0.85546 0.79670 0.78835 0.77246 1.18354 1.20613 1.20517 1.21213 0.77517 0.86699 0.86501 1.90613 1.47769 1.20096 1.87589 1.22311 1.04981 0.94322 0.87218 1.64650 1.26703 1.31176 1.01489 1.23247 0.88394 0.99910 0.97102 1.22813 1.00300 0.99166 0.93650 1.21176 0.87212 0.87997 0.95357 1.22121 1.00880 1.01828 0.96026 1.46048 1.23514 1.14676 1.50093 1.21539 0.83885 0.89682 0.79784 1.90801 1.76102 1.20814 1.53675 1.22106 0.83057 0.92317 0.82216 1.93029 1.61146 1.85023 1.78503 1.93064 1.88589 1.84400 1.51538 1.23335 0.99575 0.97140 0.88579 0.92636 0.88893 0.94569 0.87425 0.90851 0.98863 0.96192 0.92594 0.88903 0.85569 0.90986 0.94700 0.92046 0.90749 0.91064 0.92212 0.89905 0.73994 0.78803 0.89723 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 10.24 71.98 0.74 -3.51 16 2 C 0.10 2.86 5.98 86.37 0.52 3.38 16 3 N -0.60 -24.46 2.46 -826.15 -2.03 -26.49 16 4 C 0.26 14.05 5.20 85.64 0.45 14.49 16 5 C -0.53 -30.30 8.92 25.60 0.23 -30.07 16 6 H 0.06 3.13 7.42 -2.91 -0.02 3.11 16 7 C 0.01 0.29 5.46 84.66 0.46 0.75 16 8 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 9 Si 0.96 45.32 29.54 68.60 2.03 47.34 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 C 0.49 19.48 7.38 87.66 0.65 20.13 16 14 O -0.58 -29.41 13.10 -3.03 -0.04 -29.45 16 15 C 0.04 1.05 4.07 85.56 0.35 1.39 16 16 N -0.52 -13.12 5.26 -887.59 -4.67 -17.79 16 17 C 0.04 1.24 5.30 86.65 0.46 1.70 16 18 C -0.12 -3.07 5.85 31.80 0.19 -2.88 16 19 C 0.17 2.83 0.94 4.48 0.00 2.84 16 20 C -0.15 -2.39 8.15 71.98 0.59 -1.81 16 21 N -0.69 -8.32 5.15 -418.94 -2.16 -10.48 16 22 C 0.47 7.66 6.82 87.66 0.60 8.26 16 23 O -0.54 -13.77 13.51 -3.05 -0.04 -13.82 16 24 C 0.26 2.77 5.72 71.24 0.41 3.17 16 25 F -0.20 -3.56 16.95 44.97 0.76 -2.80 16 26 F -0.19 -2.63 17.32 44.97 0.78 -1.85 16 27 C 0.04 0.60 6.15 86.45 0.53 1.13 16 28 H 0.05 1.36 7.22 -2.39 -0.02 1.35 16 29 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.04 1.23 7.26 -2.39 -0.02 1.21 16 31 H 0.11 1.94 6.44 -2.39 -0.02 1.92 16 32 H 0.07 2.05 7.89 -2.39 -0.02 2.03 16 33 H -0.01 -0.42 7.42 -2.38 -0.02 -0.44 16 34 H 0.02 1.09 7.89 -2.39 -0.02 1.07 16 35 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 36 H 0.09 1.64 7.07 -2.39 -0.02 1.62 16 37 H 0.13 2.56 7.19 -2.39 -0.02 2.55 16 38 H 0.07 2.91 5.97 -2.39 -0.01 2.90 16 39 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 40 H 0.06 1.73 6.81 -2.39 -0.02 1.72 16 41 H 0.07 2.06 7.84 -2.39 -0.02 2.04 16 42 H 0.07 1.20 8.11 -2.39 -0.02 1.18 16 43 H 0.06 1.23 6.04 -2.39 -0.01 1.22 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.42 2.13 8.09 -92.71 -0.75 1.38 16 46 H 0.20 -0.19 8.14 -2.38 -0.02 -0.21 16 47 H 0.08 0.69 6.89 -2.39 -0.02 0.67 16 48 H 0.11 1.34 7.69 -2.38 -0.02 1.32 16 Total: -1.00 -84.96 388.08 1.32 -83.64 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.24 Total: 9.33 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 6.16 Total: 18.98 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -8.57 Total: -111.39 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.08 Total: -43.26 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 1.54 Total: -4.65 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -84.96 1.32 -83.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439828506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.688 kcal (2) G-P(sol) polarization free energy of solvation -84.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds